Wall clock time and date at job start Tue Mar 31 2020 07:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 C 1.53003 * 109.46946 * 119.99992 * 2 1 3 5 5 C 1.53005 * 109.46877 * 175.00095 * 4 2 1 6 6 N 1.46508 * 109.46760 * 179.97438 * 5 4 2 7 7 C 1.46500 * 119.99855 * 269.99703 * 6 5 4 8 8 C 1.50697 * 109.47039 * 270.00209 * 7 6 5 9 9 H 1.08000 * 120.00289 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99623 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00285 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00002 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46764 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47632 * 119.99801 * 12 10 8 15 15 H 1.48506 * 109.47106 * 240.00003 * 12 10 8 16 16 C 1.34774 * 119.99630 * 89.99854 * 6 5 4 17 17 O 1.21283 * 120.00315 * 0.02562 * 16 6 5 18 18 C 1.50704 * 119.99429 * 179.97438 * 16 6 5 19 19 C 1.50703 * 109.46698 * 180.02562 * 18 16 6 20 20 C 1.38425 * 122.53762 * 90.00158 * 19 18 16 21 21 C 1.33390 * 114.92123 * 179.97438 * 20 19 18 22 22 S 1.75891 * 109.59251 * 0.02562 * 21 20 19 23 23 C 1.33383 * 122.54063 * 269.97431 * 19 18 16 24 24 H 1.09001 * 109.46909 * 300.00044 * 1 2 3 25 25 H 1.08994 * 109.46738 * 60.00169 * 1 2 3 26 26 H 1.08999 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47210 * 239.99628 * 2 1 3 28 28 H 1.08999 * 109.46828 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47247 * 300.00102 * 3 2 1 30 30 H 1.09001 * 109.47273 * 60.00179 * 3 2 1 31 31 H 1.08998 * 109.47412 * 54.99853 * 4 2 1 32 32 H 1.09002 * 109.46989 * 295.00001 * 4 2 1 33 33 H 1.08999 * 109.46995 * 60.00407 * 5 4 2 34 34 H 1.08994 * 109.46902 * 299.99847 * 5 4 2 35 35 H 1.08998 * 109.47076 * 30.00424 * 7 6 5 36 36 H 1.09004 * 109.46806 * 150.00063 * 7 6 5 37 37 H 0.97001 * 120.00175 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47203 * 60.00330 * 18 16 6 39 39 H 1.09003 * 109.47454 * 299.99901 * 18 16 6 40 40 H 1.07997 * 122.54292 * 359.71157 * 20 19 18 41 41 H 1.08003 * 125.20243 * 179.97438 * 21 20 19 42 42 H 1.08000 * 125.20529 * 0.06732 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3845 7 6 4.4017 -0.7529 3.5823 8 6 5.8556 -0.3610 3.5224 9 1 6.4596 -0.6545 2.6765 10 6 6.4147 0.3722 4.5475 11 7 5.6794 0.7291 5.5777 12 14 8.2167 0.8586 4.4730 13 1 8.8186 0.3376 3.2192 14 1 8.3315 2.3388 4.4999 15 1 8.9329 0.2852 5.6408 16 6 4.1819 -2.8627 2.3833 17 8 3.8939 -3.4987 1.3915 18 6 4.6848 -3.5725 3.6139 19 6 4.7359 -5.0558 3.3526 20 6 5.8571 -5.6827 2.8367 21 6 5.7361 -7.0002 2.6665 22 16 4.1326 -7.5155 3.1732 23 6 3.7045 -5.8641 3.6012 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9995 0.1675 1.1422 34 1 3.8532 -1.3940 0.3003 35 1 3.7851 0.1447 3.6303 36 1 4.2258 -1.3624 4.4687 37 1 6.0726 1.2453 6.2987 38 1 4.0126 -3.3732 4.4485 39 1 5.6841 -3.2124 3.8583 40 1 6.7599 -5.1453 2.5869 41 1 6.5049 -7.6507 2.2764 42 1 2.7517 -5.5522 4.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171549245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:58 Heat of formation + Delta-G solvation = -27.920779 kcal Electronic energy + Delta-G solvation = -21734.247946 eV Core-core repulsion = 18612.178069 eV Total energy + Delta-G solvation = -3122.069877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.40865 -37.60391 -36.36945 -34.66253 -32.56066 -31.00617 -29.24544 -27.53476 -27.05124 -26.71041 -23.54914 -23.04496 -22.23590 -19.73553 -18.84836 -18.09068 -17.19519 -16.62041 -16.24450 -15.53244 -15.00133 -14.85203 -14.41125 -14.14941 -13.73423 -13.51655 -12.79109 -12.72293 -12.66118 -12.47104 -12.33191 -12.07363 -12.05169 -11.79104 -11.64326 -11.44976 -11.17532 -11.08148 -10.87268 -10.81127 -10.61942 -10.52821 -10.44093 -10.23695 -10.05312 -9.70637 -9.06773 -8.59706 -8.49499 -8.06857 -7.67653 -6.20712 -4.28306 1.29276 1.92336 2.21836 3.00081 3.19737 3.28793 3.32278 3.46927 4.04336 4.32711 5.07763 5.10877 5.13831 5.16675 5.17340 5.30864 5.51151 5.67035 5.72138 5.74414 5.76208 5.87961 5.91490 5.94504 6.02320 6.04026 6.13775 6.25479 6.27579 6.32995 6.38449 6.41758 6.63387 6.68996 6.71306 6.80646 6.84024 7.17236 7.56310 7.74865 8.03999 8.36794 8.78411 9.06678 9.40333 10.85799 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.005901 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.955563 B = 4743.494072 C = 7442.723603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.127 4.127 5 C 0.121 3.879 6 N -0.596 5.596 7 C 0.236 3.764 8 C -0.537 4.537 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.519 3.481 17 O -0.568 6.568 18 C -0.081 4.081 19 C -0.069 4.069 20 C -0.113 4.113 21 C -0.217 4.217 22 S 0.066 5.934 23 C -0.201 4.201 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.215 -7.256 -4.943 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.326 5.326 7 C 0.116 3.884 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.307 3.693 17 O -0.449 6.449 18 C -0.123 4.123 19 C -0.081 4.081 20 C -0.144 4.144 21 C -0.352 4.352 22 S 0.328 5.672 23 C -0.336 4.336 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.104 -8.871 -5.217 11.965 hybrid contribution 1.765 1.866 0.127 2.572 sum -4.339 -7.005 -5.090 9.685 Atomic orbital electron populations 1.21821 0.95636 1.01408 1.01319 1.21047 0.95330 0.96360 0.98520 1.21901 1.01639 0.95830 1.01282 1.21986 0.96651 1.00354 0.97542 1.21330 0.92853 0.97599 0.88503 1.48222 1.62904 1.05821 1.15692 1.19437 0.95914 0.91619 0.81390 1.21540 0.95256 1.34860 1.05959 0.92046 1.24938 0.98236 0.95477 0.95102 1.69926 1.36116 1.37843 1.09020 0.86493 0.84753 0.78363 0.78205 1.19656 1.20853 1.20786 1.20295 0.77561 0.82385 0.89046 1.90604 1.52413 1.66321 1.35560 1.20399 1.05264 0.89249 0.97383 1.18581 0.93289 0.95971 1.00274 1.20109 0.99774 0.93664 1.00851 1.25417 1.00182 0.99136 1.10422 1.83946 1.09695 1.09760 1.63799 1.25310 1.03069 0.95216 1.10051 0.92807 0.93091 0.92948 0.91394 0.92093 0.93280 0.92620 0.92131 0.91852 0.90413 0.91320 0.94649 0.94408 0.92562 0.88432 0.86835 0.84318 0.82243 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.24 2.92 -90.61 -0.26 -1.51 16 3 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 4 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 5 C 0.12 2.22 5.16 -4.03 -0.02 2.20 16 6 N -0.60 -12.34 2.46 -175.05 -0.43 -12.77 16 7 C 0.24 5.44 4.96 -5.20 -0.03 5.41 16 8 C -0.54 -13.59 9.28 -34.44 -0.32 -13.91 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -24.03 13.29 55.43 0.74 -23.29 16 12 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.52 10.73 7.67 -10.98 -0.08 10.65 16 17 O -0.57 -12.86 15.61 5.56 0.09 -12.77 16 18 C -0.08 -1.48 4.51 -29.03 -0.13 -1.61 16 19 C -0.07 -1.16 4.29 -106.25 -0.46 -1.62 16 20 C -0.11 -1.79 9.98 -41.21 -0.41 -2.20 16 21 C -0.22 -2.98 11.23 29.04 0.33 -2.65 16 22 S 0.07 0.88 23.34 -107.50 -2.51 -1.63 16 23 C -0.20 -3.10 10.98 29.04 0.32 -2.78 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.43 6.49 -51.93 -0.34 1.09 16 34 H 0.07 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.04 0.89 6.44 -51.93 -0.33 0.55 16 37 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.10 1.67 7.38 -51.93 -0.38 1.29 16 39 H 0.11 2.15 7.99 -51.93 -0.41 1.74 16 40 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -28.34 360.94 -9.13 -37.47 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.81 Total: 3.88 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.63 Total: -11.48 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.31 Total: -36.06 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.34 -9.13 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171549245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.552 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds