Wall clock time and date at job start Tue Mar 31 2020 08:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.35947 * 117.00282 * 180.02562 * 17 16 14 19 19 C 1.38663 * 120.05969 * 359.72536 * 18 17 16 20 20 C 1.38184 * 119.96530 * 179.79141 * 19 18 17 21 21 C 1.50709 * 119.94959 * 180.22963 * 20 19 18 22 22 C 1.38260 * 120.10086 * 0.48657 * 20 19 18 23 23 C 1.38258 * 120.11902 * 359.74292 * 22 20 19 24 24 C 1.38329 * 120.03390 * 0.02562 * 23 22 20 25 25 F 1.35102 * 120.04749 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.07996 * 120.02037 * 0.02562 * 19 18 17 36 36 H 1.08994 * 109.47006 * 270.25034 * 21 20 19 37 37 H 1.08997 * 109.47146 * 30.25523 * 21 20 19 38 38 H 1.09005 * 109.46589 * 150.25413 * 21 20 19 39 39 H 1.08000 * 119.94288 * 179.72403 * 22 20 19 40 40 H 1.08005 * 119.98022 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.8043 4.5001 3.6115 19 6 -1.0520 4.6236 4.7697 20 6 -1.5759 5.2814 5.8662 21 6 -0.7559 5.4200 7.1231 22 6 -2.8532 5.8081 5.8138 23 6 -3.6085 5.6831 4.6625 24 6 -3.0874 5.0297 3.5602 25 9 -3.8254 4.9069 2.4352 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -0.0557 4.2092 4.8136 36 1 -0.9393 4.5642 7.7726 37 1 0.3021 5.4596 6.8641 38 1 -1.0377 6.3365 7.6414 39 1 -3.2618 6.3179 6.6737 40 1 -4.6058 6.0957 4.6239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183812351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:55 Heat of formation + Delta-G solvation = -123.195622 kcal Electronic energy + Delta-G solvation = -23332.521127 eV Core-core repulsion = 19640.106646 eV Total energy + Delta-G solvation = -3692.414480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.82196 -41.43287 -40.42255 -38.61613 -36.90201 -34.36873 -33.35716 -32.95656 -31.36621 -29.94355 -28.49675 -27.31801 -25.05216 -23.84503 -22.63243 -22.12450 -21.20949 -19.34175 -19.02415 -18.07399 -17.84864 -17.60985 -17.13575 -17.09434 -16.56445 -16.11702 -15.70760 -15.46150 -15.23193 -15.01818 -14.61193 -14.41040 -14.24570 -13.94514 -13.82330 -13.53368 -13.19453 -12.90370 -12.84070 -12.81467 -12.70279 -12.52641 -12.16805 -12.13592 -12.06437 -11.91745 -11.60928 -11.06410 -10.74747 -10.53843 -9.83440 -9.71448 -9.17023 -8.16568 -6.34368 0.09628 0.24952 1.45129 1.45785 1.56995 1.62479 1.68945 2.40224 2.54646 2.79825 3.13422 3.27658 3.64283 3.78127 3.90342 3.99578 4.09331 4.17050 4.26355 4.46087 4.50179 4.53607 4.72662 4.75509 4.91527 4.93107 5.02349 5.03102 5.20596 5.22640 5.32073 5.40403 5.51653 5.52334 5.59078 5.69920 5.77146 5.89465 6.14477 6.23303 6.73519 6.90172 7.32054 7.50906 8.89222 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.003207 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.643719 B = 8729.291861 C = 9479.418511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.077 0.923 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.257 1.257 11 H -0.280 1.280 12 H -0.287 1.287 13 N -0.695 5.695 14 C 0.496 3.504 15 O -0.577 6.577 16 C 0.049 3.951 17 O -0.320 6.320 18 C 0.079 3.921 19 C -0.188 4.188 20 C -0.052 4.052 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.109 4.109 24 C 0.020 3.980 25 F -0.156 7.156 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.409 0.591 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 9.774 22.553 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.095 0.905 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.213 1.213 13 N -0.347 5.347 14 C 0.281 3.719 15 O -0.457 6.457 16 C -0.029 4.029 17 O -0.233 6.233 18 C 0.033 3.967 19 C -0.207 4.207 20 C -0.052 4.052 21 C -0.171 4.171 22 C -0.145 4.145 23 C -0.127 4.127 24 C 0.000 4.000 25 F -0.135 7.135 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.245 0.755 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.178 0.822 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.186 0.814 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.364 9.610 21.480 24.657 hybrid contribution 0.853 -0.313 -0.978 1.335 sum -6.510 9.297 20.502 23.434 Atomic orbital electron populations 1.21694 0.97350 0.99150 1.00036 1.21796 0.93335 0.99175 1.01642 1.18416 0.93903 0.89120 0.81042 0.98630 1.21603 0.91072 1.38892 1.06835 0.90461 1.25810 1.03442 0.94388 0.95030 1.70066 1.37108 1.38408 1.09903 0.85288 0.78946 0.77782 0.78251 1.18062 1.20540 1.21298 1.46065 1.14738 1.55807 1.18040 1.20653 0.82468 0.79269 0.89474 1.90720 1.52442 1.60273 1.42271 1.22679 0.83140 1.00691 0.96380 1.86193 1.31419 1.69656 1.36029 1.19423 0.93010 0.95945 0.88331 1.21371 1.01977 1.05495 0.91835 1.20230 0.94970 0.94205 0.95840 1.20911 0.99253 1.04007 0.92890 1.21251 0.93677 1.01481 0.98054 1.21305 1.02149 0.98186 0.91074 1.17618 0.89185 1.07621 0.85565 1.91449 1.76433 1.94888 1.50774 0.93448 0.93991 0.95970 0.90922 0.93438 0.92625 0.75486 0.85738 0.85952 0.82247 0.89508 0.90444 0.89437 0.81404 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.52 71.98 0.61 -5.20 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 14.12 2.24 44.24 0.10 14.22 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 5 C -0.55 -28.13 8.73 25.60 0.22 -27.91 16 6 H 0.08 3.66 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.71 5.29 84.65 0.45 1.15 16 8 N -0.92 -52.33 11.29 21.45 0.24 -52.08 16 9 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 10 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.70 -27.44 5.02 -446.10 -2.24 -29.68 16 14 C 0.50 19.72 6.48 87.66 0.57 20.29 16 15 O -0.58 -29.50 13.64 16.01 0.22 -29.28 16 16 C 0.05 1.34 5.22 71.24 0.37 1.72 16 17 O -0.32 -11.04 9.53 -73.92 -0.70 -11.75 16 18 C 0.08 2.18 6.69 22.53 0.15 2.34 16 19 C -0.19 -3.54 8.69 22.36 0.19 -3.34 16 20 C -0.05 -0.73 5.88 -19.87 -0.12 -0.85 16 21 C -0.11 -0.81 10.01 71.24 0.71 -0.10 16 22 C -0.13 -1.70 9.69 22.28 0.22 -1.48 16 23 C -0.11 -2.03 10.02 22.30 0.22 -1.80 16 24 C 0.02 0.55 7.31 22.45 0.16 0.71 16 25 F -0.16 -5.36 17.11 44.97 0.77 -4.59 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.89 5.64 -2.39 -0.01 1.87 16 28 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 29 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.41 12.70 8.54 -92.70 -0.79 11.91 16 33 H 0.13 2.48 7.65 -2.39 -0.02 2.46 16 34 H 0.12 2.51 7.67 -2.39 -0.02 2.49 16 35 H 0.16 2.17 6.30 -2.91 -0.02 2.15 16 36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 38 H 0.09 0.37 8.08 -2.38 -0.02 0.35 16 39 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -75.34 337.62 4.62 -70.72 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.27 Total: 19.34 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.03 Total: -6.02 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.00 Total: -81.77 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.49 Total: -41.03 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.77 Total: -4.59 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -75.34 4.62 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183812351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.473 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds