Wall clock time and date at job start Tue Mar 31 2020 08:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.07998 * 120.00299 * 244.73777 * 5 3 2 7 7 C 1.37881 * 119.99818 * 64.73751 * 5 3 2 8 8 N 1.31514 * 119.99809 * 187.26380 * 7 5 3 9 9 Si 1.86797 * 120.00131 * 7.25952 * 7 5 3 10 10 H 1.48495 * 109.46960 * 269.99957 * 9 7 5 11 11 H 1.48501 * 109.47104 * 29.99939 * 9 7 5 12 12 H 1.48497 * 109.46898 * 149.99978 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34783 * 120.00142 * 275.00088 * 13 3 2 15 15 O 1.21283 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50695 * 119.99970 * 179.97438 * 14 13 3 17 17 C 1.50697 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.38262 * 119.93801 * 269.73288 * 17 16 14 19 19 C 1.38178 * 120.09988 * 179.72559 * 18 17 16 20 20 C 1.38665 * 119.96603 * 0.54307 * 19 18 17 21 21 O 1.35958 * 120.06552 * 179.70670 * 20 19 18 22 22 C 1.42901 * 116.99583 * 0.02562 * 21 20 19 23 23 C 1.38908 * 119.87307 * 359.72535 * 20 19 18 24 24 F 1.35101 * 120.04634 * 180.02562 * 23 20 19 25 25 C 1.38258 * 119.93827 * 89.99913 * 17 16 14 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.97003 * 119.99883 * 354.93902 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09001 * 109.47150 * 300.00196 * 16 14 13 34 34 H 1.08996 * 109.47068 * 60.00143 * 16 14 13 35 35 H 1.08005 * 119.95233 * 359.97114 * 18 17 16 36 36 H 1.08000 * 120.01918 * 180.27085 * 19 18 17 37 37 H 1.08996 * 109.46954 * 60.00590 * 22 21 20 38 38 H 1.09004 * 109.46633 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47455 * 300.00306 * 22 21 20 40 40 H 1.07998 * 119.98661 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6727 7 6 4.1310 0.9701 -1.2862 8 7 5.4380 0.8380 -1.3494 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8531 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3806 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3446 3.8792 2.5520 18 6 -1.5434 5.1696 2.0970 19 6 -2.8247 5.6733 1.9797 20 6 -3.9125 4.8877 2.3293 21 8 -5.1738 5.3833 2.2203 22 6 -5.3052 6.7219 1.7377 23 6 -3.7110 3.5933 2.7916 24 9 -4.7683 2.8246 3.1328 25 6 -2.4263 3.0924 2.9017 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0906 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -0.6961 5.7835 1.8291 36 1 -2.9787 6.6799 1.6200 37 1 -4.8758 6.7916 0.7383 38 1 -6.3605 6.9921 1.6990 39 1 -4.7798 7.4028 2.4072 40 1 -2.2682 2.0861 3.2605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183847604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:55 Heat of formation + Delta-G solvation = -125.954420 kcal Electronic energy + Delta-G solvation = -23630.607629 eV Core-core repulsion = 19938.073518 eV Total energy + Delta-G solvation = -3692.534111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.84991 -41.26255 -40.55396 -38.61813 -36.96791 -34.43316 -33.61933 -32.62592 -31.73298 -29.55276 -28.75363 -27.29002 -24.28570 -23.80660 -23.16215 -21.92490 -21.12940 -19.79874 -19.29565 -17.99463 -17.88350 -17.76414 -17.15249 -17.07064 -16.36851 -16.05797 -15.83349 -15.58796 -15.22529 -15.16877 -14.75000 -14.48837 -14.37514 -14.35113 -13.88121 -13.64685 -13.22174 -13.11617 -12.76307 -12.61154 -12.54410 -12.46119 -12.27634 -12.07600 -11.99785 -11.70821 -11.47928 -10.96099 -10.65371 -10.64720 -9.93366 -9.73392 -9.14489 -8.76093 -6.45154 0.12742 0.18577 1.41226 1.50206 1.67610 1.88189 2.18407 2.36073 2.39937 2.80786 3.03977 3.19847 3.61029 3.73423 3.99027 4.15814 4.22911 4.31070 4.36389 4.37510 4.38971 4.47939 4.49336 4.55975 4.67858 4.72372 4.86801 4.91572 5.04927 5.08423 5.13374 5.20488 5.30923 5.48053 5.55737 5.63119 5.69535 5.71982 6.02581 6.27592 6.54718 6.94722 7.30206 7.56069 8.62781 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.003450 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.039176 B = 8112.846363 C = 8208.044917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.247 3.753 4 H 0.023 0.977 5 C -0.602 4.602 6 H 0.043 0.957 7 C -0.010 4.010 8 N -0.937 5.937 9 Si 1.078 2.922 10 H -0.260 1.260 11 H -0.267 1.267 12 H -0.288 1.288 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.578 6.578 16 C -0.091 4.091 17 C -0.076 4.076 18 C -0.077 4.077 19 C -0.177 4.177 20 C 0.082 3.918 21 O -0.335 6.335 22 C 0.016 3.984 23 C 0.038 3.962 24 F -0.148 7.148 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.258 0.742 32 H 0.404 0.596 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.322 10.833 10.695 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 C 0.142 3.858 4 H 0.041 0.959 5 C -0.640 4.640 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.574 5.574 9 Si 0.902 3.098 10 H -0.186 1.186 11 H -0.192 1.192 12 H -0.214 1.214 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.458 6.458 16 C -0.130 4.130 17 C -0.077 4.077 18 C -0.095 4.095 19 C -0.195 4.195 20 C 0.036 3.964 21 O -0.249 6.249 22 C -0.078 4.078 23 C 0.019 3.981 24 F -0.127 7.127 25 C -0.125 4.125 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.239 0.761 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.183 0.817 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.027 10.061 8.577 22.355 hybrid contribution 0.641 0.535 1.732 1.923 sum -17.386 10.596 10.309 22.822 Atomic orbital electron populations 1.21768 0.95417 1.00334 1.01569 1.22157 0.95438 0.98616 1.01117 1.18839 0.93267 0.89609 0.84069 0.95923 1.22388 0.91705 1.46224 1.03670 0.93859 1.26764 0.97666 0.93784 1.02769 1.70932 1.05403 1.44918 1.36100 0.83552 0.74379 0.78368 0.73487 1.18565 1.19167 1.21418 1.46086 1.15864 1.56483 1.16988 1.21126 0.81320 0.78383 0.90379 1.90685 1.51733 1.60613 1.42784 1.20684 0.94071 1.02914 0.95365 1.19212 0.93982 0.94215 1.00273 1.21207 0.97498 0.95051 0.95756 1.21365 0.91188 1.01756 1.05199 1.19161 0.85721 0.92373 0.99127 1.86094 1.23770 1.33403 1.81648 1.23430 1.05456 0.79234 0.99632 1.17208 0.84444 0.88538 1.07937 1.91439 1.55786 1.74833 1.90609 1.20983 0.89555 1.01086 1.00924 0.92766 0.94496 0.92607 0.93417 0.92047 0.93250 0.76091 0.85413 0.85107 0.83183 0.81741 0.91664 0.86171 0.90777 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.52 71.98 0.61 -4.47 16 2 C -0.13 -5.70 5.20 30.59 0.16 -5.54 16 3 C 0.25 11.30 1.81 44.24 0.08 11.38 16 4 H 0.02 1.17 6.07 -2.39 -0.01 1.16 16 5 C -0.60 -31.97 9.09 25.60 0.23 -31.73 16 6 H 0.04 2.41 7.95 -2.91 -0.02 2.39 16 7 C -0.01 -0.57 5.42 84.66 0.46 -0.11 16 8 N -0.94 -56.51 13.70 21.45 0.29 -56.21 16 9 Si 1.08 50.92 25.39 68.60 1.74 52.67 16 10 H -0.26 -11.38 6.73 99.48 0.67 -10.71 16 11 H -0.27 -12.20 6.38 99.48 0.63 -11.57 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.70 -25.53 5.03 -446.10 -2.24 -27.77 16 14 C 0.50 16.45 6.41 87.65 0.56 17.01 16 15 O -0.58 -23.57 13.18 -3.04 -0.04 -23.61 16 16 C -0.09 -1.93 5.83 29.10 0.17 -1.76 16 17 C -0.08 -1.79 4.37 -19.86 -0.09 -1.87 16 18 C -0.08 -1.64 9.69 22.26 0.22 -1.42 16 19 C -0.18 -3.57 9.04 22.36 0.20 -3.37 16 20 C 0.08 2.05 6.69 22.53 0.15 2.20 16 21 O -0.33 -7.78 10.36 -93.08 -0.96 -8.75 16 22 C 0.02 0.20 9.81 113.37 1.11 1.32 16 23 C 0.04 1.07 7.31 22.45 0.16 1.23 16 24 F -0.15 -4.45 17.11 44.97 0.77 -3.68 16 25 C -0.11 -2.70 9.67 22.30 0.22 -2.48 16 26 H 0.05 2.01 5.64 -2.39 -0.01 1.99 16 27 H 0.04 1.50 7.87 -2.38 -0.02 1.48 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.11 4.43 -2.39 -0.01 2.10 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.26 15.52 8.72 -92.71 -0.81 14.71 16 32 H 0.40 12.64 8.53 -92.71 -0.79 11.85 16 33 H 0.13 2.04 8.08 -2.39 -0.02 2.02 16 34 H 0.13 2.06 8.08 -2.39 -0.02 2.04 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.17 2.24 6.30 -2.91 -0.02 2.22 16 37 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 38 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 40 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -71.63 331.40 3.94 -67.69 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.13 Total: 19.30 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.25 Total: -19.62 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.95 Total: -83.99 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.00 Total: -32.36 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.77 Total: -3.68 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 1.74 Total: 52.67 kcal Total: -71.63 3.94 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183847604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.266 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds