Wall clock time and date at job start Tue Mar 31 2020 08:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47157 * 2 1 4 4 H 1.09011 * 109.47056 * 304.99756 * 3 2 1 5 5 O 1.42893 * 109.47239 * 65.00011 * 3 2 1 6 6 C 1.35961 * 117.00203 * 265.86773 * 5 3 2 7 7 C 1.38668 * 120.05894 * 357.69770 * 6 5 3 8 8 C 1.38188 * 119.96451 * 179.97438 * 7 6 5 9 9 C 1.38255 * 120.09481 * 359.73052 * 8 7 6 10 10 C 1.38254 * 120.13027 * 0.54498 * 9 8 7 11 11 C 1.38330 * 120.02768 * 359.45154 * 10 9 8 12 12 F 1.35098 * 120.04930 * 180.25590 * 11 10 9 13 13 C 1.50695 * 109.47433 * 185.00223 * 3 2 1 14 14 O 1.21275 * 120.00152 * 245.00334 * 13 3 2 15 15 N 1.34777 * 120.00214 * 64.99464 * 13 3 2 16 16 C 1.46502 * 120.00484 * 180.02562 * 15 13 3 17 17 H 1.09004 * 109.46673 * 34.99988 * 16 15 13 18 18 C 1.52996 * 109.47301 * 275.00407 * 16 15 13 19 19 C 1.50702 * 109.47288 * 155.00241 * 16 15 13 20 20 H 1.07995 * 119.99898 * 0.02562 * 19 16 15 21 21 C 1.37875 * 119.99998 * 180.02562 * 19 16 15 22 22 N 1.31514 * 119.99893 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00043 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46942 * 89.99987 * 23 21 19 25 25 H 1.48499 * 109.46975 * 209.99942 * 23 21 19 26 26 H 1.48503 * 109.46937 * 329.99579 * 23 21 19 27 27 H 1.08997 * 109.47323 * 299.99969 * 1 2 3 28 28 H 1.09000 * 109.47689 * 60.00286 * 1 2 3 29 29 H 1.09003 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46634 * 239.99810 * 2 1 3 31 31 H 1.08998 * 109.47050 * 120.00089 * 2 1 3 32 32 H 1.07998 * 120.01540 * 359.95163 * 7 6 5 33 33 H 1.07997 * 119.94398 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.93836 * 180.29490 * 9 8 7 35 35 H 1.07997 * 119.98978 * 179.72984 * 10 9 8 36 36 H 0.97005 * 120.00077 * 0.02562 * 15 13 3 37 37 H 1.08993 * 109.47153 * 179.97438 * 18 16 15 38 38 H 1.08998 * 109.47001 * 299.99894 * 18 16 15 39 39 H 1.09000 * 109.47278 * 59.99487 * 18 16 15 40 40 H 0.97001 * 120.00148 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6620 2.0813 1.2210 6 6 0.5053 2.7958 1.2114 7 6 -0.2250 2.9196 0.0392 8 6 -1.4006 3.6459 0.0318 9 6 -1.8528 4.2447 1.1930 10 6 -1.1250 4.1285 2.3626 11 6 0.0526 3.4027 2.3760 12 9 0.7615 3.2846 3.5200 13 6 3.5418 1.4443 -0.1239 14 8 4.2250 1.8610 0.7874 15 7 4.1260 0.9827 -1.2474 16 6 5.5860 0.9840 -1.3676 17 1 6.0309 0.7764 -0.3944 18 6 6.0559 2.3537 -1.8613 19 6 6.0101 -0.0768 -2.3505 20 1 5.2664 -0.6903 -2.8372 21 6 7.3475 -0.2641 -2.6283 22 7 8.2531 0.4833 -2.0360 23 14 7.8732 -1.5795 -3.8460 24 1 7.9263 -0.9974 -5.2111 25 1 9.2167 -2.0906 -3.4732 26 1 6.8945 -2.6961 -3.8216 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 0.1251 2.4490 -0.8677 33 1 -1.9689 3.7424 -0.8815 34 1 -2.7745 4.8077 1.1855 35 1 -1.4781 4.6009 3.2674 36 1 3.5796 0.6496 -1.9764 37 1 7.1422 2.3548 -1.9504 38 1 5.6111 2.5614 -2.8345 39 1 5.7492 3.1210 -1.1505 40 1 9.1940 0.3518 -2.2317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175475670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:10 Heat of formation + Delta-G solvation = -96.229024 kcal Electronic energy + Delta-G solvation = -23864.765291 eV Core-core repulsion = 20173.520170 eV Total energy + Delta-G solvation = -3691.245121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.75810 -40.64584 -38.85669 -37.37158 -34.82016 -33.84249 -32.31343 -30.88638 -30.15891 -29.22236 -27.00709 -25.29092 -23.58289 -22.61611 -22.18666 -20.79566 -19.50472 -18.76187 -17.68648 -17.00964 -16.49025 -16.21369 -15.67558 -15.44708 -15.22981 -14.90415 -14.69913 -14.42455 -13.98442 -13.75935 -13.44192 -13.06316 -12.94139 -12.50080 -12.44500 -12.20497 -11.90258 -11.84958 -11.69177 -11.56520 -11.17644 -11.09716 -10.97329 -10.77439 -10.61172 -10.35603 -10.27417 -9.13955 -9.09628 -9.03381 -8.60032 -8.25427 -8.00704 -6.15889 -4.25906 0.93430 1.09132 2.79092 3.18175 3.22006 3.29057 3.30949 3.39328 3.98067 4.16213 4.32665 4.50302 4.64680 4.65164 4.77002 4.99757 5.02029 5.06494 5.16206 5.18130 5.33537 5.46440 5.55809 5.75337 5.84484 5.86017 5.95297 5.97819 6.13157 6.17540 6.47788 6.77684 6.91453 7.09661 7.19387 7.37192 7.50592 7.64047 7.86129 8.10070 8.54924 8.72187 9.00531 9.41489 10.90109 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028089 B = 0.003430 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.574778 B = 8160.958590 C = 8499.848770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.062 3.938 4 H 0.098 0.902 5 O -0.272 6.272 6 C 0.108 3.892 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.137 4.137 10 C -0.117 4.117 11 C 0.066 3.934 12 F -0.130 7.130 13 C 0.502 3.498 14 O -0.529 6.529 15 N -0.703 5.703 16 C 0.266 3.734 17 H 0.050 0.950 18 C -0.148 4.148 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.389 0.611 37 H 0.092 0.908 38 H 0.027 0.973 39 H 0.015 0.985 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.157 3.990 1.910 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.002 3.998 4 H 0.115 0.885 5 O -0.183 6.183 6 C 0.060 3.940 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.155 4.155 10 C -0.136 4.136 11 C 0.046 3.954 12 F -0.109 7.109 13 C 0.285 3.715 14 O -0.405 6.405 15 N -0.353 5.353 16 C 0.165 3.835 17 H 0.068 0.932 18 C -0.207 4.207 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.221 0.779 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.229 4.271 2.793 20.863 hybrid contribution 0.167 -0.852 -1.048 1.361 sum -20.062 3.419 1.745 20.426 Atomic orbital electron populations 1.21956 0.94864 1.02439 1.02019 1.22006 0.96785 0.94255 1.04743 1.22603 0.95348 0.94788 0.87076 0.88454 1.86323 1.35561 1.62059 1.34395 1.19155 0.87694 0.93602 0.93503 1.21311 0.97519 1.04587 0.97327 1.20987 0.95287 0.95875 0.98537 1.20885 1.00684 1.01889 0.92029 1.21010 0.93224 0.99130 1.00234 1.17021 0.93478 1.03815 0.81085 1.91524 1.77669 1.94628 1.47079 1.19944 0.87982 0.79661 0.83924 1.90713 1.64425 1.46259 1.39135 1.46463 1.10736 1.62019 1.16038 1.18800 0.72758 0.93880 0.98112 0.93200 1.22092 1.04562 0.96599 0.97429 1.21184 0.92529 1.18111 1.25527 0.91990 1.24892 0.96337 0.96293 0.96172 1.69902 1.01310 1.38718 1.42018 0.86429 0.78096 0.81501 0.80962 1.20527 1.21037 1.19826 0.92367 0.92314 0.91907 0.89203 0.89943 0.84010 0.85113 0.85026 0.84219 0.77882 0.88993 0.95382 0.96621 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.45 37.16 0.31 -1.22 16 2 C -0.14 -1.75 5.61 -26.73 -0.15 -1.90 16 3 C 0.06 0.94 2.57 -27.89 -0.07 0.86 16 4 H 0.10 1.19 5.38 -51.92 -0.28 0.91 16 5 O -0.27 -4.66 9.07 -39.48 -0.36 -5.01 16 6 C 0.11 1.51 5.34 -39.17 -0.21 1.30 16 7 C -0.19 -2.02 7.16 -39.44 -0.28 -2.30 16 8 C -0.09 -0.75 10.04 -39.59 -0.40 -1.15 16 9 C -0.14 -1.13 10.04 -39.57 -0.40 -1.53 16 10 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 11 C 0.07 0.90 7.31 -39.30 -0.29 0.62 16 12 F -0.13 -2.08 17.11 2.25 0.04 -2.04 16 13 C 0.50 10.24 7.14 -10.99 -0.08 10.16 16 14 O -0.53 -13.46 16.17 -14.30 -0.23 -13.69 16 15 N -0.70 -14.26 4.97 -54.93 -0.27 -14.53 16 16 C 0.27 6.70 2.56 -69.08 -0.18 6.53 16 17 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 18 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 19 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 23 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.06 0.64 6.27 -51.93 -0.33 0.31 16 28 H 0.06 0.48 6.80 -51.93 -0.35 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.02 7.77 -51.92 -0.40 0.61 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.14 1.30 4.54 -52.49 -0.24 1.06 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.39 6.54 8.24 -40.82 -0.34 6.20 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -32.49 334.48 -7.51 -39.99 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.15 Total: 5.09 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.18 Total: -6.07 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.35 Total: -38.61 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.59 Total: -18.70 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.49 -7.51 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.237 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds