Wall clock time and date at job start Tue Mar 31 2020 08:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46881 * 2 1 4 4 H 1.09002 * 109.47163 * 54.99920 * 3 2 1 5 5 O 1.42898 * 109.47402 * 295.00204 * 3 2 1 6 6 C 1.35955 * 117.00350 * 99.42843 * 5 3 2 7 7 C 1.38661 * 120.06003 * 354.33669 * 6 5 3 8 8 C 1.38185 * 119.96754 * 180.27417 * 7 6 5 9 9 C 1.38264 * 120.09513 * 359.97438 * 8 7 6 10 10 C 1.38255 * 120.12685 * 0.02562 * 9 8 7 11 11 C 1.38337 * 120.02841 * 0.02562 * 10 9 8 12 12 F 1.35103 * 120.04370 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47350 * 175.00171 * 3 2 1 14 14 O 1.21269 * 120.00295 * 119.99826 * 13 3 2 15 15 N 1.34774 * 119.99422 * 300.00118 * 13 3 2 16 16 C 1.46509 * 119.99937 * 179.97438 * 15 13 3 17 17 H 1.09004 * 109.46464 * 324.99894 * 16 15 13 18 18 C 1.52995 * 109.46885 * 84.99928 * 16 15 13 19 19 C 1.50698 * 109.47298 * 205.00041 * 16 15 13 20 20 H 1.08004 * 119.99658 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99819 * 179.97438 * 19 16 15 22 22 N 1.31516 * 120.00409 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 119.99901 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.47122 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47027 * 120.00314 * 23 21 19 26 26 H 1.48501 * 109.46977 * 240.00420 * 23 21 19 27 27 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47097 * 299.99512 * 1 2 3 29 29 H 1.08996 * 109.47267 * 60.00410 * 1 2 3 30 30 H 1.08999 * 109.47301 * 240.00007 * 2 1 3 31 31 H 1.08995 * 109.46998 * 120.00067 * 2 1 3 32 32 H 1.08002 * 120.01326 * 0.29520 * 7 6 5 33 33 H 1.07997 * 119.95093 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.93227 * 180.02562 * 9 8 7 35 35 H 1.07995 * 119.98500 * 179.97438 * 10 9 8 36 36 H 0.97003 * 120.00757 * 359.97438 * 15 13 3 37 37 H 1.08996 * 109.47228 * 60.00124 * 18 16 15 38 38 H 1.09003 * 109.47139 * 180.02562 * 18 16 15 39 39 H 1.09003 * 109.47131 * 299.99873 * 18 16 15 40 40 H 0.96991 * 119.99722 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5662 2.8854 -1.1834 7 6 -0.1982 2.9643 -0.0292 8 6 -1.3147 3.7778 0.0050 9 6 -1.6706 4.5138 -1.1100 10 6 -0.9113 4.4382 -2.2629 11 6 0.2069 3.6246 -2.3032 12 9 0.9494 3.5509 -3.4295 13 6 3.5419 1.4444 0.1238 14 8 4.2216 1.9436 -0.7477 15 7 4.1297 0.8912 1.2031 16 6 5.5898 0.8925 1.3233 17 1 6.0357 0.7733 0.3358 18 6 6.0500 2.2176 1.9342 19 6 6.0219 -0.2466 2.2103 20 1 5.2828 -0.9058 2.6411 21 6 7.3608 -0.4477 2.4710 22 7 8.2608 0.3548 1.9461 23 14 7.8963 -1.8592 3.5712 24 1 6.7002 -2.6086 4.0325 25 1 8.7871 -2.7704 2.8088 26 1 8.6274 -1.3209 4.7463 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.0791 2.3904 0.8427 33 1 -1.9101 3.8387 0.9039 34 1 -2.5436 5.1491 -1.0802 35 1 -1.1916 5.0138 -3.1326 36 1 3.5861 0.4921 1.9004 37 1 5.6041 2.3367 2.9216 38 1 7.1364 2.2188 2.0232 39 1 5.7375 3.0414 1.2926 40 1 9.2026 0.2135 2.1298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175475609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:01 Heat of formation + Delta-G solvation = -117.436980 kcal Electronic energy + Delta-G solvation = -23864.478603 eV Core-core repulsion = 20172.313836 eV Total energy + Delta-G solvation = -3692.164767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.83135 -41.77509 -40.27246 -38.43384 -36.74373 -35.06835 -34.09991 -31.70268 -31.17800 -30.82344 -28.23148 -27.35352 -24.44446 -23.65427 -23.45284 -22.28036 -21.15401 -19.77396 -19.26001 -18.02767 -17.80360 -17.43786 -17.13244 -16.98768 -16.33648 -16.23971 -15.87613 -15.55398 -15.37697 -15.09132 -14.76520 -14.47304 -14.14326 -13.81652 -13.74601 -13.35077 -13.13315 -13.02079 -12.89890 -12.88036 -12.75459 -12.62952 -12.35644 -12.30536 -12.11128 -11.99787 -11.57751 -11.12779 -10.75088 -10.60388 -9.90290 -9.86714 -9.20426 -8.18744 -6.36984 0.14319 0.26604 1.44989 1.45756 1.55107 1.59111 1.70405 2.38400 2.61601 2.66198 3.12209 3.26346 3.52674 3.64273 3.72729 3.85777 3.96552 4.18221 4.31755 4.36763 4.40646 4.55087 4.71213 4.73554 4.87304 4.95452 5.02417 5.04825 5.10530 5.11575 5.27695 5.32292 5.37835 5.44102 5.55020 5.62215 5.71245 5.85786 6.05575 6.25422 6.69953 6.84121 7.28539 7.44533 8.88130 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.003457 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.544933 B = 8097.015282 C = 8460.608200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.074 3.926 4 H 0.133 0.867 5 O -0.311 6.311 6 C 0.074 3.926 7 C -0.189 4.189 8 C -0.078 4.078 9 C -0.123 4.123 10 C -0.116 4.116 11 C 0.023 3.977 12 F -0.158 7.158 13 C 0.493 3.507 14 O -0.591 6.591 15 N -0.692 5.692 16 C 0.270 3.730 17 H -0.005 1.005 18 C -0.135 4.135 19 C -0.544 4.544 20 H 0.080 0.920 21 C 0.012 3.988 22 N -0.920 5.920 23 Si 0.976 3.024 24 H -0.255 1.255 25 H -0.286 1.286 26 H -0.279 1.279 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.160 0.840 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.409 0.591 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.007 0.993 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.695 4.016 1.139 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.015 3.985 4 H 0.151 0.849 5 O -0.224 6.224 6 C 0.028 3.972 7 C -0.207 4.207 8 C -0.096 4.096 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.004 3.996 12 F -0.137 7.137 13 C 0.279 3.721 14 O -0.472 6.472 15 N -0.342 5.342 16 C 0.167 3.833 17 H 0.013 0.987 18 C -0.194 4.194 19 C -0.582 4.582 20 H 0.098 0.902 21 C -0.188 4.188 22 N -0.558 5.558 23 Si 0.800 3.200 24 H -0.179 1.179 25 H -0.213 1.213 26 H -0.204 1.204 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.177 0.823 33 H 0.189 0.811 34 H 0.189 0.811 35 H 0.176 0.824 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.851 4.337 0.317 24.244 hybrid contribution 1.250 -0.713 0.040 1.439 sum -22.601 3.624 0.357 22.892 Atomic orbital electron populations 1.21901 0.92203 1.03686 1.02628 1.22020 0.99012 0.91884 1.04333 1.22567 0.90677 0.97132 0.88101 0.84940 1.86243 1.43181 1.58830 1.34172 1.19513 0.88947 0.93159 0.95612 1.21589 0.97813 1.04463 0.96812 1.21510 0.94833 0.93201 1.00011 1.21413 1.00836 1.00537 0.91326 1.21354 0.92468 0.97722 1.01890 1.17684 0.95811 1.03831 0.82311 1.91444 1.76661 1.95646 1.49910 1.21073 0.90693 0.78274 0.82072 1.90677 1.66762 1.47543 1.42194 1.46143 1.09076 1.57504 1.21523 1.18409 0.75450 0.94443 0.95043 0.98745 1.21913 1.03052 0.96091 0.98302 1.21556 0.93190 1.12998 1.30446 0.90188 1.25854 0.96493 0.99125 0.97305 1.70073 1.01747 1.38992 1.44998 0.85240 0.78550 0.78297 0.77900 1.17872 1.21269 1.20447 0.90351 0.89706 0.93620 0.92336 0.87561 0.82299 0.81116 0.81138 0.82368 0.75422 0.93409 0.91397 0.97385 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.48 71.98 0.61 -1.84 16 2 C -0.13 -3.18 5.59 30.59 0.17 -3.01 16 3 C 0.07 2.24 2.54 29.85 0.08 2.31 16 4 H 0.13 2.97 5.42 -2.39 -0.01 2.96 16 5 O -0.31 -11.08 8.98 -74.01 -0.66 -11.74 16 6 C 0.07 2.08 5.66 22.53 0.13 2.21 16 7 C -0.19 -3.51 7.36 22.36 0.16 -3.35 16 8 C -0.08 -0.97 10.04 22.26 0.22 -0.74 16 9 C -0.12 -1.54 10.04 22.28 0.22 -1.31 16 10 C -0.12 -2.17 10.02 22.30 0.22 -1.95 16 11 C 0.02 0.66 7.31 22.45 0.16 0.82 16 12 F -0.16 -5.52 17.11 44.97 0.77 -4.75 16 13 C 0.49 20.84 7.20 87.66 0.63 21.47 16 14 O -0.59 -32.27 16.16 16.04 0.26 -32.01 16 15 N -0.69 -28.37 4.93 -446.09 -2.20 -30.57 16 16 C 0.27 14.09 2.56 44.24 0.11 14.20 16 17 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 18 C -0.13 -6.90 9.26 71.98 0.67 -6.24 16 19 C -0.54 -28.28 8.73 25.60 0.22 -28.05 16 20 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 21 C 0.01 0.65 5.30 84.65 0.45 1.10 16 22 N -0.92 -53.00 11.32 21.45 0.24 -52.75 16 23 Si 0.98 41.36 29.54 68.60 2.03 43.39 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 0.96 6.74 -2.39 -0.02 0.95 16 29 H 0.04 0.91 6.53 -2.39 -0.02 0.89 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 2.11 7.43 -2.39 -0.02 2.10 16 32 H 0.16 2.27 4.29 -2.91 -0.01 2.25 16 33 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.41 13.20 7.90 -92.71 -0.73 12.47 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -77.86 334.20 4.84 -73.02 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.34 Total: 19.80 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 4.07 Total: -4.39 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.96 Total: -83.32 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.41 Total: -43.75 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.77 Total: -4.75 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -77.86 4.84 -73.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.418 kcal (2) G-P(sol) polarization free energy of solvation -77.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds