Wall clock time and date at job start Tue Mar 31 2020 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32773 * 123.45745 * 2 1 4 4 S 1.75499 * 110.57472 * 179.73226 * 3 2 1 5 5 C 1.70449 * 92.44531 * 0.02562 * 4 3 2 6 6 C 1.36010 * 110.81794 * 0.02562 * 5 4 3 7 7 C 1.47184 * 123.46036 * 180.02562 * 6 5 4 8 8 O 1.21639 * 120.00199 * 128.63034 * 7 6 5 9 9 N 1.34773 * 119.99995 * 308.63142 * 7 6 5 10 10 C 1.46503 * 120.00307 * 4.77169 * 9 7 6 11 11 C 1.50702 * 109.47074 * 95.29919 * 10 9 7 12 12 H 1.07994 * 120.00179 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99687 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00539 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46615 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47524 * 119.99651 * 15 13 11 18 18 H 1.48496 * 109.47472 * 240.00449 * 15 13 11 19 19 C 1.46502 * 119.99948 * 184.77175 * 9 7 6 20 20 C 1.53002 * 109.46984 * 90.00324 * 19 9 7 21 21 C 1.53005 * 109.46896 * 180.02562 * 20 19 9 22 22 C 1.53001 * 109.47319 * 64.99410 * 21 20 19 23 23 C 1.53002 * 109.47081 * 184.99663 * 21 20 19 24 24 H 1.08997 * 109.47146 * 90.02148 * 1 2 3 25 25 H 1.09004 * 109.46940 * 210.02942 * 1 2 3 26 26 H 1.09004 * 109.46888 * 330.01771 * 1 2 3 27 27 H 1.07997 * 124.71181 * 359.75632 * 3 2 1 28 28 H 1.08007 * 124.58930 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.47461 * 215.30753 * 10 9 7 30 30 H 1.09001 * 109.46789 * 335.30429 * 10 9 7 31 31 H 0.97000 * 120.00571 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47105 * 209.99993 * 19 9 7 33 33 H 1.08994 * 109.47225 * 330.00017 * 19 9 7 34 34 H 1.08998 * 109.46657 * 299.99137 * 20 19 9 35 35 H 1.08994 * 109.47390 * 59.99793 * 20 19 9 36 36 H 1.09003 * 109.46963 * 304.99822 * 21 20 19 37 37 H 1.09001 * 109.46691 * 180.02562 * 22 21 20 38 38 H 1.08993 * 109.46860 * 299.99970 * 22 21 20 39 39 H 1.09003 * 109.46766 * 60.00292 * 22 21 20 40 40 H 1.09005 * 109.46624 * 59.99679 * 23 21 20 41 41 H 1.09001 * 109.46814 * 179.97438 * 23 21 20 42 42 H 1.08998 * 109.46906 * 299.99810 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0077 5 6 3.6411 -0.9598 0.0100 6 6 2.3032 -1.2049 0.0046 7 6 1.7263 -2.5589 0.0056 8 8 0.8791 -2.8585 0.8255 9 7 2.1365 -3.4669 -0.9019 10 6 3.2297 -3.1414 -1.8214 11 6 4.5293 -3.6573 -1.2594 12 1 4.5399 -4.1762 -0.3123 13 6 5.7047 -3.4669 -1.9544 14 7 5.6919 -2.8346 -3.1075 15 14 7.3156 -4.1070 -1.2582 16 1 7.0611 -4.7775 0.0423 17 1 7.9134 -5.0799 -2.2074 18 1 8.2529 -2.9731 -1.0559 19 6 1.4894 -4.7796 -0.9689 20 6 0.3106 -4.7179 -1.9423 21 6 -0.3656 -6.0887 -2.0118 22 6 -0.9808 -6.4235 -0.6516 23 6 -1.4646 -6.0619 -3.0760 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8902 0.5136 27 1 1.8375 2.1102 -0.0038 28 1 4.4044 -1.7239 0.0143 29 1 3.0417 -3.6071 -2.7887 30 1 3.2909 -2.0601 -1.9445 31 1 6.5189 -2.7002 -3.5962 32 1 2.2085 -5.5219 -1.3156 33 1 1.1288 -5.0579 0.0213 34 1 -0.4084 -3.9758 -1.5955 35 1 0.6712 -4.4396 -2.9325 36 1 0.3740 -6.8459 -2.2723 37 1 -1.4621 -7.4002 -0.7011 38 1 -0.1979 -6.4426 0.1064 39 1 -1.7204 -5.6663 -0.3911 40 1 -1.0261 -5.8233 -4.0451 41 1 -1.9460 -7.0385 -3.1258 42 1 -2.2041 -5.3047 -2.8155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176480397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:43 Heat of formation + Delta-G solvation = -31.709842 kcal Electronic energy + Delta-G solvation = -22292.650349 eV Core-core repulsion = 19170.416166 eV Total energy + Delta-G solvation = -3122.234183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45488 -37.06181 -36.12471 -34.76737 -32.60859 -30.84918 -29.02897 -27.30121 -27.03140 -26.93375 -24.02003 -23.14278 -22.20636 -19.82499 -19.51940 -17.62618 -17.02077 -16.53786 -16.06509 -15.31953 -14.93333 -14.58519 -14.43121 -13.65556 -13.51569 -13.43685 -13.13231 -12.76619 -12.71013 -12.40899 -12.26477 -12.07471 -11.90893 -11.68045 -11.58301 -11.43505 -11.22137 -11.02078 -10.97002 -10.74226 -10.68303 -10.51486 -10.44536 -10.25396 -10.02258 -9.73968 -9.07463 -8.65890 -8.23262 -7.80936 -7.65673 -6.24227 -4.32433 1.52706 2.13148 2.47537 2.70684 3.15968 3.25768 3.29509 3.67200 4.05351 4.30029 5.05330 5.07316 5.14051 5.16162 5.26947 5.44547 5.58320 5.73603 5.74652 5.83293 5.85513 5.91833 5.94000 6.01301 6.04497 6.13157 6.14610 6.28653 6.33293 6.37837 6.40989 6.43677 6.64809 6.70995 6.80145 6.84032 6.90724 7.22144 7.57151 7.70587 8.01643 8.35179 8.75128 9.03002 9.34898 10.81425 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.007068 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.803119 B = 3960.309592 C = 6139.417288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.058 4.058 3 C -0.257 4.257 4 S 0.146 5.854 5 C -0.168 4.168 6 C -0.157 4.157 7 C 0.581 3.419 8 O -0.569 6.569 9 N -0.588 5.588 10 C 0.232 3.768 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.883 5.883 15 Si 0.889 3.111 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.119 3.881 20 C -0.127 4.127 21 C -0.094 4.094 22 C -0.147 4.147 23 C -0.144 4.144 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.159 0.841 28 H 0.195 0.805 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.266 0.734 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 2.114 1.938 8.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.070 4.070 3 C -0.392 4.392 4 S 0.412 5.588 5 C -0.305 4.305 6 C -0.173 4.173 7 C 0.368 3.632 8 O -0.450 6.450 9 N -0.317 5.317 10 C 0.112 3.888 11 C -0.579 4.579 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.520 5.520 15 Si 0.716 3.284 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.004 4.004 20 C -0.166 4.166 21 C -0.113 4.113 22 C -0.204 4.204 23 C -0.202 4.202 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.177 0.823 28 H 0.211 0.789 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.227 2.885 2.180 8.081 hybrid contribution -0.060 -1.224 0.029 1.226 sum -7.286 1.661 2.208 7.792 Atomic orbital electron populations 1.20528 0.89804 1.03248 1.02051 1.19750 0.96671 0.90436 1.00174 1.25077 0.96805 1.01837 1.15466 1.82832 1.05520 0.99194 1.71249 1.26294 1.00618 1.01586 1.02051 1.19981 0.92418 0.94048 1.10886 1.17612 0.81061 0.83937 0.80612 1.90663 1.34755 1.80295 1.39329 1.48127 1.35315 1.13332 1.34885 1.19557 0.82997 0.97956 0.88298 1.21531 0.91702 1.37895 1.06813 0.91952 1.24945 0.99103 0.94856 0.94727 1.69937 1.27990 1.40477 1.13630 0.86565 0.83400 0.78992 0.79397 1.19535 1.20681 1.20648 1.21361 0.93982 0.85267 0.99771 1.21989 0.97715 0.96574 1.00280 1.21051 0.97283 0.97542 0.95409 1.21874 1.00938 1.00600 0.97001 1.21821 0.98517 1.01161 0.98680 0.91606 0.90054 0.91867 0.82342 0.78866 0.94966 0.93579 0.92456 0.90481 0.90699 0.92088 0.91837 0.91180 0.93323 0.92241 0.92783 0.92788 0.93078 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.96 36.01 0.36 -1.12 16 2 C -0.06 -1.02 6.01 -104.06 -0.63 -1.65 16 3 C -0.26 -4.01 10.91 28.86 0.31 -3.70 16 4 S 0.15 2.40 23.02 -107.50 -2.48 -0.08 16 5 C -0.17 -3.40 8.62 29.93 0.26 -3.14 16 6 C -0.16 -3.22 4.89 -104.63 -0.51 -3.74 16 7 C 0.58 12.77 7.04 -12.63 -0.09 12.68 16 8 O -0.57 -13.17 15.28 5.24 0.08 -13.09 16 9 N -0.59 -12.66 2.46 -176.41 -0.43 -13.09 16 10 C 0.23 5.51 4.69 -5.19 -0.02 5.48 16 11 C -0.54 -13.64 7.23 -34.44 -0.25 -13.89 16 12 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -23.64 13.29 55.43 0.74 -22.90 16 15 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.12 2.24 5.22 -4.04 -0.02 2.22 16 20 C -0.13 -2.05 5.01 -26.73 -0.13 -2.18 16 21 C -0.09 -1.24 2.92 -90.62 -0.26 -1.51 16 22 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 23 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.38 6.60 -51.93 -0.34 1.04 16 26 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 27 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.19 4.30 5.66 -52.48 -0.30 4.00 16 29 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.05 1.15 5.61 -51.93 -0.29 0.86 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 33 H 0.07 1.42 5.78 -51.93 -0.30 1.12 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -27.75 352.97 -8.81 -36.56 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.61 Total: 4.11 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.41 Total: -11.76 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.30 Total: -36.00 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.48 Total: -0.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.75 -8.81 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176480397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.851 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds