Wall clock time and date at job start Tue Mar 31 2020 08:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47304 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.46726 * 55.00266 * 17 16 14 19 19 O 1.42894 * 109.47169 * 295.00396 * 17 16 14 20 20 C 1.50699 * 109.47406 * 175.00022 * 17 16 14 21 21 C 1.38267 * 119.98579 * 265.00784 * 20 17 16 22 22 C 1.38229 * 120.05202 * 180.02562 * 21 20 17 23 23 C 1.38225 * 120.02081 * 359.94843 * 22 21 20 24 24 C 1.38433 * 119.97630 * 0.02703 * 23 22 21 25 25 F 1.35102 * 120.02833 * 179.97438 * 24 23 22 26 26 C 1.38174 * 119.98682 * 84.72708 * 20 17 16 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 35 35 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 36 36 H 0.96697 * 114.00360 * 299.99440 * 19 17 16 37 37 H 1.07999 * 119.97601 * 359.97438 * 21 20 17 38 38 H 1.07991 * 119.98869 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00743 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.01424 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3824 3.8946 2.5211 18 1 -2.0598 3.0951 2.2207 19 8 -1.3974 4.9277 1.5340 20 6 -1.8275 4.4589 3.8457 21 6 -2.5696 3.6800 4.7143 22 6 -2.9790 4.1964 5.9294 23 6 -2.6460 5.4919 6.2778 24 6 -1.9026 6.2724 5.4092 25 9 -1.5770 7.5389 5.7484 26 6 -1.4889 5.7524 4.1941 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.0673 2.6129 3.4685 35 1 0.7277 4.1529 2.8680 36 1 -0.8161 5.6735 1.7363 37 1 -2.8302 2.6677 4.4429 38 1 -3.5589 3.5873 6.6069 39 1 -2.9656 5.8950 7.2274 40 1 -0.9051 6.3589 3.5177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183946521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:37 Heat of formation + Delta-G solvation = -119.156447 kcal Electronic energy + Delta-G solvation = -23436.775336 eV Core-core repulsion = 19744.536008 eV Total energy + Delta-G solvation = -3692.239328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.14108 -40.01020 -38.83106 -36.76295 -34.93091 -32.44819 -32.11732 -31.09110 -30.85911 -29.51972 -26.94136 -24.73114 -23.02310 -22.87284 -21.53486 -20.22064 -19.28719 -18.27061 -17.03684 -16.82298 -16.44898 -16.02550 -15.83277 -15.71463 -15.36221 -15.10070 -14.33724 -14.20184 -14.10042 -13.77048 -13.32151 -13.08502 -12.67355 -12.58727 -12.31705 -12.14791 -11.71324 -11.60428 -11.26762 -11.24868 -11.15076 -10.98900 -10.80547 -10.31283 -10.27701 -10.09199 -9.62697 -9.31823 -9.05319 -9.00452 -8.82259 -8.49168 -7.78008 -6.12042 -4.21480 0.83993 0.89213 3.23695 3.24538 3.30928 3.32790 3.45070 3.85709 4.06409 4.32663 4.41924 4.45211 4.54605 4.76396 4.83375 4.98629 5.04438 5.18097 5.21081 5.47303 5.59047 5.66048 5.76055 5.78425 5.85168 6.01017 6.25939 6.39458 6.45771 6.57754 6.66647 7.03819 7.21163 7.38257 7.49023 7.62754 7.65110 7.74653 7.91796 8.19412 8.70059 8.79347 9.18716 9.46374 10.93218 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.003156 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.754460 B = 8869.359049 C = 9384.891751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.533 6.533 16 C -0.174 4.174 17 C 0.166 3.834 18 H 0.119 0.881 19 O -0.534 6.534 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.158 4.158 24 C 0.100 3.900 25 F -0.140 7.140 26 C -0.147 4.147 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.366 0.634 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 7.303 16.576 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.284 3.716 15 O -0.411 6.411 16 C -0.215 4.215 17 C 0.106 3.894 18 H 0.137 0.863 19 O -0.338 6.338 20 C -0.083 4.083 21 C -0.138 4.138 22 C -0.106 4.106 23 C -0.177 4.177 24 C 0.081 3.919 25 F -0.119 7.119 26 C -0.166 4.166 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.213 0.787 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.784 6.820 15.403 20.002 hybrid contribution 1.862 0.556 0.784 2.095 sum -8.923 7.376 16.187 19.900 Atomic orbital electron populations 1.21835 0.98359 0.97947 1.01229 1.21931 0.92607 0.99909 1.02182 1.18753 0.94071 0.89119 0.81150 0.93332 1.21242 0.90827 1.38972 1.06234 0.92186 1.24892 0.98553 0.94862 0.95403 1.69897 1.35087 1.37619 1.09323 0.86469 0.84962 0.78403 0.77384 1.20577 1.21076 1.19897 1.46499 1.14742 1.56301 1.18476 1.20088 0.83007 0.79645 0.88831 1.90717 1.51227 1.58971 1.40135 1.22475 0.97913 1.02291 0.98784 1.20563 0.95471 0.90224 0.83113 0.86347 1.86798 1.68490 1.31773 1.46725 1.20630 0.96697 0.93590 0.97338 1.21131 0.98254 1.00481 0.93966 1.21024 0.98606 0.94446 0.96532 1.21161 1.00977 0.95222 1.00371 1.17652 0.99427 0.79892 0.94900 1.91508 1.90983 1.36962 1.92454 1.20891 1.02984 0.96638 0.96077 0.93109 0.94347 0.95938 0.95152 0.88367 0.92577 0.78186 0.88534 0.89130 0.78711 0.84880 0.84820 0.84819 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.74 -0.15 -3.21 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.63 11.30 55.43 0.63 -24.00 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.14 5.02 -54.94 -0.28 -14.42 16 14 C 0.50 9.25 6.28 -10.99 -0.07 9.18 16 15 O -0.53 -11.96 12.56 -8.82 -0.11 -12.07 16 16 C -0.17 -2.21 5.36 -27.88 -0.15 -2.36 16 17 C 0.17 2.08 2.76 -27.88 -0.08 2.00 16 18 H 0.12 1.62 7.86 -51.93 -0.41 1.21 16 19 O -0.53 -7.63 12.37 -49.61 -0.61 -8.25 16 20 C -0.08 -0.85 5.00 -104.64 -0.52 -1.37 16 21 C -0.12 -1.07 9.68 -39.57 -0.38 -1.45 16 22 C -0.09 -0.68 10.04 -39.59 -0.40 -1.08 16 23 C -0.16 -1.35 10.03 -39.51 -0.40 -1.74 16 24 C 0.10 1.01 7.30 -39.42 -0.29 0.73 16 25 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 26 C -0.15 -1.47 9.31 -39.51 -0.37 -1.84 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.65 8.54 -40.82 -0.35 6.30 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.37 3.87 7.40 45.56 0.34 4.21 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.16 6.62 -52.49 -0.35 0.81 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -31.62 335.58 -8.00 -39.62 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.67 Total: 9.95 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.03 Total: -9.87 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.35 Total: -38.42 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.72 Total: -20.31 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.62 -8.00 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183946521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.537 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds