Wall clock time and date at job start Tue Mar 31 2020 08:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21284 * 120.00486 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99999 * 180.02562 * 14 13 3 17 17 C 1.50699 * 109.47217 * 180.02562 * 16 14 13 18 18 C 1.38267 * 119.93502 * 269.72592 * 17 16 14 19 19 C 1.38175 * 120.09661 * 179.72702 * 18 17 16 20 20 C 1.38667 * 119.96821 * 0.53989 * 19 18 17 21 21 O 1.35951 * 120.06290 * 179.70551 * 20 19 18 22 22 C 1.42902 * 117.00241 * 0.02633 * 21 20 19 23 23 C 1.38907 * 119.87256 * 359.73197 * 20 19 18 24 24 F 1.35100 * 120.04473 * 180.02562 * 23 20 19 25 25 C 1.38253 * 119.94168 * 89.99318 * 17 16 14 26 26 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 28 28 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 29 29 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 30 30 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 33 33 H 1.09004 * 109.46471 * 299.99552 * 16 14 13 34 34 H 1.08997 * 109.47274 * 59.99659 * 16 14 13 35 35 H 1.08007 * 119.95013 * 359.97400 * 18 17 16 36 36 H 1.08002 * 120.01708 * 180.27532 * 19 18 17 37 37 H 1.08999 * 109.47084 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47124 * 299.99777 * 22 21 20 39 39 H 1.08995 * 109.47061 * 59.99463 * 22 21 20 40 40 H 1.08001 * 119.98138 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3111 2.1545 12 1 6.6132 0.8394 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0363 3.3376 -2.6549 17 6 -1.3611 3.8862 -2.5231 18 6 -2.4456 3.1029 -2.8722 19 6 -3.7286 3.6005 -2.7474 20 6 -3.9286 4.8914 -2.2820 21 8 -5.1898 5.3850 -2.1641 22 6 -6.2632 4.5186 -2.5371 23 6 -2.8379 5.6792 -1.9370 24 9 -3.0287 6.9371 -1.4827 25 6 -1.5560 5.1738 -2.0587 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0618 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 0.7277 4.1530 -2.8679 34 1 0.0674 2.6130 -3.4685 35 1 -2.2899 2.0991 -3.2392 36 1 -4.5750 2.9859 -3.0162 37 1 -7.2128 5.0345 -2.3948 38 1 -6.1557 4.2371 -3.5847 39 1 -6.2399 3.6231 -1.9161 40 1 -0.7070 5.7850 -1.7904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183847589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:53 Heat of formation + Delta-G solvation = -124.109342 kcal Electronic energy + Delta-G solvation = -23515.933977 eV Core-core repulsion = 19823.479874 eV Total energy + Delta-G solvation = -3692.454102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.84623 -41.21216 -40.46137 -38.56872 -36.80562 -34.25220 -33.39213 -32.40324 -31.71862 -29.44967 -28.63395 -27.26068 -24.94114 -23.78880 -23.01988 -21.77372 -20.97544 -19.34179 -18.83215 -17.97995 -17.82793 -17.38787 -17.12753 -17.04278 -16.23984 -16.05362 -15.98901 -15.78351 -15.23527 -15.12198 -14.65422 -14.49844 -14.25910 -13.79087 -13.46588 -13.24536 -13.11774 -13.09437 -12.87416 -12.69779 -12.55096 -12.50300 -12.13894 -12.08070 -12.01034 -11.93982 -11.53378 -11.01436 -10.61312 -10.45670 -9.91622 -9.53548 -9.11880 -8.13707 -6.30683 0.14406 0.20773 1.45728 1.46258 1.56505 1.98574 2.19699 2.35721 2.47402 2.94113 3.15978 3.21888 3.63933 3.75670 4.02013 4.24683 4.28475 4.38159 4.38914 4.51023 4.51410 4.54317 4.62461 4.70068 4.74423 4.81311 4.91745 5.06963 5.11856 5.15369 5.31286 5.48513 5.50969 5.60536 5.64916 5.70828 5.85321 5.99505 6.22108 6.29398 6.79234 7.10738 7.37498 7.71778 8.91303 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.003225 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.222987 B = 8680.491378 C = 9052.598363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.707 5.707 14 C 0.497 3.503 15 O -0.585 6.585 16 C -0.090 4.090 17 C -0.075 4.075 18 C -0.075 4.075 19 C -0.176 4.176 20 C 0.082 3.918 21 O -0.336 6.336 22 C 0.016 3.984 23 C 0.036 3.964 24 F -0.149 7.149 25 C -0.111 4.111 26 H 0.043 0.957 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.263 0.737 32 H 0.405 0.595 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 4.788 -15.497 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.357 5.357 14 C 0.284 3.716 15 O -0.466 6.466 16 C -0.130 4.130 17 C -0.076 4.076 18 C -0.093 4.093 19 C -0.195 4.195 20 C 0.036 3.964 21 O -0.250 6.250 22 C -0.078 4.078 23 C 0.016 3.984 24 F -0.128 7.128 25 C -0.130 4.130 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.240 0.760 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.479 4.898 -14.580 20.451 hybrid contribution 1.049 0.111 0.611 1.219 sum -12.429 5.009 -13.969 19.357 Atomic orbital electron populations 1.21662 0.96891 0.98976 1.00347 1.21770 0.93809 0.99210 1.01189 1.18296 0.93358 0.89158 0.81683 0.98865 1.21625 0.91686 1.38452 1.06648 0.90920 1.25770 1.03133 0.94564 0.95156 1.70058 1.36978 1.38548 1.09881 0.85413 0.79422 0.77262 0.78641 1.20677 1.21155 1.18256 1.46250 1.15772 1.56248 1.17415 1.21150 0.81617 0.78552 0.90274 1.90694 1.52450 1.60847 1.42590 1.20704 0.93876 1.02734 0.95642 1.19257 0.95646 0.92800 0.99916 1.21219 0.90952 1.00113 0.97007 1.21387 0.99725 0.93734 1.04613 1.19145 0.84381 0.93584 0.99305 1.86090 1.12600 1.43641 1.82677 1.23436 0.87825 0.95182 1.01317 1.17229 0.93048 0.80867 1.07217 1.91432 1.96041 1.37949 1.87370 1.21000 0.94829 0.97224 0.99931 0.93798 0.96118 0.93057 0.93837 0.91468 0.92754 0.75997 0.85749 0.84524 0.82781 0.81548 0.86188 0.90654 0.91681 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.52 71.98 0.61 -4.68 16 2 C -0.12 -5.79 5.45 30.59 0.17 -5.63 16 3 C 0.28 13.87 2.24 44.24 0.10 13.97 16 4 H -0.01 -0.40 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -28.23 8.73 25.60 0.22 -28.01 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.30 11.29 21.45 0.24 -52.06 16 9 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 N -0.71 -26.89 5.02 -446.10 -2.24 -29.13 16 14 C 0.50 17.66 6.39 87.66 0.56 18.22 16 15 O -0.58 -26.40 13.17 -3.04 -0.04 -26.45 16 16 C -0.09 -2.05 5.83 29.10 0.17 -1.88 16 17 C -0.08 -1.91 4.37 -19.85 -0.09 -2.00 16 18 C -0.07 -1.66 9.69 22.26 0.22 -1.44 16 19 C -0.18 -3.75 9.04 22.36 0.20 -3.54 16 20 C 0.08 2.17 6.69 22.53 0.15 2.32 16 21 O -0.34 -8.26 10.36 -93.00 -0.96 -9.22 16 22 C 0.02 0.22 9.81 113.37 1.11 1.33 16 23 C 0.04 1.08 7.31 22.45 0.16 1.25 16 24 F -0.15 -4.84 17.11 44.97 0.77 -4.07 16 25 C -0.11 -3.10 9.67 22.30 0.22 -2.89 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 28 H 0.05 2.08 5.65 -2.39 -0.01 2.07 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.07 3.67 5.95 -2.38 -0.01 3.65 16 31 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.41 12.57 8.54 -92.71 -0.79 11.78 16 33 H 0.12 2.24 8.08 -2.39 -0.02 2.22 16 34 H 0.14 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.17 2.36 6.30 -2.91 -0.02 2.34 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 39 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 40 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -71.84 336.80 4.32 -67.52 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.27 Total: 21.52 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.25 Total: -11.80 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.00 Total: -81.19 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.00 Total: -35.67 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.77 Total: -4.07 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -71.84 4.32 -67.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183847589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.590 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds