Wall clock time and date at job start Tue Mar 31 2020 08:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.07998 * 120.00299 * 244.73777 * 5 3 2 7 7 C 1.37881 * 119.99818 * 64.73751 * 5 3 2 8 8 N 1.31514 * 119.99809 * 187.26380 * 7 5 3 9 9 Si 1.86797 * 120.00131 * 7.25952 * 7 5 3 10 10 H 1.48495 * 109.46960 * 269.99957 * 9 7 5 11 11 H 1.48501 * 109.47104 * 29.99939 * 9 7 5 12 12 H 1.48497 * 109.46898 * 149.99978 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34783 * 120.00142 * 275.00088 * 13 3 2 15 15 O 1.21283 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50695 * 119.99970 * 179.97438 * 14 13 3 17 17 C 1.50697 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.38262 * 119.93801 * 269.73288 * 17 16 14 19 19 C 1.38178 * 120.09988 * 179.72559 * 18 17 16 20 20 C 1.38665 * 119.96603 * 0.54307 * 19 18 17 21 21 O 1.35958 * 120.06552 * 179.70670 * 20 19 18 22 22 C 1.42901 * 116.99583 * 0.02562 * 21 20 19 23 23 C 1.38908 * 119.87307 * 359.72535 * 20 19 18 24 24 F 1.35101 * 120.04634 * 180.02562 * 23 20 19 25 25 C 1.38258 * 119.93827 * 89.99913 * 17 16 14 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.97003 * 119.99883 * 354.93902 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09001 * 109.47150 * 300.00196 * 16 14 13 34 34 H 1.08996 * 109.47068 * 60.00143 * 16 14 13 35 35 H 1.08005 * 119.95233 * 359.97114 * 18 17 16 36 36 H 1.08000 * 120.01918 * 180.27085 * 19 18 17 37 37 H 1.08996 * 109.46954 * 60.00590 * 22 21 20 38 38 H 1.09004 * 109.46633 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47455 * 300.00306 * 22 21 20 40 40 H 1.07998 * 119.98661 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6727 7 6 4.1310 0.9701 -1.2862 8 7 5.4380 0.8380 -1.3494 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8531 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3806 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3446 3.8792 2.5520 18 6 -1.5434 5.1696 2.0970 19 6 -2.8247 5.6733 1.9797 20 6 -3.9125 4.8877 2.3293 21 8 -5.1738 5.3833 2.2203 22 6 -5.3052 6.7219 1.7377 23 6 -3.7110 3.5933 2.7916 24 9 -4.7683 2.8246 3.1328 25 6 -2.4263 3.0924 2.9017 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0906 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -0.6961 5.7835 1.8291 36 1 -2.9787 6.6799 1.6200 37 1 -4.8758 6.7916 0.7383 38 1 -6.3605 6.9921 1.6990 39 1 -4.7798 7.4028 2.4072 40 1 -2.2682 2.0861 3.2605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183847604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:56 Heat of formation + Delta-G solvation = -103.892194 kcal Electronic energy + Delta-G solvation = -23629.650939 eV Core-core repulsion = 19938.073518 eV Total energy + Delta-G solvation = -3691.577421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.79204 -40.26768 -39.26859 -37.62174 -35.26657 -32.57673 -32.21539 -31.25229 -30.81770 -28.42369 -27.38845 -26.22133 -22.89153 -22.46700 -21.95949 -20.45709 -19.54094 -18.46599 -17.82216 -17.06464 -16.84272 -16.38066 -16.14165 -15.46797 -15.13834 -15.01781 -14.93879 -14.37850 -14.11818 -13.82735 -13.28759 -13.14531 -12.69926 -12.59511 -12.42907 -12.33153 -12.29714 -11.97133 -11.64579 -11.45851 -11.25103 -11.19732 -10.93034 -10.70357 -10.47440 -9.82146 -9.71014 -9.23387 -8.99100 -8.89826 -8.53515 -8.19120 -8.09039 -6.57500 -4.25528 1.06726 1.13197 2.94865 3.23224 3.35225 3.39513 3.44472 3.58199 4.07193 4.16103 4.39481 4.52946 4.59462 4.77847 4.87682 5.00858 5.13809 5.17498 5.18490 5.34722 5.35166 5.46153 5.56913 5.79507 5.97166 6.01838 6.03535 6.06496 6.23161 6.41395 6.51512 6.68094 6.74866 6.90036 7.00604 7.11220 7.32954 7.37963 7.62923 8.20622 8.45975 8.68485 8.98027 9.45030 10.82894 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.003450 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.039176 B = 8112.846363 C = 8208.044917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.905 5.905 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.288 1.288 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.542 6.542 16 C -0.104 4.104 17 C -0.061 4.061 18 C -0.074 4.074 19 C -0.179 4.179 20 C 0.088 3.912 21 O -0.313 6.313 22 C 0.027 3.973 23 C 0.070 3.930 24 F -0.135 7.135 25 C -0.102 4.102 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 9.934 9.999 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.539 5.539 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.420 6.420 16 C -0.145 4.145 17 C -0.062 4.062 18 C -0.093 4.093 19 C -0.198 4.198 20 C 0.043 3.957 21 O -0.226 6.226 22 C -0.068 4.068 23 C 0.050 3.950 24 F -0.114 7.114 25 C -0.120 4.120 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.807 9.147 7.837 20.678 hybrid contribution 0.314 0.694 1.898 2.045 sum -16.493 9.841 9.735 21.532 Atomic orbital electron populations 1.21890 0.97118 0.98966 1.02180 1.22250 0.94012 0.99957 1.01312 1.19223 0.95794 0.88502 0.82664 0.93423 1.22172 0.89781 1.48100 1.04727 0.92028 1.25696 0.97486 0.93590 1.00244 1.70838 1.04439 1.42525 1.36069 0.83947 0.75319 0.77224 0.75812 1.20696 1.19879 1.21404 1.46248 1.14632 1.56130 1.18076 1.20286 0.82684 0.79465 0.89007 1.90696 1.50907 1.59475 1.40899 1.20706 0.93963 1.01779 0.98005 1.19069 0.93929 0.93664 0.99535 1.20864 0.96567 0.95089 0.96738 1.21051 0.91939 1.00712 1.06075 1.18955 0.84802 0.92482 0.99504 1.86116 1.24005 1.31054 1.81464 1.23091 1.03662 0.81045 0.99007 1.16858 0.84288 0.87660 1.06212 1.91483 1.55209 1.74417 1.90279 1.20825 0.89635 1.00595 1.00986 0.93113 0.92929 0.95012 0.92308 0.92768 0.92151 0.77500 0.88220 0.88033 0.85062 0.84590 0.92382 0.88124 0.92519 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.52 37.16 0.32 -2.57 16 2 C -0.14 -2.99 5.20 -26.73 -0.14 -3.13 16 3 C 0.24 5.62 1.81 -69.08 -0.13 5.50 16 4 H 0.05 1.23 6.07 -51.93 -0.32 0.92 16 5 C -0.61 -16.18 9.09 -34.44 -0.31 -16.49 16 6 H 0.06 1.70 7.95 -52.49 -0.42 1.28 16 7 C 0.04 1.00 5.42 -17.82 -0.10 0.90 16 8 N -0.91 -26.89 13.70 55.43 0.76 -26.13 16 9 Si 1.05 25.36 25.39 -169.99 -4.32 21.04 16 10 H -0.28 -6.44 6.73 56.52 0.38 -6.06 16 11 H -0.27 -6.42 6.38 56.52 0.36 -6.06 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.70 -13.30 5.03 -54.93 -0.28 -13.58 16 14 C 0.50 8.76 6.41 -10.99 -0.07 8.69 16 15 O -0.54 -11.41 13.18 5.55 0.07 -11.34 16 16 C -0.10 -1.28 5.83 -29.04 -0.17 -1.44 16 17 C -0.06 -0.79 4.37 -104.61 -0.46 -1.25 16 18 C -0.07 -0.89 9.69 -39.59 -0.38 -1.27 16 19 C -0.18 -2.02 9.04 -39.45 -0.36 -2.38 16 20 C 0.09 1.15 6.69 -39.18 -0.26 0.89 16 21 O -0.31 -3.82 10.36 -19.61 -0.20 -4.02 16 22 C 0.03 0.20 9.81 101.05 0.99 1.19 16 23 C 0.07 0.98 7.31 -39.30 -0.29 0.70 16 24 F -0.14 -2.02 17.11 2.25 0.04 -1.98 16 25 C -0.10 -1.35 9.67 -39.54 -0.38 -1.73 16 26 H 0.05 0.99 5.64 -51.93 -0.29 0.70 16 27 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.35 4.43 -51.93 -0.23 1.12 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.86 8.72 -40.82 -0.36 7.51 16 32 H 0.39 6.50 8.53 -40.82 -0.35 6.15 16 33 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.14 1.15 6.30 -52.49 -0.33 0.82 16 37 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 40 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -32.70 331.40 -5.97 -38.67 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.31 Total: 4.75 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.73 Total: -12.41 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.48 Total: -39.71 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.13 Total: -15.36 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.32 Total: 21.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.70 -5.97 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183847604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.221 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds