Wall clock time and date at job start Tue Mar 31 2020 08:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 H 1.09002 * 109.47140 * 55.00165 * 3 2 1 5 5 C 1.50698 * 109.46928 * 174.99745 * 3 2 1 6 6 H 1.08001 * 119.99810 * 120.00155 * 5 3 2 7 7 C 1.37883 * 120.00353 * 300.00169 * 5 3 2 8 8 N 1.31507 * 120.00297 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99588 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47509 * 89.99705 * 9 7 5 11 11 H 1.48506 * 109.46985 * 209.99827 * 9 7 5 12 12 H 1.48504 * 109.47234 * 329.99513 * 9 7 5 13 13 N 1.46496 * 109.47564 * 294.99756 * 3 2 1 14 14 C 1.34777 * 119.99875 * 84.99810 * 13 3 2 15 15 O 1.21279 * 120.00162 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00146 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46953 * 180.02562 * 16 14 13 18 18 O 1.42905 * 109.46728 * 180.02562 * 17 16 14 19 19 C 1.35941 * 116.99999 * 179.97438 * 18 17 16 20 20 C 1.38717 * 120.02894 * 359.72167 * 19 18 17 21 21 C 1.38149 * 119.96734 * 179.79054 * 20 19 18 22 22 C 1.38453 * 120.03215 * 0.48987 * 21 20 19 23 23 F 1.35104 * 119.97222 * 179.72397 * 22 21 20 24 24 C 1.38457 * 120.05801 * 359.74019 * 22 21 20 25 25 C 1.38143 * 120.03392 * 0.02562 * 24 22 21 26 26 H 1.08993 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47329 * 300.00002 * 1 2 3 28 28 H 1.09004 * 109.47040 * 59.99755 * 1 2 3 29 29 H 1.08993 * 109.46967 * 239.99989 * 2 1 3 30 30 H 1.08994 * 109.46588 * 120.00046 * 2 1 3 31 31 H 0.96995 * 120.00024 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00082 * 265.00829 * 13 3 2 33 33 H 1.09000 * 109.46974 * 60.00144 * 16 14 13 34 34 H 1.09001 * 109.46547 * 300.00234 * 16 14 13 35 35 H 1.09000 * 109.47486 * 60.00062 * 17 16 14 36 36 H 1.09001 * 109.47362 * 299.99339 * 17 16 14 37 37 H 1.07998 * 120.01538 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.98405 * 180.20699 * 21 20 19 39 39 H 1.08006 * 119.98074 * 180.02562 * 24 22 21 40 40 H 1.08001 * 120.02046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 5.4539 0.8795 1.3359 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7936 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4342 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8946 -2.5210 18 8 -1.7609 4.5326 -3.7425 19 6 -3.0024 5.0841 -3.7918 20 6 -3.8405 5.0072 -2.6892 21 6 -5.1003 5.5718 -2.7392 22 6 -5.5304 6.2054 -3.8927 23 9 -6.7648 6.7523 -3.9422 24 6 -4.6966 6.2787 -4.9957 25 6 -3.4345 5.7192 -4.9468 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8770 0.4811 2.1125 32 1 2.2720 2.1231 -1.9977 33 1 0.0674 2.6131 -3.4685 34 1 0.7278 4.1530 -2.8678 35 1 -1.4131 4.6194 -1.7074 36 1 -2.0741 3.0796 -2.3079 37 1 -3.5069 4.5094 -1.7907 38 1 -5.7518 5.5150 -1.8797 39 1 -5.0332 6.7736 -5.8947 40 1 -2.7845 5.7761 -5.8074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183897645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:44 Heat of formation + Delta-G solvation = -119.919297 kcal Electronic energy + Delta-G solvation = -22865.536836 eV Core-core repulsion = 19173.264428 eV Total energy + Delta-G solvation = -3692.272408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.82985 -41.27027 -40.66562 -38.29985 -37.13275 -34.40258 -33.66300 -32.64273 -32.08925 -30.15045 -29.36874 -25.95804 -24.52721 -23.84199 -23.01518 -22.07704 -21.16502 -19.60737 -18.90621 -18.38411 -17.73840 -17.55063 -17.37932 -17.17494 -16.56546 -16.22002 -16.01193 -15.63219 -15.29442 -15.09799 -14.71637 -14.56836 -14.42607 -14.00368 -13.87880 -13.70098 -13.60422 -13.49829 -12.98453 -12.76682 -12.66595 -12.66252 -12.37493 -11.85099 -11.78528 -11.67343 -11.37852 -11.22828 -10.86620 -10.72113 -10.19703 -9.75816 -9.13584 -8.37958 -6.43268 0.15134 0.18208 1.27065 1.35401 1.44483 1.76940 1.83865 2.25854 2.55540 2.76038 2.98219 3.31403 3.62682 3.78629 3.81207 3.97941 4.08609 4.11759 4.25512 4.30247 4.34047 4.42243 4.49534 4.61448 4.77189 4.82036 4.86321 4.91420 5.03171 5.12146 5.13596 5.13857 5.23420 5.23936 5.42161 5.53450 5.67377 5.69092 6.14241 6.29975 6.59748 6.88868 7.19883 7.46656 8.77218 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.002613 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.889997 B =10713.219279 C =11090.322744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C 0.249 3.751 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.936 3.064 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.508 3.492 15 O -0.583 6.583 16 C -0.129 4.129 17 C 0.080 3.920 18 O -0.316 6.316 19 C 0.111 3.889 20 C -0.189 4.189 21 C -0.117 4.117 22 C 0.039 3.961 23 F -0.149 7.149 24 C -0.109 4.109 25 C -0.125 4.125 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.269 0.731 32 H 0.409 0.591 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.166 0.834 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.903 7.514 -13.325 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.144 3.856 4 H 0.041 0.959 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.764 3.236 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.183 1.183 13 N -0.348 5.348 14 C 0.295 3.705 15 O -0.465 6.465 16 C -0.168 4.168 17 C 0.004 3.996 18 O -0.230 6.230 19 C 0.065 3.935 20 C -0.207 4.207 21 C -0.135 4.135 22 C 0.020 3.980 23 F -0.128 7.128 24 C -0.128 4.128 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.164 7.444 -12.704 24.167 hybrid contribution 0.167 -0.377 0.979 1.063 sum -18.997 7.066 -11.725 23.415 Atomic orbital electron populations 1.21765 0.95079 1.00544 1.01708 1.22213 0.95956 0.98508 1.01018 1.18777 0.93074 0.89692 0.84053 0.95863 1.21320 0.90501 1.38399 1.06864 0.92449 1.25556 0.95698 0.95974 0.99911 1.69972 1.10306 1.46208 1.30867 0.86038 0.79350 0.79930 0.78302 1.18670 1.22331 1.18328 1.45975 1.15843 1.55928 1.17054 1.20761 0.81589 0.78290 0.89819 1.90676 1.52224 1.61188 1.42379 1.21402 0.96611 1.03004 0.95796 1.22395 0.95807 0.96937 0.84452 1.85975 1.29416 1.69591 1.38003 1.19286 0.84605 0.94609 0.94995 1.21344 0.94916 1.04909 0.99564 1.21136 0.96737 0.97710 0.97951 1.17819 0.81755 1.01781 0.96662 1.91471 1.40227 1.84083 1.97039 1.21216 0.92892 1.00093 0.98568 1.20549 0.96519 0.99856 0.97463 0.92464 0.94454 0.92356 0.91240 0.94035 0.92135 0.75600 0.85568 0.86134 0.91603 0.91177 0.83993 0.83289 0.81690 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 8.52 71.98 0.61 -4.22 16 2 C -0.14 -5.69 5.11 30.60 0.16 -5.53 16 3 C 0.25 11.14 1.83 44.24 0.08 11.22 16 4 H 0.02 1.18 6.64 -2.39 -0.02 1.16 16 5 C -0.53 -28.12 9.31 25.60 0.24 -27.88 16 6 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.57 5.45 84.66 0.46 2.03 16 8 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 9 Si 0.94 44.00 24.41 68.60 1.67 45.68 16 10 H -0.26 -11.56 6.83 99.48 0.68 -10.88 16 11 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.26 -11.99 6.53 99.48 0.65 -11.34 16 13 N -0.70 -24.61 5.02 -446.10 -2.24 -26.85 16 14 C 0.51 16.04 6.40 87.66 0.56 16.60 16 15 O -0.58 -22.32 13.12 -3.03 -0.04 -22.36 16 16 C -0.13 -2.71 6.07 29.85 0.18 -2.53 16 17 C 0.08 1.72 4.03 71.98 0.29 2.01 16 18 O -0.32 -6.57 10.14 -92.89 -0.94 -7.51 16 19 C 0.11 2.19 6.69 22.50 0.15 2.34 16 20 C -0.19 -3.67 9.04 22.36 0.20 -3.46 16 21 C -0.12 -2.12 10.02 22.30 0.22 -1.89 16 22 C 0.04 0.72 7.30 22.37 0.16 0.88 16 23 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 24 C -0.11 -1.63 10.02 22.30 0.22 -1.41 16 25 C -0.13 -1.99 9.98 22.36 0.22 -1.77 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.45 7.85 -2.39 -0.02 1.43 16 28 H 0.06 2.01 5.65 -2.38 -0.01 1.99 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.04 1.81 3.21 -2.39 -0.01 1.81 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.41 12.43 8.54 -92.71 -0.79 11.64 16 33 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.52 7.63 -2.39 -0.02 1.50 16 36 H 0.07 1.55 7.61 -2.39 -0.02 1.53 16 37 H 0.14 2.69 6.30 -2.91 -0.02 2.67 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -65.35 330.58 3.49 -61.86 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.19 Total: 20.05 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 3.77 Total: -13.63 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.94 Total: -81.92 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.98 Total: -29.86 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.67 Total: 45.68 kcal Total: -65.35 3.49 -61.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183897645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.055 kcal (2) G-P(sol) polarization free energy of solvation -65.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds