Wall clock time and date at job start Tue Mar 31 2020 08:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.35947 * 117.00282 * 180.02562 * 17 16 14 19 19 C 1.38663 * 120.05969 * 359.72536 * 18 17 16 20 20 C 1.38184 * 119.96530 * 179.79141 * 19 18 17 21 21 C 1.50709 * 119.94959 * 180.22963 * 20 19 18 22 22 C 1.38260 * 120.10086 * 0.48657 * 20 19 18 23 23 C 1.38258 * 120.11902 * 359.74292 * 22 20 19 24 24 C 1.38329 * 120.03390 * 0.02562 * 23 22 20 25 25 F 1.35102 * 120.04749 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.07996 * 120.02037 * 0.02562 * 19 18 17 36 36 H 1.08994 * 109.47006 * 270.25034 * 21 20 19 37 37 H 1.08997 * 109.47146 * 30.25523 * 21 20 19 38 38 H 1.09005 * 109.46589 * 150.25413 * 21 20 19 39 39 H 1.08000 * 119.94288 * 179.72403 * 22 20 19 40 40 H 1.08005 * 119.98022 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.8043 4.5001 3.6115 19 6 -1.0520 4.6236 4.7697 20 6 -1.5759 5.2814 5.8662 21 6 -0.7559 5.4200 7.1231 22 6 -2.8532 5.8081 5.8138 23 6 -3.6085 5.6831 4.6625 24 6 -3.0874 5.0297 3.5602 25 9 -3.8254 4.9069 2.4352 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -0.0557 4.2092 4.8136 36 1 -0.9393 4.5642 7.7726 37 1 0.3021 5.4596 6.8641 38 1 -1.0377 6.3365 7.6414 39 1 -3.2618 6.3179 6.6737 40 1 -4.6058 6.0957 4.6239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183812351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:56 Heat of formation + Delta-G solvation = -103.226765 kcal Electronic energy + Delta-G solvation = -23331.655212 eV Core-core repulsion = 19640.106646 eV Total energy + Delta-G solvation = -3691.548566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.75272 -40.34407 -39.00733 -37.57284 -35.05028 -32.64984 -32.45952 -31.17116 -30.44490 -28.58729 -26.98868 -26.38294 -23.32837 -22.71195 -21.81249 -20.45549 -19.42782 -18.27637 -17.52858 -17.05614 -16.62393 -16.45929 -15.57111 -15.39468 -15.28142 -14.72255 -14.47709 -14.34255 -14.17936 -13.84232 -13.55742 -13.38539 -12.74199 -12.71578 -12.34780 -12.23320 -11.82962 -11.79334 -11.51974 -11.35155 -11.29120 -11.01597 -10.99076 -10.85895 -10.34154 -10.22616 -9.65819 -9.11860 -9.05160 -9.04903 -8.54484 -8.27607 -7.91710 -6.16204 -4.26197 0.89229 1.06250 2.74700 3.20698 3.22123 3.29384 3.31493 3.32887 4.01858 4.19129 4.33159 4.47862 4.49347 4.78582 4.91340 4.98475 5.13304 5.16363 5.20266 5.28034 5.28742 5.42883 5.52896 5.77504 5.83514 5.97241 6.21839 6.37622 6.43651 6.45876 6.63664 7.00581 7.12031 7.20355 7.31619 7.37287 7.57818 7.67881 7.85068 8.13439 8.55053 8.72148 9.01848 9.41018 10.89170 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.003207 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.643719 B = 8729.291861 C = 9479.418511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.522 6.522 16 C 0.037 3.963 17 O -0.277 6.277 18 C 0.108 3.892 19 C -0.188 4.188 20 C -0.057 4.057 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.113 4.113 24 C 0.063 3.937 25 F -0.130 7.130 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 8.852 18.494 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.398 6.398 16 C -0.042 4.042 17 O -0.189 6.189 18 C 0.060 3.940 19 C -0.207 4.207 20 C -0.057 4.057 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.132 4.132 24 C 0.044 3.956 25 F -0.108 7.108 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.150 0.850 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.684 8.670 17.354 21.254 hybrid contribution 1.331 -0.100 0.191 1.348 sum -7.353 8.571 17.545 20.864 Atomic orbital electron populations 1.21852 0.98267 0.98188 1.01288 1.21950 0.92642 0.99681 1.02397 1.18850 0.94330 0.89191 0.80563 0.93130 1.21242 0.90521 1.39199 1.06418 0.91955 1.24894 0.98693 0.94756 0.95352 1.69903 1.35106 1.37478 1.09300 0.86385 0.84723 0.77792 0.78140 1.19742 1.20855 1.20854 1.46387 1.13891 1.56133 1.18948 1.19725 0.83502 0.80213 0.88107 1.90740 1.50955 1.58389 1.39746 1.22746 0.82961 0.99157 0.99330 1.86278 1.30437 1.68415 1.33758 1.19134 0.92364 0.94598 0.87864 1.21087 1.01413 1.05569 0.92622 1.19762 0.94627 0.96000 0.95357 1.20817 0.99384 1.02620 0.94348 1.20768 0.94051 1.02728 0.97885 1.20987 1.01095 0.99320 0.91752 1.17005 0.88556 1.05053 0.85032 1.91531 1.75764 1.94395 1.49150 0.95708 0.94396 0.93058 0.88151 0.94945 0.92530 0.77863 0.89411 0.89314 0.84338 0.90734 0.91190 0.91173 0.84998 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.82 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.70 -13.96 5.02 -54.93 -0.28 -14.23 16 14 C 0.50 9.88 6.48 -10.99 -0.07 9.81 16 15 O -0.52 -12.68 13.64 -14.35 -0.20 -12.88 16 16 C 0.04 0.53 5.22 36.01 0.19 0.72 16 17 O -0.28 -4.72 9.53 -39.48 -0.38 -5.10 16 18 C 0.11 1.51 6.69 -39.18 -0.26 1.25 16 19 C -0.19 -2.02 8.69 -39.44 -0.34 -2.36 16 20 C -0.06 -0.51 5.88 -104.63 -0.62 -1.12 16 21 C -0.12 -0.69 10.01 36.01 0.36 -0.33 16 22 C -0.14 -1.16 9.69 -39.57 -0.38 -1.54 16 23 C -0.11 -1.14 10.02 -39.54 -0.40 -1.54 16 24 C 0.06 0.87 7.31 -39.30 -0.29 0.58 16 25 F -0.13 -2.08 17.11 2.25 0.04 -2.04 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 28 H 0.05 1.24 7.85 -51.93 -0.41 0.84 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.39 6.40 8.54 -40.82 -0.35 6.05 16 33 H 0.09 1.01 7.65 -51.93 -0.40 0.61 16 34 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 35 H 0.14 1.21 6.30 -52.49 -0.33 0.88 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 38 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -32.00 337.62 -7.68 -39.68 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.37 Total: 4.47 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.19 Total: -6.43 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.35 Total: -38.00 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.57 Total: -17.97 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.00 -7.68 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.547 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds