Wall clock time and date at job start Tue Mar 31 2020 08:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47157 * 2 1 4 4 H 1.09011 * 109.47056 * 304.99756 * 3 2 1 5 5 O 1.42893 * 109.47239 * 65.00011 * 3 2 1 6 6 C 1.35961 * 117.00203 * 265.86773 * 5 3 2 7 7 C 1.38668 * 120.05894 * 357.69770 * 6 5 3 8 8 C 1.38188 * 119.96451 * 179.97438 * 7 6 5 9 9 C 1.38255 * 120.09481 * 359.73052 * 8 7 6 10 10 C 1.38254 * 120.13027 * 0.54498 * 9 8 7 11 11 C 1.38330 * 120.02768 * 359.45154 * 10 9 8 12 12 F 1.35098 * 120.04930 * 180.25590 * 11 10 9 13 13 C 1.50695 * 109.47433 * 185.00223 * 3 2 1 14 14 O 1.21275 * 120.00152 * 245.00334 * 13 3 2 15 15 N 1.34777 * 120.00214 * 64.99464 * 13 3 2 16 16 C 1.46502 * 120.00484 * 180.02562 * 15 13 3 17 17 H 1.09004 * 109.46673 * 34.99988 * 16 15 13 18 18 C 1.52996 * 109.47301 * 275.00407 * 16 15 13 19 19 C 1.50702 * 109.47288 * 155.00241 * 16 15 13 20 20 H 1.07995 * 119.99898 * 0.02562 * 19 16 15 21 21 C 1.37875 * 119.99998 * 180.02562 * 19 16 15 22 22 N 1.31514 * 119.99893 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00043 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46942 * 89.99987 * 23 21 19 25 25 H 1.48499 * 109.46975 * 209.99942 * 23 21 19 26 26 H 1.48503 * 109.46937 * 329.99579 * 23 21 19 27 27 H 1.08997 * 109.47323 * 299.99969 * 1 2 3 28 28 H 1.09000 * 109.47689 * 60.00286 * 1 2 3 29 29 H 1.09003 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46634 * 239.99810 * 2 1 3 31 31 H 1.08998 * 109.47050 * 120.00089 * 2 1 3 32 32 H 1.07998 * 120.01540 * 359.95163 * 7 6 5 33 33 H 1.07997 * 119.94398 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.93836 * 180.29490 * 9 8 7 35 35 H 1.07997 * 119.98978 * 179.72984 * 10 9 8 36 36 H 0.97005 * 120.00077 * 0.02562 * 15 13 3 37 37 H 1.08993 * 109.47153 * 179.97438 * 18 16 15 38 38 H 1.08998 * 109.47001 * 299.99894 * 18 16 15 39 39 H 1.09000 * 109.47278 * 59.99487 * 18 16 15 40 40 H 0.97001 * 120.00148 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6620 2.0813 1.2210 6 6 0.5053 2.7958 1.2114 7 6 -0.2250 2.9196 0.0392 8 6 -1.4006 3.6459 0.0318 9 6 -1.8528 4.2447 1.1930 10 6 -1.1250 4.1285 2.3626 11 6 0.0526 3.4027 2.3760 12 9 0.7615 3.2846 3.5200 13 6 3.5418 1.4443 -0.1239 14 8 4.2250 1.8610 0.7874 15 7 4.1260 0.9827 -1.2474 16 6 5.5860 0.9840 -1.3676 17 1 6.0309 0.7764 -0.3944 18 6 6.0559 2.3537 -1.8613 19 6 6.0101 -0.0768 -2.3505 20 1 5.2664 -0.6903 -2.8372 21 6 7.3475 -0.2641 -2.6283 22 7 8.2531 0.4833 -2.0360 23 14 7.8732 -1.5795 -3.8460 24 1 7.9263 -0.9974 -5.2111 25 1 9.2167 -2.0906 -3.4732 26 1 6.8945 -2.6961 -3.8216 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 0.1251 2.4490 -0.8677 33 1 -1.9689 3.7424 -0.8815 34 1 -2.7745 4.8077 1.1855 35 1 -1.4781 4.6009 3.2674 36 1 3.5796 0.6496 -1.9764 37 1 7.1422 2.3548 -1.9504 38 1 5.6111 2.5614 -2.8345 39 1 5.7492 3.1210 -1.1505 40 1 9.1940 0.3518 -2.2317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175475670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:09 Heat of formation + Delta-G solvation = -116.880765 kcal Electronic energy + Delta-G solvation = -23865.660818 eV Core-core repulsion = 20173.520170 eV Total energy + Delta-G solvation = -3692.140648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.82839 -41.79081 -40.28178 -38.43364 -36.74268 -35.02852 -34.11228 -31.70069 -31.20603 -30.82505 -28.23400 -27.35115 -24.44756 -23.65916 -23.45344 -22.24614 -21.17423 -19.77532 -19.24734 -18.01637 -17.79762 -17.43879 -17.11819 -17.04078 -16.35965 -16.24326 -15.86815 -15.55293 -15.35163 -15.09736 -14.76337 -14.46881 -14.12066 -13.83065 -13.74525 -13.34481 -13.13905 -13.03452 -12.92412 -12.87089 -12.72893 -12.62604 -12.36495 -12.31057 -12.14107 -12.01907 -11.55572 -11.13671 -10.75087 -10.59680 -9.89327 -9.86953 -9.18876 -8.18522 -6.36888 0.14882 0.27666 1.45298 1.46822 1.56378 1.59007 1.64648 2.38808 2.60478 2.68900 3.12314 3.26427 3.51748 3.64869 3.71824 3.85911 3.96908 4.17542 4.32763 4.37093 4.40036 4.54785 4.71137 4.72816 4.87395 4.96343 5.01085 5.04825 5.09415 5.12021 5.27903 5.31378 5.37709 5.44636 5.54754 5.62171 5.71423 5.85810 6.05537 6.25495 6.69734 6.83940 7.28459 7.44356 8.88129 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028089 B = 0.003430 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.574778 B = 8160.958590 C = 8499.848770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.075 3.925 4 H 0.134 0.866 5 O -0.312 6.312 6 C 0.075 3.925 7 C -0.188 4.188 8 C -0.077 4.077 9 C -0.124 4.124 10 C -0.115 4.115 11 C 0.023 3.977 12 F -0.158 7.158 13 C 0.496 3.504 14 O -0.590 6.590 15 N -0.692 5.692 16 C 0.270 3.730 17 H -0.005 1.005 18 C -0.135 4.135 19 C -0.545 4.545 20 H 0.080 0.920 21 C 0.013 3.987 22 N -0.920 5.920 23 Si 0.976 3.024 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.261 1.261 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.410 0.590 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.007 0.993 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.852 3.723 -0.946 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.015 3.985 4 H 0.151 0.849 5 O -0.225 6.225 6 C 0.029 3.971 7 C -0.207 4.207 8 C -0.095 4.095 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.003 3.997 12 F -0.137 7.137 13 C 0.281 3.719 14 O -0.471 6.471 15 N -0.342 5.342 16 C 0.167 3.833 17 H 0.013 0.987 18 C -0.194 4.194 19 C -0.583 4.583 20 H 0.098 0.902 21 C -0.187 4.187 22 N -0.558 5.558 23 Si 0.800 3.200 24 H -0.195 1.195 25 H -0.216 1.216 26 H -0.185 1.185 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.246 0.754 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.989 3.996 -0.094 24.320 hybrid contribution 1.222 -0.674 -0.108 1.400 sum -22.767 3.322 -0.202 23.009 Atomic orbital electron populations 1.21914 0.92200 1.03641 1.02653 1.22032 0.99000 0.92098 1.04266 1.22527 0.90822 0.96973 0.88142 0.84934 1.86255 1.37721 1.63301 1.35269 1.19491 0.87644 0.94816 0.95099 1.21550 0.97922 1.04800 0.96379 1.21496 0.94158 0.93743 1.00098 1.21403 1.01200 1.00645 0.90896 1.21347 0.91855 0.98067 1.02104 1.17653 0.95184 1.06220 0.80593 1.91442 1.78612 1.95094 1.48512 1.20968 0.90536 0.77764 0.82598 1.90678 1.66544 1.48748 1.41124 1.46127 1.09089 1.61974 1.17043 1.18403 0.75400 0.94159 0.95312 0.98697 1.21916 1.03076 0.96299 0.98095 1.21526 0.93183 1.18294 1.25314 0.90190 1.25852 0.96436 0.98461 0.97997 1.70068 1.01613 1.40505 1.43609 0.85287 0.77388 0.78765 0.78549 1.19471 1.21566 1.18492 0.93678 0.89635 0.90431 0.87622 0.92479 0.82416 0.81166 0.81170 0.82364 0.75411 0.91375 0.93441 0.97385 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.45 71.98 0.61 -1.90 16 2 C -0.14 -3.26 5.61 30.59 0.17 -3.09 16 3 C 0.07 2.24 2.57 29.84 0.08 2.32 16 4 H 0.13 2.94 5.38 -2.38 -0.01 2.93 16 5 O -0.31 -11.12 9.07 -74.12 -0.67 -11.79 16 6 C 0.08 2.10 5.34 22.53 0.12 2.22 16 7 C -0.19 -3.47 7.16 22.36 0.16 -3.31 16 8 C -0.08 -0.94 10.04 22.26 0.22 -0.72 16 9 C -0.12 -1.50 10.04 22.28 0.22 -1.28 16 10 C -0.12 -2.11 10.02 22.30 0.22 -1.89 16 11 C 0.02 0.65 7.31 22.45 0.16 0.81 16 12 F -0.16 -5.43 17.11 44.97 0.77 -4.66 16 13 C 0.50 20.90 7.14 87.66 0.63 21.52 16 14 O -0.59 -32.16 16.17 15.98 0.26 -31.90 16 15 N -0.69 -28.30 4.97 -446.10 -2.22 -30.52 16 16 C 0.27 14.10 2.56 44.24 0.11 14.21 16 17 H 0.00 -0.31 7.58 -2.39 -0.02 -0.32 16 18 C -0.14 -6.92 9.26 71.98 0.67 -6.25 16 19 C -0.55 -28.30 8.73 25.60 0.22 -28.08 16 20 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 21 C 0.01 0.67 5.30 84.65 0.45 1.11 16 22 N -0.92 -52.95 11.32 21.45 0.24 -52.70 16 23 Si 0.98 41.28 29.54 68.60 2.03 43.31 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 H 0.04 0.91 6.27 -2.39 -0.01 0.90 16 28 H 0.08 1.00 6.80 -2.39 -0.02 0.98 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 2.16 7.77 -2.38 -0.02 2.14 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.16 2.25 4.54 -2.91 -0.01 2.23 16 33 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.41 13.15 8.24 -92.70 -0.76 12.39 16 37 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -77.55 334.48 4.77 -72.79 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.31 Total: 19.79 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.05 Total: -4.32 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.97 Total: -83.22 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.41 Total: -43.69 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.77 Total: -4.66 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -77.55 4.77 -72.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.093 kcal (2) G-P(sol) polarization free energy of solvation -77.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds