Wall clock time and date at job start Tue Mar 31 2020 06:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47229 * 2 1 4 4 C 1.37962 * 120.07592 * 269.22472 * 3 2 1 5 5 C 1.38352 * 120.14990 * 180.02562 * 4 3 2 6 6 C 1.38397 * 120.31218 * 359.97438 * 5 4 3 7 7 C 1.37906 * 120.15283 * 0.02562 * 6 5 4 8 8 C 1.39640 * 120.07951 * 89.23725 * 3 2 1 9 9 C 1.47683 * 120.15207 * 0.02562 * 8 3 2 10 10 O 1.21586 * 120.00068 * 313.25449 * 9 8 3 11 11 N 1.34781 * 119.99944 * 133.25494 * 9 8 3 12 12 C 1.36920 * 120.00166 * 5.48369 * 11 9 8 13 13 H 1.08000 * 120.00093 * 326.12826 * 12 11 9 14 14 C 1.38973 * 119.99835 * 146.12814 * 12 11 9 15 15 N 1.31380 * 120.00280 * 2.46869 * 14 12 11 16 16 Si 1.86809 * 119.99978 * 182.47383 * 14 12 11 17 17 H 1.48502 * 109.46937 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47096 * 119.99852 * 16 14 12 19 19 H 1.48499 * 109.46772 * 240.00080 * 16 14 12 20 20 C 1.39709 * 119.99511 * 185.48330 * 11 9 8 21 21 C 1.38988 * 120.07833 * 118.79113 * 20 11 9 22 22 C 1.38074 * 119.91825 * 179.76313 * 21 20 11 23 23 C 1.38304 * 120.08274 * 0.48549 * 22 21 20 24 24 C 1.38316 * 120.16045 * 359.76856 * 23 22 21 25 25 C 1.38078 * 120.07619 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46535 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46836 * 299.99556 * 1 2 3 28 28 H 1.08997 * 109.47413 * 60.00198 * 1 2 3 29 29 H 1.09002 * 109.47359 * 240.00431 * 2 1 3 30 30 H 1.08999 * 109.47562 * 120.00321 * 2 1 3 31 31 H 1.08002 * 119.92322 * 0.03789 * 4 3 2 32 32 H 1.08006 * 119.84118 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.92619 * 180.27778 * 6 5 4 34 34 H 1.08010 * 120.07923 * 180.02562 * 7 6 5 35 35 H 0.97003 * 120.00408 * 185.00779 * 15 14 12 36 36 H 1.07996 * 120.03781 * 359.97438 * 21 20 11 37 37 H 1.08004 * 119.96040 * 180.23422 * 22 21 20 38 38 H 1.08002 * 119.92430 * 179.74668 * 23 22 21 39 39 H 1.08001 * 119.96222 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.03638 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2781 2.0673 -1.1938 5 6 2.7398 3.3715 -1.1955 6 6 2.9579 4.0369 -0.0018 7 6 2.7165 3.4028 1.1988 8 6 2.2505 2.0860 1.2082 9 6 1.9905 1.4002 2.4901 10 8 0.9563 0.7811 2.6495 11 7 2.8997 1.4607 3.4832 12 6 4.0113 2.2484 3.3468 13 1 4.4667 2.3763 2.3759 14 6 4.5536 2.8833 4.4577 15 7 4.0290 2.6892 5.6465 16 14 6.0283 4.0129 4.2607 17 1 6.4268 4.0619 2.8310 18 1 5.6712 5.3783 4.7226 19 1 7.1596 3.4959 5.0719 20 6 2.7078 0.7195 4.6518 21 6 3.6307 -0.2526 5.0196 22 6 3.4403 -0.9798 6.1778 23 6 2.3279 -0.7489 6.9664 24 6 1.4046 0.2141 6.6009 25 6 1.5912 0.9488 5.4468 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.1094 1.5541 -2.1290 32 1 2.9309 3.8727 -2.1330 33 1 3.3142 5.0564 -0.0105 34 1 2.8868 3.9234 2.1298 35 1 4.3603 3.1874 6.4101 36 1 4.4973 -0.4365 4.4020 37 1 4.1589 -1.7327 6.4662 38 1 2.1794 -1.3220 7.8697 39 1 0.5369 0.3914 7.2188 40 1 0.8697 1.7002 5.1617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178189958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:58 Heat of formation + Delta-G solvation = 8.803274 kcal Electronic energy + Delta-G solvation = -23881.317608 eV Core-core repulsion = 20625.396254 eV Total energy + Delta-G solvation = -3255.921354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56162 -39.95539 -38.51395 -36.73960 -34.81723 -33.58820 -32.26410 -31.55027 -30.38898 -29.99178 -26.98251 -25.21527 -24.34828 -23.35628 -23.00755 -21.76800 -20.93275 -19.58269 -18.25476 -17.29451 -16.91510 -16.81788 -16.46936 -16.16960 -15.77019 -15.62395 -14.99678 -14.68286 -14.49521 -14.42979 -14.11710 -14.07664 -13.82783 -13.48210 -13.25934 -13.06829 -12.95924 -12.70895 -12.58811 -12.39712 -12.24185 -12.02639 -11.94732 -11.69985 -11.62287 -11.10662 -10.45699 -10.12091 -9.63826 -9.55044 -9.53159 -9.12414 -8.15792 -6.06774 0.21549 0.57364 0.79218 0.83940 1.38818 1.42986 1.54891 2.02581 2.25841 2.79413 2.97815 3.09003 3.32490 3.90329 4.00390 4.17668 4.23937 4.28948 4.31183 4.37037 4.41633 4.57109 4.66115 4.68633 4.74259 4.77982 4.89870 5.02634 5.09599 5.13027 5.17102 5.29796 5.34931 5.41742 5.48985 5.60926 5.66323 5.69224 5.78874 5.80175 5.86766 6.06338 6.16577 6.27940 6.58215 7.05752 7.45572 7.89487 8.72822 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.007608 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.055638 B = 3679.502399 C = 5364.976729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.059 4.059 4 C -0.129 4.129 5 C -0.097 4.097 6 C -0.141 4.141 7 C -0.080 4.080 8 C -0.126 4.126 9 C 0.506 3.494 10 O -0.600 6.600 11 N -0.416 5.416 12 C -0.354 4.354 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.875 5.875 16 Si 0.979 3.021 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.282 1.282 20 C 0.214 3.786 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.150 4.150 24 C -0.117 4.117 25 C -0.119 4.119 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.117 0.883 35 H 0.269 0.731 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 -0.675 -8.231 8.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.060 4.060 4 C -0.147 4.147 5 C -0.115 4.115 6 C -0.159 4.159 7 C -0.099 4.099 8 C -0.128 4.128 9 C 0.298 3.702 10 O -0.487 6.487 11 N -0.130 5.130 12 C -0.481 4.481 13 H 0.117 0.883 14 C -0.197 4.197 15 N -0.510 5.510 16 Si 0.802 3.198 17 H -0.178 1.178 18 H -0.202 1.202 19 H -0.208 1.208 20 C 0.122 3.878 21 C -0.165 4.165 22 C -0.131 4.131 23 C -0.168 4.168 24 C -0.135 4.135 25 C -0.139 4.139 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.423 -0.953 -7.936 8.004 hybrid contribution 0.762 0.811 0.680 1.304 sum 0.338 -0.142 -7.256 7.265 Atomic orbital electron populations 1.21632 0.93950 1.01768 1.01713 1.20457 0.97254 0.92068 1.01626 1.20150 0.97117 0.96675 0.92092 1.21213 1.00882 0.95690 0.96926 1.21622 0.96751 0.94281 0.98805 1.21374 1.01689 1.01170 0.91696 1.21518 0.95274 0.93642 0.99488 1.19767 1.04513 0.96093 0.92472 1.18897 0.82834 0.82667 0.85814 1.90598 1.26806 1.47769 1.83479 1.41359 1.20207 1.38380 1.13039 1.19774 1.05855 1.25806 0.96646 0.88315 1.26182 1.00931 0.98174 0.94406 1.69990 1.42287 1.39055 0.99631 0.85072 0.77642 0.77827 0.79264 1.17761 1.20166 1.20760 1.17587 0.93600 0.89430 0.87188 1.20941 0.99300 0.97100 0.99167 1.21072 0.98395 0.99660 0.93954 1.21153 0.94917 0.99777 1.00931 1.21052 1.00104 0.96661 0.95730 1.20735 0.97912 0.99715 0.95575 0.92060 0.94064 0.91468 0.88907 0.94570 0.82800 0.82163 0.83587 0.86512 0.92023 0.88348 0.84251 0.83540 0.84924 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.65 71.98 0.69 -3.66 16 2 C -0.08 -2.64 5.33 29.85 0.16 -2.48 16 3 C -0.06 -2.14 5.16 -19.59 -0.10 -2.24 16 4 C -0.13 -3.55 9.69 22.23 0.22 -3.33 16 5 C -0.10 -2.41 10.04 22.33 0.22 -2.19 16 6 C -0.14 -4.22 10.03 22.23 0.22 -3.99 16 7 C -0.08 -3.17 7.75 22.54 0.17 -2.99 16 8 C -0.13 -5.44 5.13 -20.09 -0.10 -5.54 16 9 C 0.51 25.86 6.24 86.74 0.54 26.40 16 10 O -0.60 -32.57 12.92 -3.99 -0.05 -32.62 16 11 N -0.42 -21.97 2.70 -462.08 -1.25 -23.22 16 12 C -0.35 -18.12 6.79 84.07 0.57 -17.55 16 13 H 0.10 4.92 6.22 -2.91 -0.02 4.90 16 14 C 0.01 0.40 5.36 84.94 0.46 0.85 16 15 N -0.87 -46.48 10.93 21.67 0.24 -46.25 16 16 Si 0.98 39.60 29.56 68.60 2.03 41.63 16 17 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 20 C 0.21 11.14 2.84 38.24 0.11 11.25 16 21 C -0.14 -6.93 9.35 22.41 0.21 -6.72 16 22 C -0.11 -4.47 10.04 22.25 0.22 -4.25 16 23 C -0.15 -5.58 10.04 22.30 0.22 -5.36 16 24 C -0.12 -4.88 10.04 22.25 0.22 -4.66 16 25 C -0.12 -6.02 8.57 22.41 0.19 -5.83 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.65 6.29 -2.39 -0.02 1.64 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 2.50 8.08 -2.39 -0.02 2.48 16 30 H 0.04 1.50 6.72 -2.39 -0.02 1.48 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.12 5.06 6.70 -2.91 -0.02 5.04 16 35 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16 36 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.08 4.21 8.03 -2.91 -0.02 4.19 16 Total: -1.00 -65.72 332.53 6.24 -59.48 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 1.04 Total: 33.25 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.24 Total: -32.28 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -1.01 Total: -69.46 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.05 Total: -32.62 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -65.72 6.24 -59.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178189958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.283 kcal (2) G-P(sol) polarization free energy of solvation -65.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds