Wall clock time and date at job start Tue Mar 31 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32773 * 123.45745 * 2 1 4 4 S 1.75499 * 110.57472 * 179.73226 * 3 2 1 5 5 C 1.70449 * 92.44531 * 0.02562 * 4 3 2 6 6 C 1.36010 * 110.81794 * 0.02562 * 5 4 3 7 7 C 1.47184 * 123.46036 * 180.02562 * 6 5 4 8 8 O 1.21639 * 120.00199 * 128.63034 * 7 6 5 9 9 N 1.34773 * 119.99995 * 308.63142 * 7 6 5 10 10 C 1.46503 * 120.00307 * 4.77169 * 9 7 6 11 11 C 1.50702 * 109.47074 * 95.29919 * 10 9 7 12 12 H 1.07994 * 120.00179 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99687 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00539 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46615 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47524 * 119.99651 * 15 13 11 18 18 H 1.48496 * 109.47472 * 240.00449 * 15 13 11 19 19 C 1.46502 * 119.99948 * 184.77175 * 9 7 6 20 20 C 1.53002 * 109.46984 * 90.00324 * 19 9 7 21 21 C 1.53005 * 109.46896 * 180.02562 * 20 19 9 22 22 C 1.53001 * 109.47319 * 64.99410 * 21 20 19 23 23 C 1.53002 * 109.47081 * 184.99663 * 21 20 19 24 24 H 1.08997 * 109.47146 * 90.02148 * 1 2 3 25 25 H 1.09004 * 109.46940 * 210.02942 * 1 2 3 26 26 H 1.09004 * 109.46888 * 330.01771 * 1 2 3 27 27 H 1.07997 * 124.71181 * 359.75632 * 3 2 1 28 28 H 1.08007 * 124.58930 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.47461 * 215.30753 * 10 9 7 30 30 H 1.09001 * 109.46789 * 335.30429 * 10 9 7 31 31 H 0.97000 * 120.00571 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47105 * 209.99993 * 19 9 7 33 33 H 1.08994 * 109.47225 * 330.00017 * 19 9 7 34 34 H 1.08998 * 109.46657 * 299.99137 * 20 19 9 35 35 H 1.08994 * 109.47390 * 59.99793 * 20 19 9 36 36 H 1.09003 * 109.46963 * 304.99822 * 21 20 19 37 37 H 1.09001 * 109.46691 * 180.02562 * 22 21 20 38 38 H 1.08993 * 109.46860 * 299.99970 * 22 21 20 39 39 H 1.09003 * 109.46766 * 60.00292 * 22 21 20 40 40 H 1.09005 * 109.46624 * 59.99679 * 23 21 20 41 41 H 1.09001 * 109.46814 * 179.97438 * 23 21 20 42 42 H 1.08998 * 109.46906 * 299.99810 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0077 5 6 3.6411 -0.9598 0.0100 6 6 2.3032 -1.2049 0.0046 7 6 1.7263 -2.5589 0.0056 8 8 0.8791 -2.8585 0.8255 9 7 2.1365 -3.4669 -0.9019 10 6 3.2297 -3.1414 -1.8214 11 6 4.5293 -3.6573 -1.2594 12 1 4.5399 -4.1762 -0.3123 13 6 5.7047 -3.4669 -1.9544 14 7 5.6919 -2.8346 -3.1075 15 14 7.3156 -4.1070 -1.2582 16 1 7.0611 -4.7775 0.0423 17 1 7.9134 -5.0799 -2.2074 18 1 8.2529 -2.9731 -1.0559 19 6 1.4894 -4.7796 -0.9689 20 6 0.3106 -4.7179 -1.9423 21 6 -0.3656 -6.0887 -2.0118 22 6 -0.9808 -6.4235 -0.6516 23 6 -1.4646 -6.0619 -3.0760 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8902 0.5136 27 1 1.8375 2.1102 -0.0038 28 1 4.4044 -1.7239 0.0143 29 1 3.0417 -3.6071 -2.7887 30 1 3.2909 -2.0601 -1.9445 31 1 6.5189 -2.7002 -3.5962 32 1 2.2085 -5.5219 -1.3156 33 1 1.1288 -5.0579 0.0213 34 1 -0.4084 -3.9758 -1.5955 35 1 0.6712 -4.4396 -2.9325 36 1 0.3740 -6.8459 -2.2723 37 1 -1.4621 -7.4002 -0.7011 38 1 -0.1979 -6.4426 0.1064 39 1 -1.7204 -5.6663 -0.3911 40 1 -1.0261 -5.8233 -4.0451 41 1 -1.9460 -7.0385 -3.1258 42 1 -2.2041 -5.3047 -2.8155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176480397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:42 Heat of formation + Delta-G solvation = -44.688173 kcal Electronic energy + Delta-G solvation = -22293.213132 eV Core-core repulsion = 19170.416166 eV Total energy + Delta-G solvation = -3122.796966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11029 -38.42097 -37.55133 -36.44676 -34.52046 -32.24370 -30.49504 -29.03705 -28.38372 -28.00829 -25.50583 -25.02038 -23.68809 -21.12799 -20.86883 -19.22646 -18.53544 -18.45472 -17.70607 -16.97405 -16.31637 -16.18010 -16.04476 -14.99866 -14.80834 -14.75319 -14.44239 -14.33115 -14.19554 -14.06559 -13.68004 -13.41979 -13.24001 -13.14833 -12.90977 -12.84927 -12.75300 -12.68477 -12.52086 -12.26339 -12.08938 -11.94915 -11.80752 -11.58011 -11.54364 -11.43493 -10.79778 -10.62108 -9.65680 -9.48101 -9.12947 -8.23065 -6.37823 0.07078 0.77478 1.06462 1.25460 1.36234 1.40829 1.50335 2.03219 2.30002 2.49674 3.05725 3.78826 3.93532 3.96286 4.02128 4.06755 4.30103 4.38210 4.55022 4.60687 4.67193 4.71656 4.75928 4.79228 4.81469 4.89566 4.94119 5.00855 5.02273 5.05437 5.11431 5.13543 5.20192 5.31421 5.40960 5.46461 5.49682 5.57221 5.64621 5.83836 6.02850 6.52499 6.77568 7.24980 7.36643 8.82300 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.007068 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.803119 B = 3960.309592 C = 6139.417288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.083 4.083 3 C -0.236 4.236 4 S 0.194 5.806 5 C -0.201 4.201 6 C -0.178 4.178 7 C 0.575 3.425 8 O -0.587 6.587 9 N -0.592 5.592 10 C 0.252 3.748 11 C -0.544 4.544 12 H 0.050 0.950 13 C 0.031 3.969 14 N -0.910 5.910 15 Si 0.947 3.053 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.274 1.274 19 C 0.117 3.883 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.144 4.144 23 C -0.140 4.140 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.201 0.799 28 H 0.167 0.833 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.269 0.731 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 3.052 1.986 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.370 4.370 4 S 0.461 5.539 5 C -0.339 4.339 6 C -0.195 4.195 7 C 0.363 3.637 8 O -0.470 6.470 9 N -0.321 5.321 10 C 0.131 3.869 11 C -0.582 4.582 12 H 0.068 0.932 13 C -0.171 4.171 14 N -0.549 5.549 15 Si 0.773 3.227 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.199 1.199 19 C -0.006 4.006 20 C -0.154 4.154 21 C -0.110 4.110 22 C -0.201 4.201 23 C -0.198 4.198 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.218 0.782 28 H 0.184 0.816 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.640 3.816 2.228 8.826 hybrid contribution 0.078 -1.471 0.037 1.473 sum -7.562 2.345 2.265 8.235 Atomic orbital electron populations 1.20519 0.88216 1.03624 1.02662 1.19971 0.97947 0.89790 1.01738 1.25555 0.96004 1.03072 1.12370 1.82569 1.06017 0.95594 1.69722 1.26126 1.00060 1.03831 1.03886 1.20185 0.93108 0.94300 1.11886 1.17961 0.80805 0.84728 0.80191 1.90631 1.35641 1.80858 1.39902 1.48174 1.35030 1.14335 1.34529 1.19160 0.83259 0.96764 0.87714 1.21566 0.92614 1.37757 1.06299 0.93189 1.25557 1.01766 0.94897 0.94892 1.70016 1.28900 1.41381 1.14587 0.85663 0.79918 0.78572 0.78577 1.19714 1.20241 1.19889 1.21504 0.94655 0.84035 1.00376 1.21876 0.96423 0.98394 0.98673 1.21053 0.97871 0.95467 0.96610 1.21844 1.00445 1.01742 0.96066 1.21785 0.97822 1.02391 0.97775 0.90857 0.92510 0.88594 0.78188 0.81551 0.96824 0.94862 0.92168 0.90918 0.91021 0.93143 0.92731 0.90799 0.91015 0.93598 0.93235 0.92829 0.91078 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.64 9.96 71.24 0.71 -1.93 16 2 C -0.08 -2.83 6.01 -19.46 -0.12 -2.95 16 3 C -0.24 -6.65 10.91 66.64 0.73 -5.93 16 4 S 0.19 6.08 23.02 -56.49 -1.30 4.77 16 5 C -0.20 -8.27 8.62 67.30 0.58 -7.69 16 6 C -0.18 -7.41 4.89 -19.87 -0.10 -7.50 16 7 C 0.58 26.19 7.04 86.59 0.61 26.80 16 8 O -0.59 -28.09 15.28 -4.15 -0.06 -28.16 16 9 N -0.59 -26.63 2.46 -830.30 -2.04 -28.67 16 10 C 0.25 12.46 4.69 85.63 0.40 12.87 16 11 C -0.54 -28.28 7.23 25.60 0.19 -28.09 16 12 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 13 C 0.03 1.58 5.46 84.65 0.46 2.04 16 14 N -0.91 -49.29 13.29 21.45 0.28 -49.00 16 15 Si 0.95 41.20 29.54 68.60 2.03 43.23 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 C 0.12 4.56 5.22 86.38 0.45 5.01 16 20 C -0.12 -3.81 5.01 30.60 0.15 -3.66 16 21 C -0.09 -2.36 2.92 -10.79 -0.03 -2.39 16 22 C -0.14 -3.54 8.95 71.98 0.64 -2.90 16 23 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.92 6.60 -2.39 -0.02 1.91 16 26 H 0.10 2.09 8.13 -2.39 -0.02 2.07 16 27 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.17 7.73 5.66 -2.91 -0.02 7.71 16 29 H 0.01 0.72 8.11 -2.39 -0.02 0.70 16 30 H 0.03 1.74 5.61 -2.39 -0.01 1.72 16 31 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.07 2.85 8.07 -2.38 -0.02 2.83 16 33 H 0.07 2.83 5.78 -2.39 -0.01 2.82 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.24 6.56 -2.39 -0.02 1.22 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -60.74 352.97 5.24 -55.50 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 1.00 Total: 21.03 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 5.34 Total: -18.70 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.76 Total: -77.67 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.30 Total: 4.77 kcal Total: -60.74 5.24 -55.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176480397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal (2) G-P(sol) polarization free energy of solvation -60.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds