Wall clock time and date at job start Tue Mar 31 2020 08:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 H 1.08991 * 109.47012 * 55.00437 * 3 2 1 5 5 C 1.50704 * 109.46883 * 175.00294 * 3 2 1 6 6 H 1.07996 * 120.00175 * 120.00039 * 5 3 2 7 7 C 1.37885 * 119.99883 * 299.99800 * 5 3 2 8 8 N 1.31513 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99972 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46831 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46950 * 119.99839 * 9 7 5 12 12 H 1.48493 * 109.47009 * 240.00208 * 9 7 5 13 13 N 1.46491 * 109.47068 * 294.99921 * 3 2 1 14 14 C 1.34777 * 119.99826 * 85.00323 * 13 3 2 15 15 O 1.21284 * 120.00043 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00111 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47443 * 179.97438 * 16 14 13 18 18 O 1.42893 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.35956 * 117.00026 * 179.97438 * 18 17 16 20 20 C 1.38657 * 120.06128 * 359.97438 * 19 18 17 21 21 C 1.38184 * 119.96964 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.09281 * 359.97438 * 21 20 19 23 23 C 1.38248 * 120.12705 * 0.02562 * 22 21 20 24 24 C 1.38332 * 120.03366 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.05240 * 180.02562 * 24 23 22 26 26 H 1.09003 * 109.46801 * 299.99619 * 1 2 3 27 27 H 1.08994 * 109.47274 * 59.99904 * 1 2 3 28 28 H 1.09007 * 109.46672 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47048 * 239.99929 * 2 1 3 30 30 H 1.09004 * 109.47270 * 120.00085 * 2 1 3 31 31 H 0.97002 * 120.00248 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00702 * 264.99795 * 13 3 2 33 33 H 1.09007 * 109.47324 * 59.99956 * 16 14 13 34 34 H 1.09001 * 109.47308 * 299.99976 * 16 14 13 35 35 H 1.08994 * 109.46599 * 59.99619 * 17 16 14 36 36 H 1.09001 * 109.46881 * 300.00277 * 17 16 14 37 37 H 1.08004 * 120.01774 * 0.03769 * 20 19 18 38 38 H 1.08000 * 119.95526 * 180.27319 * 21 20 19 39 39 H 1.08001 * 119.93128 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.98480 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3991 1.6167 2.6101 12 1 6.4971 -0.5175 1.4628 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4343 16 6 0.0366 3.3386 -2.6543 17 6 -1.3827 3.8943 -2.5210 18 8 -1.7608 4.5331 -3.7421 19 6 -3.0029 5.0837 -3.7917 20 6 -3.8399 5.0101 -2.6888 21 6 -5.1022 5.5699 -2.7415 22 6 -5.5318 6.2040 -3.8926 23 6 -4.7004 6.2797 -4.9946 24 6 -3.4358 5.7211 -4.9476 25 9 -2.6229 5.7953 -6.0241 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8294 -0.0619 2.9495 32 1 2.2719 2.1232 -1.9978 33 1 0.0679 2.6146 -3.4686 34 1 0.7280 4.1541 -2.8666 35 1 -1.4144 4.6182 -1.7068 36 1 -2.0738 3.0785 -2.3090 37 1 -3.5054 4.5156 -1.7887 38 1 -5.7523 5.5163 -1.8808 39 1 -6.5190 6.6403 -3.9311 40 1 -5.0382 6.7759 -5.8925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183926188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:50 Heat of formation + Delta-G solvation = -107.283530 kcal Electronic energy + Delta-G solvation = -23019.999617 eV Core-core repulsion = 19328.275136 eV Total energy + Delta-G solvation = -3691.724480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.90774 -40.22179 -39.11864 -37.60909 -35.18350 -32.54460 -32.04865 -30.93167 -30.80405 -29.58782 -27.09405 -24.82294 -23.09270 -22.70118 -22.10728 -20.17669 -19.39385 -18.69902 -17.36784 -16.89587 -16.73556 -16.56137 -15.74104 -15.56481 -15.31277 -15.00951 -14.59697 -14.55995 -14.32596 -13.95944 -13.22507 -13.03803 -12.91165 -12.71009 -12.26349 -12.19290 -11.80099 -11.68145 -11.46590 -11.29444 -11.17946 -10.99168 -10.88205 -10.81280 -10.34752 -10.22275 -9.67844 -9.19408 -9.14069 -9.06935 -8.54457 -8.40211 -7.89771 -6.16333 -4.25803 0.87776 1.02664 2.80026 3.21175 3.28017 3.29850 3.32357 3.34380 3.99399 4.17748 4.37911 4.49189 4.58704 4.87028 4.94705 4.96934 4.98552 5.15286 5.24685 5.32171 5.62679 5.71763 5.78157 5.79762 5.81973 5.94865 6.14171 6.34653 6.40543 6.43514 6.60891 6.99065 7.13173 7.14822 7.31073 7.38388 7.57371 7.68051 7.85207 8.13626 8.58853 8.72471 9.04315 9.41640 10.89028 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002712 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.599495 B =10321.759340 C =10786.525649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.507 3.493 15 O -0.552 6.552 16 C -0.143 4.143 17 C 0.076 3.924 18 O -0.311 6.311 19 C 0.106 3.894 20 C -0.182 4.182 21 C -0.088 4.088 22 C -0.135 4.135 23 C -0.119 4.119 24 C 0.063 3.937 25 F -0.134 7.134 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 9.016 -11.948 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.291 3.709 15 O -0.432 6.432 16 C -0.183 4.183 17 C 0.001 3.999 18 O -0.224 6.224 19 C 0.059 3.941 20 C -0.200 4.200 21 C -0.107 4.107 22 C -0.153 4.153 23 C -0.138 4.138 24 C 0.043 3.957 25 F -0.112 7.112 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.607 8.864 -11.253 20.459 hybrid contribution 1.415 -0.114 -0.237 1.440 sum -13.192 8.751 -11.490 19.561 Atomic orbital electron populations 1.21839 0.98376 0.98075 1.01136 1.21942 0.92598 0.99793 1.02364 1.18817 0.94293 0.89201 0.80895 0.93236 1.21271 0.90679 1.39017 1.06321 0.91995 1.24893 0.98668 0.94771 0.95374 1.69900 1.35079 1.37603 1.09370 0.86396 0.84797 0.77798 0.78139 1.19726 1.20874 1.20853 1.46477 1.14418 1.55584 1.18705 1.19968 0.83088 0.79485 0.88363 1.90683 1.51451 1.60371 1.40709 1.21537 0.96023 1.02161 0.98606 1.22559 0.96190 0.97081 0.84066 1.86053 1.28238 1.69335 1.38819 1.19029 0.85976 0.95416 0.93673 1.21359 0.95332 1.04857 0.98488 1.21066 0.95198 0.96128 0.98272 1.20921 1.00168 1.01465 0.92759 1.21000 0.91765 1.00489 1.00521 1.17027 0.90384 1.04999 0.83278 1.91500 1.72146 1.94816 1.52786 0.93145 0.94377 0.95819 0.94988 0.88237 0.92584 0.77736 0.88347 0.88254 0.90756 0.90806 0.83903 0.84983 0.84957 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.33 11.29 55.43 0.63 -23.70 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.70 -13.86 5.02 -54.94 -0.28 -14.14 16 14 C 0.51 9.28 6.40 -10.99 -0.07 9.21 16 15 O -0.55 -11.87 13.12 5.55 0.07 -11.80 16 16 C -0.14 -1.95 6.07 -27.88 -0.17 -2.12 16 17 C 0.08 1.02 4.03 37.16 0.15 1.17 16 18 O -0.31 -4.30 10.00 -19.60 -0.20 -4.50 16 19 C 0.11 1.34 6.69 -39.18 -0.26 1.08 16 20 C -0.18 -1.97 9.04 -39.45 -0.36 -2.32 16 21 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 22 C -0.13 -1.06 10.04 -39.57 -0.40 -1.46 16 23 C -0.12 -1.08 10.02 -39.54 -0.40 -1.48 16 24 C 0.06 0.76 7.31 -39.30 -0.29 0.47 16 25 F -0.13 -1.78 17.11 2.25 0.04 -1.74 16 26 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 27 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.00 7.62 -51.93 -0.40 0.61 16 36 H 0.07 0.99 7.62 -51.93 -0.40 0.59 16 37 H 0.14 1.49 6.30 -52.48 -0.33 1.16 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -29.92 337.16 -7.61 -37.53 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.37 Total: 6.44 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.57 Total: -8.49 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.35 Total: -37.84 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.12 Total: -16.30 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.92 -7.61 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183926188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.753 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds