Wall clock time and date at job start Tue Mar 31 2020 08:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.35953 * 117.00044 * 180.02562 * 17 16 14 19 19 C 1.38659 * 120.06234 * 359.72385 * 18 17 16 20 20 C 1.38177 * 119.96657 * 179.79262 * 19 18 17 21 21 C 1.50705 * 119.95361 * 180.23199 * 20 19 18 22 22 C 1.38264 * 120.09755 * 0.48391 * 20 19 18 23 23 C 1.38251 * 120.12526 * 359.75032 * 22 20 19 24 24 C 1.38339 * 120.03015 * 0.02562 * 23 22 20 25 25 F 1.35103 * 120.04643 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08000 * 120.01426 * 0.02562 * 19 18 17 36 36 H 1.08992 * 109.47195 * 270.25625 * 21 20 19 37 37 H 1.09001 * 109.46770 * 30.25415 * 21 20 19 38 38 H 1.08993 * 109.47229 * 150.25078 * 21 20 19 39 39 H 1.08001 * 119.93796 * 179.72192 * 22 20 19 40 40 H 1.07999 * 119.98881 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7613 4.4852 -3.6694 19 6 -0.9910 4.6141 -4.8151 20 6 -1.5052 5.2596 -5.9234 21 6 -0.6696 5.3949 -7.1704 22 6 -2.7831 5.7862 -5.8884 23 6 -3.5528 5.6642 -4.7464 24 6 -3.0450 5.0149 -3.6354 25 9 -3.7966 4.8959 -2.5191 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 0.0089 4.2069 -4.8425 36 1 -0.0918 6.3178 -7.1221 37 1 0.0086 4.5451 -7.2471 38 1 -1.3214 5.4196 -8.0436 39 1 -3.1807 6.2941 -6.7546 40 1 -4.5506 6.0767 -4.7213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183812337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:54 Heat of formation + Delta-G solvation = -103.721471 kcal Electronic energy + Delta-G solvation = -23405.303880 eV Core-core repulsion = 19713.733862 eV Total energy + Delta-G solvation = -3691.570018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.80886 -40.42320 -39.16567 -37.66791 -35.23746 -32.70317 -32.53988 -31.64072 -30.53539 -28.71632 -27.12934 -26.49063 -23.15672 -22.36497 -21.86852 -20.70168 -19.62466 -18.36625 -17.94576 -17.17003 -16.99143 -16.55326 -16.02995 -15.53545 -15.33310 -14.76019 -14.51765 -14.40680 -13.98199 -13.83975 -13.51318 -13.44101 -12.90460 -12.60490 -12.56602 -12.41437 -12.27408 -12.00263 -11.84925 -11.67349 -11.40058 -11.08759 -10.83795 -10.73489 -10.46022 -9.89383 -9.81923 -9.30045 -9.19998 -9.10214 -8.33569 -8.29795 -8.18963 -6.66020 -4.25510 0.84338 1.00984 2.64889 3.05314 3.27621 3.39591 3.45083 3.60376 3.92932 4.12971 4.40354 4.41566 4.44941 4.72778 4.86293 4.91492 5.02676 5.05307 5.13707 5.17867 5.25636 5.33862 5.49266 5.72155 5.78989 5.92474 6.05060 6.07724 6.17305 6.25269 6.40114 6.65570 6.77485 6.91056 7.01109 7.07897 7.32189 7.34580 7.60006 8.19570 8.35224 8.63447 8.86114 9.39143 10.72109 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.003357 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.192970 B = 8337.607466 C = 8972.616035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.253 3.747 4 H 0.042 0.958 5 C -0.631 4.631 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.884 5.884 9 Si 1.028 2.972 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.697 5.697 14 C 0.502 3.498 15 O -0.524 6.524 16 C 0.038 3.962 17 O -0.278 6.278 18 C 0.107 3.893 19 C -0.188 4.188 20 C -0.057 4.057 21 C -0.115 4.115 22 C -0.135 4.135 23 C -0.112 4.112 24 C 0.064 3.936 25 F -0.130 7.130 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.272 0.728 32 H 0.393 0.607 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 8.778 -17.374 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.150 3.850 4 H 0.060 0.940 5 C -0.668 4.668 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.516 5.516 9 Si 0.855 3.145 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.285 3.715 15 O -0.400 6.400 16 C -0.041 4.041 17 O -0.190 6.190 18 C 0.060 3.940 19 C -0.207 4.207 20 C -0.057 4.057 21 C -0.172 4.172 22 C -0.153 4.153 23 C -0.131 4.131 24 C 0.044 3.956 25 F -0.108 7.108 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.151 0.849 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.216 8.399 -14.810 21.553 hybrid contribution 0.298 0.275 -2.028 2.068 sum -12.918 8.674 -16.838 22.927 Atomic orbital electron populations 1.21905 0.97335 0.99003 1.02018 1.22241 0.93702 0.99600 1.01512 1.19062 0.95861 0.88489 0.81599 0.94029 1.21958 0.89544 1.50350 1.04960 0.91866 1.25606 0.96577 0.91581 1.02081 1.70876 1.13857 1.36247 1.30581 0.84240 0.76083 0.77756 0.76435 1.20774 1.20591 1.19847 1.46148 1.13787 1.56181 1.18560 1.19803 0.83384 0.80047 0.88229 1.90731 1.50295 1.58413 1.40596 1.22701 0.83123 0.99267 0.99024 1.86268 1.30345 1.68723 1.33617 1.19119 0.92427 0.94740 0.87750 1.21085 1.01062 1.05807 0.92705 1.19768 0.94637 0.95990 0.95302 1.20819 0.99301 1.02845 0.94239 1.20779 0.94016 1.02436 0.98108 1.20993 1.01139 0.99329 0.91662 1.17003 0.88341 1.05061 0.85214 1.91530 1.75025 1.94429 1.49866 0.94964 0.92923 0.93381 0.93092 0.91707 0.91836 0.77366 0.89156 0.89282 0.84349 0.90681 0.91191 0.91136 0.84946 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.53 37.16 0.32 -2.67 16 2 C -0.13 -2.92 5.37 -26.73 -0.14 -3.06 16 3 C 0.25 5.93 1.84 -69.09 -0.13 5.80 16 4 H 0.04 1.08 6.12 -51.93 -0.32 0.76 16 5 C -0.63 -16.61 8.92 -34.44 -0.31 -16.91 16 6 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 7 C 0.05 1.38 5.15 -17.82 -0.09 1.29 16 8 N -0.88 -25.68 13.70 55.43 0.76 -24.92 16 9 Si 1.03 24.82 26.56 -169.99 -4.51 20.31 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.27 6.34 56.52 0.36 -5.91 16 13 N -0.70 -13.45 5.03 -54.93 -0.28 -13.73 16 14 C 0.50 9.47 6.51 -10.98 -0.07 9.40 16 15 O -0.52 -12.06 13.64 -14.35 -0.20 -12.25 16 16 C 0.04 0.52 5.22 36.01 0.19 0.71 16 17 O -0.28 -4.56 9.53 -39.50 -0.38 -4.94 16 18 C 0.11 1.45 6.69 -39.18 -0.26 1.19 16 19 C -0.19 -1.96 8.69 -39.45 -0.34 -2.30 16 20 C -0.06 -0.49 5.88 -104.63 -0.62 -1.11 16 21 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 22 C -0.14 -1.11 9.69 -39.57 -0.38 -1.49 16 23 C -0.11 -1.10 10.02 -39.54 -0.40 -1.50 16 24 C 0.06 0.85 7.31 -39.30 -0.29 0.56 16 25 F -0.13 -2.02 17.11 2.25 0.04 -1.98 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.05 0.98 5.63 -51.93 -0.29 0.69 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.51 5.77 -51.93 -0.30 1.21 16 31 H 0.27 7.76 8.73 -40.82 -0.36 7.40 16 32 H 0.39 6.47 8.53 -40.82 -0.35 6.12 16 33 H 0.09 1.02 7.65 -51.93 -0.40 0.62 16 34 H 0.09 0.97 7.67 -51.93 -0.40 0.57 16 35 H 0.14 1.17 6.30 -52.49 -0.33 0.84 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -32.54 334.92 -7.04 -39.58 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.36 Total: 3.28 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.16 Total: -10.40 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.48 Total: -38.65 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.57 Total: -17.19 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.51 Total: 20.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.54 -7.04 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.140 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds