Wall clock time and date at job start Tue Mar 31 2020 08:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 H 1.09002 * 109.47140 * 55.00165 * 3 2 1 5 5 C 1.50698 * 109.46928 * 174.99745 * 3 2 1 6 6 H 1.08001 * 119.99810 * 120.00155 * 5 3 2 7 7 C 1.37883 * 120.00353 * 300.00169 * 5 3 2 8 8 N 1.31507 * 120.00297 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99588 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47509 * 89.99705 * 9 7 5 11 11 H 1.48506 * 109.46985 * 209.99827 * 9 7 5 12 12 H 1.48504 * 109.47234 * 329.99513 * 9 7 5 13 13 N 1.46496 * 109.47564 * 294.99756 * 3 2 1 14 14 C 1.34777 * 119.99875 * 84.99810 * 13 3 2 15 15 O 1.21279 * 120.00162 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00146 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46953 * 180.02562 * 16 14 13 18 18 O 1.42905 * 109.46728 * 180.02562 * 17 16 14 19 19 C 1.35941 * 116.99999 * 179.97438 * 18 17 16 20 20 C 1.38717 * 120.02894 * 359.72167 * 19 18 17 21 21 C 1.38149 * 119.96734 * 179.79054 * 20 19 18 22 22 C 1.38453 * 120.03215 * 0.48987 * 21 20 19 23 23 F 1.35104 * 119.97222 * 179.72397 * 22 21 20 24 24 C 1.38457 * 120.05801 * 359.74019 * 22 21 20 25 25 C 1.38143 * 120.03392 * 0.02562 * 24 22 21 26 26 H 1.08993 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47329 * 300.00002 * 1 2 3 28 28 H 1.09004 * 109.47040 * 59.99755 * 1 2 3 29 29 H 1.08993 * 109.46967 * 239.99989 * 2 1 3 30 30 H 1.08994 * 109.46588 * 120.00046 * 2 1 3 31 31 H 0.96995 * 120.00024 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00082 * 265.00829 * 13 3 2 33 33 H 1.09000 * 109.46974 * 60.00144 * 16 14 13 34 34 H 1.09001 * 109.46547 * 300.00234 * 16 14 13 35 35 H 1.09000 * 109.47486 * 60.00062 * 17 16 14 36 36 H 1.09001 * 109.47362 * 299.99339 * 17 16 14 37 37 H 1.07998 * 120.01538 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.98405 * 180.20699 * 21 20 19 39 39 H 1.08006 * 119.98074 * 180.02562 * 24 22 21 40 40 H 1.08001 * 120.02046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 5.4539 0.8795 1.3359 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7936 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4342 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8946 -2.5210 18 8 -1.7609 4.5326 -3.7425 19 6 -3.0024 5.0841 -3.7918 20 6 -3.8405 5.0072 -2.6892 21 6 -5.1003 5.5718 -2.7392 22 6 -5.5304 6.2054 -3.8927 23 9 -6.7648 6.7523 -3.9422 24 6 -4.6966 6.2787 -4.9957 25 6 -3.4345 5.7192 -4.9468 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8770 0.4811 2.1125 32 1 2.2720 2.1231 -1.9977 33 1 0.0674 2.6131 -3.4685 34 1 0.7278 4.1530 -2.8678 35 1 -1.4131 4.6194 -1.7074 36 1 -2.0741 3.0796 -2.3079 37 1 -3.5069 4.5094 -1.7907 38 1 -5.7518 5.5150 -1.8797 39 1 -5.0332 6.7736 -5.8947 40 1 -2.7845 5.7761 -5.8074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183897645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:45 Heat of formation + Delta-G solvation = -100.542438 kcal Electronic energy + Delta-G solvation = -22864.696593 eV Core-core repulsion = 19173.264428 eV Total energy + Delta-G solvation = -3691.432165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.05371 -40.38669 -39.34795 -37.47976 -35.48291 -32.62075 -32.20883 -31.57831 -31.12564 -29.31246 -27.60306 -24.89340 -23.17280 -22.67147 -22.10368 -20.60332 -19.67229 -18.69523 -17.68507 -17.10047 -16.84274 -16.52176 -15.85240 -15.77766 -15.68595 -14.97768 -14.87823 -14.41829 -14.25727 -13.91153 -13.55342 -13.33299 -13.12681 -12.89133 -12.85530 -12.41354 -12.06717 -11.92398 -11.80294 -11.64407 -11.14245 -11.03704 -10.95537 -10.80558 -10.67712 -9.98507 -9.64649 -9.49606 -9.30949 -9.23831 -8.80963 -8.35869 -8.16523 -6.25944 -4.28936 0.85550 0.93749 2.78315 3.08958 3.19453 3.28668 3.31696 3.35676 4.01588 4.05075 4.26756 4.38388 4.49050 4.72901 4.82701 4.88766 5.00673 5.07518 5.19369 5.24716 5.48688 5.58595 5.67545 5.69221 5.83098 5.85322 5.89854 5.96436 5.97157 6.11353 6.41999 6.58861 6.63349 6.77227 6.87853 7.11331 7.18473 7.22566 7.44583 8.06519 8.44318 8.69227 8.82508 9.34438 10.86081 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.002613 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.889997 B =10713.219279 C =11090.322744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.508 3.492 15 O -0.553 6.553 16 C -0.142 4.142 17 C 0.075 3.925 18 O -0.314 6.314 19 C 0.129 3.871 20 C -0.180 4.180 21 C -0.111 4.111 22 C 0.052 3.948 23 F -0.144 7.144 24 C -0.115 4.115 25 C -0.127 4.127 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.286 7.568 -11.874 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.344 5.344 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.182 4.182 17 C 0.000 4.000 18 O -0.228 6.228 19 C 0.083 3.917 20 C -0.199 4.199 21 C -0.130 4.130 22 C 0.033 3.967 23 F -0.123 7.123 24 C -0.133 4.133 25 C -0.145 4.145 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.528 7.488 -11.217 22.116 hybrid contribution -0.308 -0.489 0.606 0.837 sum -17.836 6.999 -10.612 21.903 Atomic orbital electron populations 1.21874 0.96964 0.99079 1.02162 1.22292 0.94337 0.99950 1.01205 1.19172 0.95698 0.88508 0.82745 0.93245 1.21044 0.88565 1.39967 1.07909 0.90153 1.24839 0.94875 0.95126 0.97683 1.69860 1.08698 1.44365 1.29846 0.86900 0.80930 0.79955 0.80915 1.20225 1.22140 1.18480 1.46145 1.14656 1.55509 1.18125 1.20046 0.82821 0.79264 0.88591 1.90684 1.51541 1.60330 1.40764 1.21510 0.96244 1.02269 0.98212 1.22533 0.95997 0.97151 0.84345 1.86010 1.28906 1.69354 1.38495 1.19024 0.84722 0.93793 0.94161 1.21288 0.94609 1.04505 0.99463 1.20972 0.96709 0.97921 0.97384 1.17587 0.81681 1.01404 0.96008 1.91485 1.39834 1.83948 1.96983 1.20935 0.93428 1.00839 0.98135 1.20291 0.96176 1.00672 0.97407 0.94934 0.92862 0.93033 0.92242 0.92721 0.92227 0.76964 0.88136 0.87986 0.90796 0.90897 0.83929 0.84455 0.84158 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.52 37.16 0.32 -2.43 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.47 1.83 -69.09 -0.13 5.34 16 4 H 0.05 1.24 6.64 -51.93 -0.34 0.90 16 5 C -0.54 -14.04 9.31 -34.44 -0.32 -14.36 16 6 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 9 Si 0.88 21.28 24.41 -169.99 -4.15 17.13 16 10 H -0.28 -6.44 6.83 56.52 0.39 -6.05 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.70 -12.67 5.02 -54.93 -0.28 -12.95 16 14 C 0.51 8.42 6.40 -10.98 -0.07 8.35 16 15 O -0.55 -10.84 13.12 5.56 0.07 -10.77 16 16 C -0.14 -1.68 6.07 -27.88 -0.17 -1.85 16 17 C 0.07 0.87 4.03 37.16 0.15 1.02 16 18 O -0.31 -3.59 10.14 -19.56 -0.20 -3.79 16 19 C 0.13 1.38 6.69 -39.23 -0.26 1.12 16 20 C -0.18 -1.84 9.04 -39.44 -0.36 -2.19 16 21 C -0.11 -1.07 10.02 -39.53 -0.40 -1.46 16 22 C 0.05 0.52 7.30 -39.42 -0.29 0.23 16 23 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.11 -0.99 10.02 -39.54 -0.40 -1.38 16 25 C -0.13 -1.16 9.98 -39.44 -0.39 -1.55 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 28 H 0.05 0.94 5.65 -51.93 -0.29 0.65 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.24 3.21 -51.93 -0.17 1.07 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.40 6.31 8.54 -40.82 -0.35 5.96 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 36 H 0.07 0.86 7.61 -51.93 -0.39 0.46 16 37 H 0.14 1.38 6.30 -52.49 -0.33 1.05 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.33 330.58 -6.55 -36.88 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.24 Total: 5.36 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.55 Total: -10.21 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.50 Total: -38.10 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.13 Total: -14.56 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.33 -6.55 -36.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183897645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.666 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds