Wall clock time and date at job start Tue Mar 31 2020 08:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.35953 * 117.00044 * 180.02562 * 17 16 14 19 19 C 1.38659 * 120.06234 * 359.72385 * 18 17 16 20 20 C 1.38177 * 119.96657 * 179.79262 * 19 18 17 21 21 C 1.50705 * 119.95361 * 180.23199 * 20 19 18 22 22 C 1.38264 * 120.09755 * 0.48391 * 20 19 18 23 23 C 1.38251 * 120.12526 * 359.75032 * 22 20 19 24 24 C 1.38339 * 120.03015 * 0.02562 * 23 22 20 25 25 F 1.35103 * 120.04643 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08000 * 120.01426 * 0.02562 * 19 18 17 36 36 H 1.08992 * 109.47195 * 270.25625 * 21 20 19 37 37 H 1.09001 * 109.46770 * 30.25415 * 21 20 19 38 38 H 1.08993 * 109.47229 * 150.25078 * 21 20 19 39 39 H 1.08001 * 119.93796 * 179.72192 * 22 20 19 40 40 H 1.07999 * 119.98881 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7613 4.4852 -3.6694 19 6 -0.9910 4.6141 -4.8151 20 6 -1.5052 5.2596 -5.9234 21 6 -0.6696 5.3949 -7.1704 22 6 -2.7831 5.7862 -5.8884 23 6 -3.5528 5.6642 -4.7464 24 6 -3.0450 5.0149 -3.6354 25 9 -3.7966 4.8959 -2.5191 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 0.0089 4.2069 -4.8425 36 1 -0.0918 6.3178 -7.1221 37 1 0.0086 4.5451 -7.2471 38 1 -1.3214 5.4196 -8.0436 39 1 -3.1807 6.2941 -6.7546 40 1 -4.5506 6.0767 -4.7213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183812337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:53 Heat of formation + Delta-G solvation = -124.605314 kcal Electronic energy + Delta-G solvation = -23406.209471 eV Core-core repulsion = 19713.733862 eV Total energy + Delta-G solvation = -3692.475609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83514 -41.48564 -40.50718 -38.65752 -37.01384 -34.53812 -33.48552 -33.21526 -31.40106 -30.02383 -28.62423 -27.34169 -24.46253 -23.86783 -22.65933 -22.26086 -21.31583 -19.89950 -19.28162 -18.26310 -18.02709 -17.66904 -17.35723 -17.04143 -16.58806 -15.90217 -15.57469 -15.47605 -15.25472 -15.11475 -14.55054 -14.46453 -14.43067 -14.24259 -14.04560 -13.86989 -13.62136 -12.88209 -12.84943 -12.68548 -12.56791 -12.52256 -12.32291 -12.14963 -11.95160 -11.79802 -11.60932 -11.25612 -10.82756 -10.42426 -9.89615 -9.85473 -9.19263 -8.82713 -6.41873 0.07634 0.22753 1.45584 1.47564 1.53609 1.59665 1.69216 2.40528 2.52557 2.69441 2.91602 3.25079 3.57719 3.75858 3.85133 3.94252 4.03996 4.14646 4.24236 4.28133 4.36699 4.47080 4.51879 4.72455 4.82288 4.88985 4.90742 4.99975 5.05962 5.17343 5.18682 5.24924 5.29787 5.50109 5.51511 5.58866 5.65678 5.71010 6.02489 6.19146 6.53689 6.75596 7.23902 7.35814 8.54939 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.003357 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.192970 B = 8337.607466 C = 8972.616035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.256 3.744 4 H 0.018 0.982 5 C -0.626 4.626 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.914 5.914 9 Si 1.058 2.942 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.258 1.258 13 N -0.693 5.693 14 C 0.499 3.501 15 O -0.570 6.570 16 C 0.048 3.952 17 O -0.317 6.317 18 C 0.079 3.921 19 C -0.189 4.189 20 C -0.053 4.053 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.108 4.108 24 C 0.022 3.978 25 F -0.155 7.155 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.409 0.591 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 9.549 -20.277 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.151 3.849 4 H 0.036 0.964 5 C -0.663 4.663 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.547 5.547 9 Si 0.881 3.119 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.182 1.182 13 N -0.344 5.344 14 C 0.285 3.715 15 O -0.450 6.450 16 C -0.030 4.030 17 O -0.230 6.230 18 C 0.033 3.967 19 C -0.208 4.208 20 C -0.053 4.053 21 C -0.171 4.171 22 C -0.144 4.144 23 C -0.127 4.127 24 C 0.002 3.998 25 F -0.134 7.134 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.244 0.756 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.176 0.824 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.186 0.814 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.030 9.183 -17.764 24.428 hybrid contribution 0.539 0.127 -1.292 1.406 sum -13.492 9.310 -19.056 25.136 Atomic orbital electron populations 1.21779 0.95927 1.00327 1.01164 1.22128 0.94835 0.98384 1.01297 1.18750 0.93747 0.89473 0.82918 0.96400 1.22122 0.91110 1.48883 1.04179 0.93331 1.26537 0.96706 0.91357 1.04729 1.70956 1.14933 1.38607 1.30196 0.83826 0.75856 0.78198 0.74027 1.20478 1.20208 1.18237 1.45903 1.14726 1.56118 1.17689 1.20602 0.82265 0.79064 0.89550 1.90710 1.51510 1.59998 1.42750 1.22652 0.83267 1.00711 0.96391 1.86183 1.31247 1.69878 1.35725 1.19392 0.93068 0.96043 0.88159 1.21356 1.01573 1.05786 0.92049 1.20218 0.95044 0.94314 0.95721 1.20909 0.99419 1.03644 0.93147 1.21250 0.93601 1.01217 0.98357 1.21311 1.02223 0.98203 0.90943 1.17587 0.88895 1.07514 0.85774 1.91452 1.75670 1.94898 1.51383 0.92437 0.94633 0.93435 0.92195 0.93012 0.92664 0.75591 0.86180 0.85778 0.82433 0.89622 0.90513 0.89377 0.81434 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.53 71.98 0.61 -4.81 16 2 C -0.13 -5.57 5.37 30.60 0.16 -5.40 16 3 C 0.26 11.96 1.84 44.25 0.08 12.04 16 4 H 0.02 0.94 6.12 -2.39 -0.01 0.93 16 5 C -0.63 -33.08 8.92 25.60 0.23 -32.86 16 6 H 0.05 2.66 7.96 -2.91 -0.02 2.64 16 7 C 0.01 0.57 5.15 84.66 0.44 1.01 16 8 N -0.91 -53.73 13.70 21.45 0.29 -53.43 16 9 Si 1.06 50.40 26.56 68.60 1.82 52.23 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.56 6.34 99.48 0.63 -10.93 16 13 N -0.69 -26.20 5.03 -446.10 -2.24 -28.44 16 14 C 0.50 18.54 6.51 87.66 0.57 19.11 16 15 O -0.57 -26.61 13.64 16.00 0.22 -26.40 16 16 C 0.05 1.24 5.22 71.24 0.37 1.61 16 17 O -0.32 -10.37 9.53 -73.99 -0.71 -11.08 16 18 C 0.08 2.10 6.69 22.53 0.15 2.25 16 19 C -0.19 -3.45 8.69 22.36 0.19 -3.25 16 20 C -0.05 -0.72 5.88 -19.87 -0.12 -0.84 16 21 C -0.11 -0.81 10.01 71.24 0.71 -0.10 16 22 C -0.13 -1.62 9.69 22.28 0.22 -1.41 16 23 C -0.11 -1.92 10.02 22.30 0.22 -1.70 16 24 C 0.02 0.58 7.31 22.45 0.16 0.75 16 25 F -0.16 -5.06 17.11 44.97 0.77 -4.29 16 26 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.03 1.53 7.89 -2.39 -0.02 1.51 16 28 H 0.05 1.90 5.63 -2.39 -0.01 1.89 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 2.38 5.77 -2.39 -0.01 2.36 16 31 H 0.26 15.39 8.73 -92.71 -0.81 14.58 16 32 H 0.41 12.83 8.53 -92.71 -0.79 12.04 16 33 H 0.12 2.39 7.65 -2.39 -0.02 2.37 16 34 H 0.12 2.33 7.67 -2.39 -0.02 2.32 16 35 H 0.16 2.11 6.30 -2.91 -0.02 2.09 16 36 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 38 H 0.09 0.36 8.08 -2.39 -0.02 0.34 16 39 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -73.45 334.92 4.33 -69.13 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.16 Total: 15.88 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.01 Total: -13.59 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.95 Total: -81.88 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.49 Total: -37.47 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.29 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 1.82 Total: 52.23 kcal Total: -73.45 4.33 -69.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.480 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds