Wall clock time and date at job start Tue Mar 31 2020 08:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46912 * 2 1 4 4 H 1.08994 * 109.47013 * 304.99937 * 3 2 1 5 5 O 1.42897 * 109.46843 * 65.00452 * 3 2 1 6 6 C 1.35956 * 116.99613 * 260.43060 * 5 3 2 7 7 C 1.38666 * 120.06452 * 5.67291 * 6 5 3 8 8 C 1.38183 * 119.96605 * 179.71981 * 7 6 5 9 9 C 1.38256 * 120.09535 * 0.55411 * 8 7 6 10 10 C 1.38254 * 120.13238 * 359.72147 * 9 8 7 11 11 C 1.38335 * 120.02284 * 0.02562 * 10 9 8 12 12 F 1.35104 * 120.04473 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46722 * 185.00095 * 3 2 1 14 14 O 1.21281 * 120.00052 * 244.99971 * 13 3 2 15 15 N 1.34784 * 120.00331 * 65.00202 * 13 3 2 16 16 C 1.46494 * 120.00022 * 179.97438 * 15 13 3 17 17 H 1.09002 * 109.47544 * 325.00159 * 16 15 13 18 18 C 1.53000 * 109.47250 * 85.00232 * 16 15 13 19 19 C 1.50695 * 109.47243 * 204.99944 * 16 15 13 20 20 H 1.08004 * 119.99861 * 0.02562 * 19 16 15 21 21 C 1.37881 * 120.00431 * 180.02562 * 19 16 15 22 22 N 1.31508 * 119.99862 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99951 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47284 * 59.99889 * 23 21 19 25 25 H 1.48501 * 109.46931 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47250 * 299.99715 * 23 21 19 27 27 H 1.09007 * 109.47306 * 59.99723 * 1 2 3 28 28 H 1.08994 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47124 * 300.00203 * 1 2 3 30 30 H 1.08999 * 109.46876 * 240.00515 * 2 1 3 31 31 H 1.08994 * 109.47381 * 120.00153 * 2 1 3 32 32 H 1.07994 * 120.01057 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.94360 * 180.27632 * 8 7 6 34 34 H 1.08003 * 119.93541 * 179.74449 * 9 8 7 35 35 H 1.07990 * 119.98690 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99711 * 359.97438 * 15 13 3 37 37 H 1.09003 * 109.47377 * 59.99785 * 18 16 15 38 38 H 1.09004 * 109.47235 * 299.99909 * 18 16 15 39 39 H 1.09000 * 109.47516 * 180.02562 * 18 16 15 40 40 H 0.97003 * 120.00345 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 0.5680 2.8876 1.1829 7 6 -0.1952 2.9688 0.0279 8 6 -1.3100 3.7845 -0.0068 9 6 -1.6593 4.5288 1.1047 10 6 -0.8980 4.4554 2.2564 11 6 0.2161 3.6365 2.2986 12 9 0.9600 3.5639 3.4241 13 6 3.5419 1.4443 -0.1239 14 8 4.2250 1.8611 0.7875 15 7 4.1260 0.9828 -1.2474 16 6 5.5860 0.9851 -1.3680 17 1 5.9912 1.8604 -0.8603 18 6 6.1526 -0.2837 -0.7276 19 6 5.9697 1.0268 -2.8247 20 1 5.2027 1.0499 -3.5847 21 6 7.2999 1.0357 -3.1873 22 7 8.2339 1.0081 -2.2619 23 14 7.7754 1.0882 -4.9930 24 1 7.2261 2.3202 -5.6139 25 1 9.2554 1.0891 -5.1153 26 1 7.2228 -0.1038 -5.6853 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.0794 2.3916 -0.8425 33 1 -1.9067 3.8440 -0.9050 34 1 -2.5288 5.1687 1.0733 35 1 -1.1728 5.0381 3.1231 36 1 3.5797 0.6492 -1.9762 37 1 5.7474 -1.1591 -1.2353 38 1 5.8751 -0.3140 0.3261 39 1 7.2389 -0.2819 -0.8169 40 1 9.1698 1.0140 -2.5170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175475628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:04 Heat of formation + Delta-G solvation = -96.825471 kcal Electronic energy + Delta-G solvation = -23862.723964 eV Core-core repulsion = 20171.452980 eV Total energy + Delta-G solvation = -3691.270985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.74173 -40.61594 -38.84524 -37.35917 -34.81325 -33.87524 -32.31199 -30.87294 -30.12232 -29.22818 -27.00424 -25.28284 -23.57899 -22.60759 -22.16221 -20.84667 -19.46941 -18.76057 -17.69109 -17.00296 -16.47263 -16.14408 -15.69578 -15.45112 -15.13447 -14.97256 -14.70851 -14.39614 -14.02262 -13.77778 -13.43383 -13.04515 -12.91300 -12.53823 -12.34617 -12.22004 -11.95836 -11.80664 -11.71316 -11.55513 -11.13890 -11.10076 -10.95660 -10.80733 -10.60943 -10.36162 -10.26544 -9.15383 -9.10150 -9.01768 -8.59208 -8.24556 -8.00229 -6.15405 -4.25565 0.94749 1.09827 2.80867 3.19017 3.23296 3.28917 3.29831 3.41566 3.97978 4.16766 4.33189 4.52386 4.65055 4.66577 4.76161 4.99407 5.03333 5.06287 5.16745 5.17050 5.34153 5.46724 5.54707 5.74373 5.83754 5.87079 5.94283 5.98641 6.11124 6.18689 6.48903 6.78686 6.92624 7.10329 7.20463 7.38039 7.51050 7.64382 7.86791 8.10744 8.55574 8.72406 9.01196 9.41765 10.90519 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.003511 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.424523 B = 7973.387621 C = 8120.621895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.061 3.939 4 H 0.099 0.901 5 O -0.272 6.272 6 C 0.106 3.894 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.118 4.118 11 C 0.067 3.933 12 F -0.130 7.130 13 C 0.500 3.500 14 O -0.529 6.529 15 N -0.703 5.703 16 C 0.266 3.734 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.389 0.611 37 H 0.027 0.973 38 H 0.015 0.985 39 H 0.091 0.909 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.890 2.030 2.823 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.002 3.998 4 H 0.117 0.883 5 O -0.184 6.184 6 C 0.059 3.941 7 C -0.208 4.208 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.136 4.136 11 C 0.048 3.952 12 F -0.109 7.109 13 C 0.283 3.717 14 O -0.406 6.406 15 N -0.353 5.353 16 C 0.165 3.835 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.575 4.575 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.221 0.779 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.110 0.890 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.967 2.276 3.719 20.437 hybrid contribution 0.144 -0.192 -1.334 1.356 sum -19.822 2.084 2.385 20.074 Atomic orbital electron populations 1.21938 0.94836 1.02436 1.02051 1.21969 0.96819 0.94168 1.04582 1.22622 0.95243 0.94893 0.87091 0.88344 1.86308 1.41308 1.57499 1.33248 1.19167 0.88766 0.92196 0.93975 1.21343 0.97667 1.04018 0.97735 1.20992 0.95941 0.95153 0.98645 1.20891 1.00702 1.01197 0.92616 1.21013 0.93748 0.98735 1.00152 1.17041 0.94151 1.01289 0.82764 1.91527 1.75556 1.95248 1.48539 1.20032 0.88126 0.79555 0.84017 1.90713 1.64469 1.46441 1.38939 1.46469 1.10734 1.62167 1.15909 1.18789 0.72669 0.95703 0.96377 0.93271 1.22086 1.04585 0.97768 0.96178 1.21151 0.92361 1.53082 0.90874 0.92069 1.24888 0.96207 0.94568 0.97987 1.69890 1.00555 1.48882 1.32613 0.86490 0.77474 0.78637 0.84381 1.20156 1.21089 1.20135 0.92340 0.91894 0.92279 0.89303 0.89985 0.83953 0.85103 0.85015 0.84209 0.77897 0.95368 0.96578 0.89036 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.49 37.16 0.32 -1.17 16 2 C -0.14 -1.67 5.61 -26.73 -0.15 -1.82 16 3 C 0.06 0.93 2.53 -27.88 -0.07 0.86 16 4 H 0.10 1.23 5.42 -51.93 -0.28 0.95 16 5 O -0.27 -4.66 8.98 -39.46 -0.35 -5.02 16 6 C 0.11 1.51 5.66 -39.18 -0.22 1.29 16 7 C -0.19 -2.06 7.38 -39.44 -0.29 -2.35 16 8 C -0.09 -0.78 10.04 -39.59 -0.40 -1.17 16 9 C -0.14 -1.15 10.04 -39.57 -0.40 -1.55 16 10 C -0.12 -1.21 10.02 -39.54 -0.40 -1.61 16 11 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 12 F -0.13 -2.11 17.11 2.25 0.04 -2.07 16 13 C 0.50 10.22 7.14 -10.98 -0.08 10.14 16 14 O -0.53 -13.50 16.17 -14.30 -0.23 -13.73 16 15 N -0.70 -14.31 4.97 -54.94 -0.27 -14.58 16 16 C 0.27 6.73 2.56 -69.09 -0.18 6.55 16 17 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 19 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 20 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -24.74 11.32 55.43 0.63 -24.12 16 23 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.06 0.46 6.74 -51.92 -0.35 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 30 H 0.09 0.96 7.77 -51.93 -0.40 0.56 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.14 1.33 4.28 -52.49 -0.22 1.10 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.39 6.56 8.24 -40.82 -0.34 6.22 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -32.58 334.93 -7.51 -40.10 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.15 Total: 5.13 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.20 Total: -6.09 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.35 Total: -38.70 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.59 Total: -18.75 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.58 -7.51 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.729 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds