Wall clock time and date at job start Tue Mar 31 2020 08:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21284 * 120.00486 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99999 * 180.02562 * 14 13 3 17 17 C 1.50699 * 109.47217 * 180.02562 * 16 14 13 18 18 C 1.38267 * 119.93502 * 269.72592 * 17 16 14 19 19 C 1.38175 * 120.09661 * 179.72702 * 18 17 16 20 20 C 1.38667 * 119.96821 * 0.53989 * 19 18 17 21 21 O 1.35951 * 120.06290 * 179.70551 * 20 19 18 22 22 C 1.42902 * 117.00241 * 0.02633 * 21 20 19 23 23 C 1.38907 * 119.87256 * 359.73197 * 20 19 18 24 24 F 1.35100 * 120.04473 * 180.02562 * 23 20 19 25 25 C 1.38253 * 119.94168 * 89.99318 * 17 16 14 26 26 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 28 28 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 29 29 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 30 30 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 33 33 H 1.09004 * 109.46471 * 299.99552 * 16 14 13 34 34 H 1.08997 * 109.47274 * 59.99659 * 16 14 13 35 35 H 1.08007 * 119.95013 * 359.97400 * 18 17 16 36 36 H 1.08002 * 120.01708 * 180.27532 * 19 18 17 37 37 H 1.08999 * 109.47084 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47124 * 299.99777 * 22 21 20 39 39 H 1.08995 * 109.47061 * 59.99463 * 22 21 20 40 40 H 1.08001 * 119.98138 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3111 2.1545 12 1 6.6132 0.8394 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0363 3.3376 -2.6549 17 6 -1.3611 3.8862 -2.5231 18 6 -2.4456 3.1029 -2.8722 19 6 -3.7286 3.6005 -2.7474 20 6 -3.9286 4.8914 -2.2820 21 8 -5.1898 5.3850 -2.1641 22 6 -6.2632 4.5186 -2.5371 23 6 -2.8379 5.6792 -1.9370 24 9 -3.0287 6.9371 -1.4827 25 6 -1.5560 5.1738 -2.0587 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0618 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 0.7277 4.1530 -2.8679 34 1 0.0674 2.6130 -3.4685 35 1 -2.2899 2.0991 -3.2392 36 1 -4.5750 2.9859 -3.0162 37 1 -7.2128 5.0345 -2.3948 38 1 -6.1557 4.2371 -3.5847 39 1 -6.2399 3.6231 -1.9161 40 1 -0.7070 5.7850 -1.7904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183847589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:54 Heat of formation + Delta-G solvation = -103.836110 kcal Electronic energy + Delta-G solvation = -23515.054863 eV Core-core repulsion = 19823.479874 eV Total energy + Delta-G solvation = -3691.574989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.71857 -40.18410 -39.09390 -37.51057 -35.02495 -32.48664 -32.04436 -30.79797 -30.74099 -28.33520 -27.18683 -26.09654 -23.08401 -22.81507 -21.82377 -20.18766 -19.30160 -18.39327 -17.17466 -16.97750 -16.72387 -16.21095 -15.70290 -15.27888 -15.06441 -14.89174 -14.70955 -14.39206 -14.28022 -13.93624 -13.16748 -13.01551 -12.70150 -12.46304 -12.27350 -12.22323 -11.69305 -11.59095 -11.32506 -11.26131 -11.14981 -11.10865 -10.96024 -10.83998 -10.32277 -10.17214 -9.63028 -9.08908 -9.01797 -8.89186 -8.49933 -8.10856 -7.81127 -6.12807 -4.22286 1.14271 1.21070 3.01061 3.23849 3.30717 3.32032 3.41716 3.48377 4.16800 4.23121 4.42228 4.60423 4.68058 4.84385 4.92528 5.07439 5.18496 5.21962 5.23100 5.43014 5.46663 5.60686 5.65697 5.87817 6.05053 6.11158 6.38199 6.44910 6.49721 6.59021 6.65817 7.02857 7.17756 7.20125 7.36870 7.46533 7.61824 7.73505 7.90449 8.18196 8.67888 8.78023 9.15700 9.45433 10.92432 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.003225 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.222987 B = 8680.491378 C = 9052.598363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.500 3.500 15 O -0.541 6.541 16 C -0.106 4.106 17 C -0.059 4.059 18 C -0.075 4.075 19 C -0.179 4.179 20 C 0.087 3.913 21 O -0.313 6.313 22 C 0.027 3.973 23 C 0.070 3.930 24 F -0.135 7.135 25 C -0.101 4.101 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 5.492 -12.986 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.419 6.419 16 C -0.146 4.146 17 C -0.060 4.060 18 C -0.093 4.093 19 C -0.198 4.198 20 C 0.042 3.958 21 O -0.227 6.227 22 C -0.068 4.068 23 C 0.050 3.950 24 F -0.114 7.114 25 C -0.120 4.120 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.505 5.588 -12.016 18.920 hybrid contribution 1.181 -0.127 -0.176 1.200 sum -12.324 5.461 -12.192 18.175 Atomic orbital electron populations 1.21830 0.98369 0.97917 1.01238 1.21929 0.92576 0.99883 1.02222 1.18762 0.94114 0.89136 0.81091 0.93385 1.21239 0.90786 1.38884 1.06367 0.92108 1.24893 0.98570 0.94843 0.95402 1.69895 1.35118 1.37596 1.09326 0.86467 0.84914 0.77647 0.78175 1.20587 1.21091 1.19860 1.46496 1.14613 1.56147 1.18546 1.20200 0.82882 0.79624 0.88847 1.90703 1.51322 1.59455 1.40393 1.20735 0.93887 1.01630 0.98319 1.19089 0.94820 0.92888 0.99207 1.20844 0.91100 0.99350 0.98036 1.21037 0.98723 0.94304 1.05750 1.18943 0.84143 0.93073 0.99684 1.86112 1.12163 1.41890 1.82507 1.23083 0.88552 0.95100 1.00045 1.16865 0.91922 0.80795 1.05423 1.91481 1.95912 1.37058 1.86960 1.20846 0.94868 0.96521 0.99790 0.95975 0.93209 0.94266 0.95083 0.88362 0.92574 0.77992 0.88281 0.88276 0.85156 0.84659 0.88170 0.92565 0.92399 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.52 37.16 0.32 -2.67 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.71 -13.89 5.02 -54.93 -0.28 -14.16 16 14 C 0.50 9.20 6.39 -10.99 -0.07 9.13 16 15 O -0.54 -12.13 13.17 5.55 0.07 -12.05 16 16 C -0.11 -1.36 5.83 -29.03 -0.17 -1.53 16 17 C -0.06 -0.81 4.37 -104.61 -0.46 -1.26 16 18 C -0.08 -0.93 9.69 -39.59 -0.38 -1.32 16 19 C -0.18 -2.12 9.04 -39.45 -0.36 -2.47 16 20 C 0.09 1.19 6.69 -39.18 -0.26 0.93 16 21 O -0.31 -3.98 10.36 -19.59 -0.20 -4.19 16 22 C 0.03 0.21 9.81 101.05 0.99 1.20 16 23 C 0.07 1.04 7.31 -39.30 -0.29 0.75 16 24 F -0.14 -2.12 17.11 2.25 0.04 -2.08 16 25 C -0.10 -1.43 9.67 -39.54 -0.38 -1.81 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.04 0.82 5.65 -51.93 -0.29 0.52 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 6.47 8.54 -40.82 -0.35 6.12 16 33 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 39 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 40 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -31.70 336.80 -6.82 -38.51 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.37 Total: 5.65 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.76 Total: -8.22 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.35 Total: -38.08 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.13 Total: -16.24 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.70 -6.82 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183847589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.322 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds