Wall clock time and date at job start Tue Mar 31 2020 07:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 C 1.53003 * 109.46946 * 119.99992 * 2 1 3 5 5 C 1.53005 * 109.46877 * 175.00095 * 4 2 1 6 6 N 1.46508 * 109.46760 * 179.97438 * 5 4 2 7 7 C 1.46500 * 119.99855 * 269.99703 * 6 5 4 8 8 C 1.50697 * 109.47039 * 270.00209 * 7 6 5 9 9 H 1.08000 * 120.00289 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99623 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00285 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00002 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.46764 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47632 * 119.99801 * 12 10 8 15 15 H 1.48506 * 109.47106 * 240.00003 * 12 10 8 16 16 C 1.34774 * 119.99630 * 89.99854 * 6 5 4 17 17 O 1.21283 * 120.00315 * 0.02562 * 16 6 5 18 18 C 1.50704 * 119.99429 * 179.97438 * 16 6 5 19 19 C 1.50703 * 109.46698 * 180.02562 * 18 16 6 20 20 C 1.38425 * 122.53762 * 90.00158 * 19 18 16 21 21 C 1.33390 * 114.92123 * 179.97438 * 20 19 18 22 22 S 1.75891 * 109.59251 * 0.02562 * 21 20 19 23 23 C 1.33383 * 122.54063 * 269.97431 * 19 18 16 24 24 H 1.09001 * 109.46909 * 300.00044 * 1 2 3 25 25 H 1.08994 * 109.46738 * 60.00169 * 1 2 3 26 26 H 1.08999 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47210 * 239.99628 * 2 1 3 28 28 H 1.08999 * 109.46828 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47247 * 300.00102 * 3 2 1 30 30 H 1.09001 * 109.47273 * 60.00179 * 3 2 1 31 31 H 1.08998 * 109.47412 * 54.99853 * 4 2 1 32 32 H 1.09002 * 109.46989 * 295.00001 * 4 2 1 33 33 H 1.08999 * 109.46995 * 60.00407 * 5 4 2 34 34 H 1.08994 * 109.46902 * 299.99847 * 5 4 2 35 35 H 1.08998 * 109.47076 * 30.00424 * 7 6 5 36 36 H 1.09004 * 109.46806 * 150.00063 * 7 6 5 37 37 H 0.97001 * 120.00175 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47203 * 60.00330 * 18 16 6 39 39 H 1.09003 * 109.47454 * 299.99901 * 18 16 6 40 40 H 1.07997 * 122.54292 * 359.71157 * 20 19 18 41 41 H 1.08003 * 125.20243 * 179.97438 * 21 20 19 42 42 H 1.08000 * 125.20529 * 0.06732 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3845 7 6 4.4017 -0.7529 3.5823 8 6 5.8556 -0.3610 3.5224 9 1 6.4596 -0.6545 2.6765 10 6 6.4147 0.3722 4.5475 11 7 5.6794 0.7291 5.5777 12 14 8.2167 0.8586 4.4730 13 1 8.8186 0.3376 3.2192 14 1 8.3315 2.3388 4.4999 15 1 8.9329 0.2852 5.6408 16 6 4.1819 -2.8627 2.3833 17 8 3.8939 -3.4987 1.3915 18 6 4.6848 -3.5725 3.6139 19 6 4.7359 -5.0558 3.3526 20 6 5.8571 -5.6827 2.8367 21 6 5.7361 -7.0002 2.6665 22 16 4.1326 -7.5155 3.1732 23 6 3.7045 -5.8641 3.6012 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9995 0.1675 1.1422 34 1 3.8532 -1.3940 0.3003 35 1 3.7851 0.1447 3.6303 36 1 4.2258 -1.3624 4.4687 37 1 6.0726 1.2453 6.2987 38 1 4.0126 -3.3732 4.4485 39 1 5.6841 -3.2124 3.8583 40 1 6.7599 -5.1453 2.5869 41 1 6.5049 -7.6507 2.2764 42 1 2.7517 -5.5522 4.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171549245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:57 Heat of formation + Delta-G solvation = -40.624951 kcal Electronic energy + Delta-G solvation = -21734.798841 eV Core-core repulsion = 18612.178069 eV Total energy + Delta-G solvation = -3122.620771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99735 -38.87552 -37.66771 -36.33872 -34.46576 -32.35927 -30.63625 -29.10902 -28.36553 -27.97809 -24.96909 -24.81330 -23.53859 -20.88811 -20.30087 -19.46564 -18.57425 -18.41785 -17.89923 -17.09069 -16.44155 -16.27720 -15.98723 -15.59402 -14.94132 -14.80519 -14.35939 -14.16789 -13.92774 -13.78602 -13.70364 -13.50828 -13.39154 -13.13171 -12.95234 -12.88660 -12.71871 -12.63912 -12.49036 -12.26472 -12.06692 -11.83772 -11.68507 -11.60637 -11.54735 -11.39161 -10.77517 -10.54913 -9.66315 -9.41777 -9.20759 -8.19822 -6.34289 0.13095 0.81331 1.07290 1.40410 1.44168 1.53974 1.73941 1.80116 2.36414 2.52539 3.10574 3.84912 3.93561 3.98175 4.04250 4.07347 4.11004 4.36206 4.43094 4.56175 4.59544 4.65527 4.69013 4.76903 4.82697 4.83534 4.93934 4.95371 5.03924 5.12359 5.13331 5.15963 5.22385 5.32512 5.46938 5.47723 5.51706 5.60919 5.67539 5.87985 6.06820 6.58780 6.82824 7.32225 7.43725 8.85747 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.005901 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.955563 B = 4743.494072 C = 7442.723603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.253 3.747 8 C -0.545 4.545 9 H 0.051 0.949 10 C 0.024 3.976 11 N -0.919 5.919 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.277 1.277 16 C 0.516 3.484 17 O -0.588 6.588 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.143 4.143 21 C -0.209 4.209 22 S 0.115 5.885 23 C -0.217 4.217 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.032 0.968 37 H 0.268 0.732 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.190 0.810 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -7.992 -5.545 11.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.154 4.154 5 C -0.004 4.004 6 N -0.330 5.330 7 C 0.132 3.868 8 C -0.583 4.583 9 H 0.069 0.931 10 C -0.176 4.176 11 N -0.558 5.558 12 Si 0.779 3.221 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.202 1.202 16 C 0.305 3.695 17 O -0.470 6.470 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.173 4.173 21 C -0.345 4.345 22 S 0.378 5.622 23 C -0.352 4.352 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.155 0.845 41 H 0.207 0.793 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.131 -9.609 -5.827 12.802 hybrid contribution 1.741 2.026 0.288 2.686 sum -4.391 -7.583 -5.539 10.367 Atomic orbital electron populations 1.21788 0.93970 1.01724 1.02326 1.21039 0.96692 0.96369 0.96856 1.21879 1.00886 0.95483 1.02178 1.21871 0.94626 0.99970 0.98908 1.21444 0.94572 0.97017 0.87368 1.48254 1.62988 1.06038 1.15673 1.19094 0.94655 0.90995 0.82085 1.21683 0.96151 1.34865 1.05623 0.93069 1.25603 1.01847 0.95419 0.94759 1.70007 1.37691 1.38477 1.09605 0.85571 0.80324 0.78042 0.78139 1.19641 1.20432 1.20234 1.20697 0.77023 0.82196 0.89547 1.90575 1.53375 1.66565 1.36485 1.20288 1.04352 0.90541 0.96342 1.18585 0.94579 0.95143 1.02111 1.20190 0.99776 0.94757 1.02603 1.25833 1.01172 0.98758 1.08691 1.83766 1.08718 1.07378 1.62356 1.25582 1.03173 0.96783 1.09689 0.92720 0.91172 0.93013 0.91239 0.93255 0.91142 0.92957 0.93330 0.92529 0.90648 0.91969 0.96117 0.94995 0.92302 0.87878 0.88060 0.84473 0.79293 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 2 C -0.09 -2.33 2.92 -10.79 -0.03 -2.36 16 3 C -0.15 -3.57 8.95 71.98 0.64 -2.92 16 4 C -0.12 -3.72 5.01 30.60 0.15 -3.57 16 5 C 0.12 4.48 5.16 86.38 0.45 4.92 16 6 N -0.60 -25.50 2.46 -826.13 -2.03 -27.53 16 7 C 0.25 11.94 4.96 85.63 0.43 12.36 16 8 C -0.54 -27.98 9.28 25.60 0.24 -27.74 16 9 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 10 C 0.02 1.26 5.46 84.66 0.46 1.72 16 11 N -0.92 -49.82 13.29 21.45 0.28 -49.54 16 12 Si 0.95 41.33 29.54 68.60 2.03 43.35 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 16 C 0.52 21.84 7.67 87.66 0.67 22.51 16 17 O -0.59 -26.98 15.61 -3.04 -0.05 -27.03 16 18 C -0.07 -2.75 4.51 29.10 0.13 -2.61 16 19 C -0.09 -3.10 4.29 -20.92 -0.09 -3.19 16 20 C -0.14 -4.45 9.98 21.22 0.21 -4.24 16 21 C -0.21 -5.34 11.23 66.72 0.75 -4.59 16 22 S 0.11 2.82 23.34 -56.49 -1.32 1.50 16 23 C -0.22 -6.50 10.98 66.72 0.73 -5.77 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.30 6.56 -2.39 -0.02 1.28 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.85 6.49 -2.39 -0.02 2.84 16 34 H 0.06 2.41 7.42 -2.39 -0.02 2.40 16 35 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 36 H 0.03 1.55 6.44 -2.38 -0.02 1.53 16 37 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 38 H 0.10 3.65 7.38 -2.39 -0.02 3.63 16 39 H 0.10 4.00 7.99 -2.39 -0.02 3.98 16 40 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.17 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -59.61 360.94 5.30 -54.30 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.98 Total: 22.80 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 5.41 Total: -17.86 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.74 Total: -77.07 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.32 Total: 1.50 kcal Total: -59.61 5.30 -54.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171549245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.677 kcal (2) G-P(sol) polarization free energy of solvation -59.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds