Wall clock time and date at job start Tue Mar 31 2020 08:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 H 1.08991 * 109.47012 * 55.00437 * 3 2 1 5 5 C 1.50704 * 109.46883 * 175.00294 * 3 2 1 6 6 H 1.07996 * 120.00175 * 120.00039 * 5 3 2 7 7 C 1.37885 * 119.99883 * 299.99800 * 5 3 2 8 8 N 1.31513 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99972 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46831 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46950 * 119.99839 * 9 7 5 12 12 H 1.48493 * 109.47009 * 240.00208 * 9 7 5 13 13 N 1.46491 * 109.47068 * 294.99921 * 3 2 1 14 14 C 1.34777 * 119.99826 * 85.00323 * 13 3 2 15 15 O 1.21284 * 120.00043 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00111 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47443 * 179.97438 * 16 14 13 18 18 O 1.42893 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.35956 * 117.00026 * 179.97438 * 18 17 16 20 20 C 1.38657 * 120.06128 * 359.97438 * 19 18 17 21 21 C 1.38184 * 119.96964 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.09281 * 359.97438 * 21 20 19 23 23 C 1.38248 * 120.12705 * 0.02562 * 22 21 20 24 24 C 1.38332 * 120.03366 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.05240 * 180.02562 * 24 23 22 26 26 H 1.09003 * 109.46801 * 299.99619 * 1 2 3 27 27 H 1.08994 * 109.47274 * 59.99904 * 1 2 3 28 28 H 1.09007 * 109.46672 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47048 * 239.99929 * 2 1 3 30 30 H 1.09004 * 109.47270 * 120.00085 * 2 1 3 31 31 H 0.97002 * 120.00248 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00702 * 264.99795 * 13 3 2 33 33 H 1.09007 * 109.47324 * 59.99956 * 16 14 13 34 34 H 1.09001 * 109.47308 * 299.99976 * 16 14 13 35 35 H 1.08994 * 109.46599 * 59.99619 * 17 16 14 36 36 H 1.09001 * 109.46881 * 300.00277 * 17 16 14 37 37 H 1.08004 * 120.01774 * 0.03769 * 20 19 18 38 38 H 1.08000 * 119.95526 * 180.27319 * 21 20 19 39 39 H 1.08001 * 119.93128 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.98480 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3991 1.6167 2.6101 12 1 6.4971 -0.5175 1.4628 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4343 16 6 0.0366 3.3386 -2.6543 17 6 -1.3827 3.8943 -2.5210 18 8 -1.7608 4.5331 -3.7421 19 6 -3.0029 5.0837 -3.7917 20 6 -3.8399 5.0101 -2.6888 21 6 -5.1022 5.5699 -2.7415 22 6 -5.5318 6.2040 -3.8926 23 6 -4.7004 6.2797 -4.9946 24 6 -3.4358 5.7211 -4.9476 25 9 -2.6229 5.7953 -6.0241 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8294 -0.0619 2.9495 32 1 2.2719 2.1232 -1.9978 33 1 0.0679 2.6146 -3.4686 34 1 0.7280 4.1541 -2.8666 35 1 -1.4144 4.6182 -1.7068 36 1 -2.0738 3.0785 -2.3090 37 1 -3.5054 4.5156 -1.7887 38 1 -5.7523 5.5163 -1.8808 39 1 -6.5190 6.6403 -3.9311 40 1 -5.0382 6.7759 -5.8925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183926188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:49 Heat of formation + Delta-G solvation = -125.252036 kcal Electronic energy + Delta-G solvation = -23020.778790 eV Core-core repulsion = 19328.275136 eV Total energy + Delta-G solvation = -3692.503653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.82478 -41.20969 -40.56413 -38.48483 -36.98216 -34.32595 -33.47104 -32.40077 -31.66689 -30.49898 -28.95126 -26.04213 -24.81000 -23.53912 -23.12152 -21.81930 -21.07329 -19.68669 -18.72306 -18.14918 -17.64593 -17.60620 -17.21015 -17.08922 -16.63843 -16.08029 -15.93784 -15.81554 -15.38981 -15.01230 -14.68629 -14.57799 -14.29243 -13.84839 -13.61792 -13.38726 -13.17848 -13.02319 -12.85593 -12.80958 -12.69233 -12.52669 -12.15668 -12.05817 -12.03717 -11.82372 -11.58097 -11.04348 -10.73485 -10.52390 -9.95292 -9.64048 -9.24404 -8.16832 -6.33633 0.12054 0.25680 1.43385 1.45127 1.56275 1.77248 1.80611 2.38870 2.60134 2.82627 3.13036 3.23374 3.61524 3.80773 3.91446 3.94670 4.12191 4.20970 4.32346 4.40444 4.50002 4.53930 4.57859 4.70897 4.74792 4.78042 4.98850 5.07129 5.09906 5.25902 5.26772 5.43276 5.43899 5.56394 5.62172 5.69731 5.79953 5.91834 6.17331 6.22717 6.74936 6.95903 7.33237 7.55413 8.88605 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002712 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.599495 B =10321.759340 C =10786.525649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.703 5.703 14 C 0.505 3.495 15 O -0.586 6.586 16 C -0.129 4.129 17 C 0.083 3.917 18 O -0.324 6.324 19 C 0.076 3.924 20 C -0.193 4.193 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.114 4.114 24 C 0.036 3.964 25 F -0.148 7.148 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 9.861 -13.541 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.352 5.352 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.168 4.168 17 C 0.008 3.992 18 O -0.238 6.238 19 C 0.030 3.970 20 C -0.212 4.212 21 C -0.104 4.104 22 C -0.141 4.141 23 C -0.133 4.133 24 C 0.017 3.983 25 F -0.127 7.127 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.187 0.813 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.460 9.726 -12.890 22.355 hybrid contribution 1.538 -0.311 0.267 1.592 sum -13.922 9.415 -12.623 21.019 Atomic orbital electron populations 1.21681 0.96853 0.99169 1.00364 1.21792 0.93880 0.99159 1.01286 1.18382 0.93581 0.89221 0.81416 0.98123 1.21623 0.91547 1.38756 1.06608 0.91072 1.25750 1.03169 0.94453 0.95103 1.70047 1.36932 1.38420 1.09909 0.85350 0.79342 0.77789 0.78171 1.18523 1.21072 1.20513 1.46237 1.15493 1.55788 1.17708 1.20683 0.81993 0.78592 0.89508 1.90672 1.52287 1.61376 1.42460 1.21405 0.96524 1.02840 0.96075 1.22388 0.95903 0.96805 0.84109 1.85993 1.29358 1.69895 1.38581 1.19324 0.85965 0.96859 0.94827 1.21476 0.96289 1.05507 0.97908 1.21458 0.94451 0.94932 0.99600 1.21381 1.01252 0.99905 0.91583 1.21377 0.90512 0.99441 1.01946 1.17435 0.91536 1.06443 0.82919 1.91454 1.72791 1.95076 1.53375 0.95431 0.93549 0.93694 0.94074 0.91102 0.92621 0.75974 0.86072 0.86316 0.91452 0.91240 0.84303 0.82369 0.81293 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 3 C 0.28 13.82 2.24 44.25 0.10 13.92 16 4 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.82 5.29 84.66 0.45 1.26 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.47 16 9 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 13 N -0.70 -27.55 5.02 -446.11 -2.24 -29.79 16 14 C 0.51 18.44 6.40 87.66 0.56 19.00 16 15 O -0.59 -25.75 13.12 -3.04 -0.04 -25.79 16 16 C -0.13 -3.36 6.07 29.85 0.18 -3.18 16 17 C 0.08 2.22 4.03 71.98 0.29 2.51 16 18 O -0.32 -8.95 10.00 -93.06 -0.93 -9.88 16 19 C 0.08 1.92 6.69 22.53 0.15 2.07 16 20 C -0.19 -4.06 9.04 22.36 0.20 -3.86 16 21 C -0.09 -1.29 10.04 22.26 0.22 -1.07 16 22 C -0.12 -1.53 10.04 22.28 0.22 -1.30 16 23 C -0.11 -1.81 10.02 22.29 0.22 -1.59 16 24 C 0.04 0.85 7.31 22.45 0.16 1.01 16 25 F -0.15 -3.93 17.11 44.97 0.77 -3.16 16 26 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 27 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 3.85 5.95 -2.38 -0.01 3.84 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.41 13.36 8.54 -92.71 -0.79 12.57 16 33 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 1.86 7.62 -2.39 -0.02 1.84 16 36 H 0.07 1.88 7.62 -2.39 -0.02 1.86 16 37 H 0.14 2.93 6.30 -2.91 -0.02 2.92 16 38 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -66.81 337.16 3.87 -62.95 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.27 Total: 23.31 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.77 Total: -9.88 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.00 Total: -81.27 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.97 Total: -35.67 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.77 Total: -3.16 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -66.81 3.87 -62.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183926188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.304 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds