Wall clock time and date at job start Tue Mar 31 2020 08:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47304 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.46726 * 55.00266 * 17 16 14 19 19 O 1.42894 * 109.47169 * 295.00396 * 17 16 14 20 20 C 1.50699 * 109.47406 * 175.00022 * 17 16 14 21 21 C 1.38267 * 119.98579 * 265.00784 * 20 17 16 22 22 C 1.38229 * 120.05202 * 180.02562 * 21 20 17 23 23 C 1.38225 * 120.02081 * 359.94843 * 22 21 20 24 24 C 1.38433 * 119.97630 * 0.02703 * 23 22 21 25 25 F 1.35102 * 120.02833 * 179.97438 * 24 23 22 26 26 C 1.38174 * 119.98682 * 84.72708 * 20 17 16 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 35 35 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 36 36 H 0.96697 * 114.00360 * 299.99440 * 19 17 16 37 37 H 1.07999 * 119.97601 * 359.97438 * 21 20 17 38 38 H 1.07991 * 119.98869 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00743 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.01424 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3824 3.8946 2.5211 18 1 -2.0598 3.0951 2.2207 19 8 -1.3974 4.9277 1.5340 20 6 -1.8275 4.4589 3.8457 21 6 -2.5696 3.6800 4.7143 22 6 -2.9790 4.1964 5.9294 23 6 -2.6460 5.4919 6.2778 24 6 -1.9026 6.2724 5.4092 25 9 -1.5770 7.5389 5.7484 26 6 -1.4889 5.7524 4.1941 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.0673 2.6129 3.4685 35 1 0.7277 4.1529 2.8680 36 1 -0.8161 5.6735 1.7363 37 1 -2.8302 2.6677 4.4429 38 1 -3.5589 3.5873 6.6069 39 1 -2.9656 5.8950 7.2274 40 1 -0.9051 6.3589 3.5177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183946521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:36 Heat of formation + Delta-G solvation = -140.061031 kcal Electronic energy + Delta-G solvation = -23437.681827 eV Core-core repulsion = 19744.536008 eV Total energy + Delta-G solvation = -3693.145819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90153 -41.06740 -40.07477 -37.83018 -36.70664 -34.25500 -33.27586 -32.63845 -31.59299 -30.61663 -28.79048 -25.84738 -24.75295 -23.62616 -22.51553 -21.79752 -20.99839 -19.31025 -18.57281 -17.67186 -17.32079 -17.25953 -17.08200 -16.75497 -16.59784 -16.54255 -15.93366 -15.35679 -15.10705 -14.73387 -14.63605 -14.50484 -14.13640 -13.76086 -13.50560 -13.36503 -13.14296 -12.90890 -12.82698 -12.72192 -12.59529 -12.34896 -12.16019 -12.05983 -12.02518 -11.56058 -11.17370 -11.01634 -10.59486 -10.45216 -9.94427 -9.65790 -9.53616 -8.14710 -6.31998 0.13876 0.22324 1.44687 1.45477 1.55659 1.98826 2.36843 2.53092 2.74010 3.14450 3.21825 3.53262 3.61877 3.77665 3.86187 4.08323 4.20277 4.22693 4.41497 4.47894 4.52355 4.60532 4.66981 4.79667 4.83381 4.85770 5.09389 5.09786 5.15488 5.29607 5.35538 5.47410 5.50788 5.59044 5.68943 5.83626 5.91382 5.97966 6.20814 6.77614 6.78433 7.09355 7.36224 7.71295 8.90418 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.003156 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.754460 B = 8869.359049 C = 9384.891751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.710 5.710 14 C 0.496 3.504 15 O -0.576 6.576 16 C -0.158 4.158 17 C 0.171 3.829 18 H 0.102 0.898 19 O -0.561 6.561 20 C -0.090 4.090 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.155 4.155 24 C 0.080 3.920 25 F -0.150 7.150 26 C -0.154 4.154 27 H 0.022 0.978 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.379 0.621 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 7.328 19.400 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.456 6.456 16 C -0.198 4.198 17 C 0.111 3.889 18 H 0.120 0.880 19 O -0.368 6.368 20 C -0.090 4.090 21 C -0.141 4.141 22 C -0.101 4.101 23 C -0.174 4.174 24 C 0.061 3.939 25 F -0.128 7.128 26 C -0.172 4.172 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.228 0.772 37 H 0.165 0.835 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.531 6.865 18.279 22.185 hybrid contribution 1.710 0.579 -0.084 1.807 sum -8.821 7.444 18.196 21.548 Atomic orbital electron populations 1.21670 0.96885 0.99059 1.00327 1.21774 0.93835 0.99243 1.01138 1.18296 0.93374 0.89135 0.81690 0.98769 1.21613 0.91672 1.38719 1.06575 0.91107 1.25779 1.03225 0.94504 0.95097 1.70059 1.36998 1.38479 1.09864 0.85394 0.79284 0.78858 0.77080 1.19666 1.21414 1.18912 1.46280 1.15907 1.56460 1.17353 1.21061 0.81722 0.78604 0.90329 1.90706 1.52289 1.60311 1.42325 1.22424 0.98530 1.03090 0.95750 1.20443 0.94924 0.89598 0.83921 0.88033 1.86751 1.69215 1.32768 1.48075 1.20353 0.98188 0.93975 0.96502 1.21397 0.97502 1.01055 0.94103 1.21361 0.98021 0.94317 0.96386 1.21484 0.99817 0.95334 1.00766 1.17880 1.00588 0.79926 0.95528 1.91483 1.91222 1.37595 1.92535 1.20983 1.03205 0.96692 0.96367 0.95879 0.93324 0.93679 0.94026 0.91354 0.92694 0.76342 0.85557 0.86750 0.77176 0.83495 0.81778 0.82862 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.13 2.24 44.24 0.10 14.23 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -28.75 8.73 25.60 0.22 -28.53 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.75 5.29 84.65 0.45 1.19 16 8 N -0.92 -52.57 11.30 21.45 0.24 -52.33 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 13 N -0.71 -27.93 5.02 -446.11 -2.24 -30.17 16 14 C 0.50 18.14 6.28 87.66 0.55 18.69 16 15 O -0.58 -26.49 12.56 10.73 0.13 -26.36 16 16 C -0.16 -3.69 5.36 29.85 0.16 -3.52 16 17 C 0.17 4.09 2.76 29.85 0.08 4.17 16 18 H 0.10 2.75 7.86 -2.38 -0.02 2.73 16 19 O -0.56 -16.00 12.37 -135.23 -1.67 -17.68 16 20 C -0.09 -1.68 5.00 -19.87 -0.10 -1.78 16 21 C -0.12 -1.85 9.68 22.27 0.22 -1.63 16 22 C -0.08 -1.00 10.04 22.26 0.22 -0.78 16 23 C -0.16 -2.20 10.03 22.31 0.22 -1.98 16 24 C 0.08 1.47 7.30 22.38 0.16 1.64 16 25 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 26 C -0.15 -2.84 9.31 22.31 0.21 -2.64 16 27 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 28 H 0.05 2.03 5.64 -2.39 -0.01 2.01 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 3.77 5.95 -2.39 -0.01 3.76 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.40 13.19 8.54 -92.71 -0.79 12.40 16 34 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.38 7.90 7.40 -74.06 -0.55 7.35 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.14 2.27 6.62 -2.91 -0.02 2.25 16 Total: -1.00 -70.87 335.58 2.28 -68.59 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.26 Total: 27.75 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 3.28 Total: -11.49 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.00 Total: -82.50 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.54 Total: -44.03 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -70.87 2.28 -68.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183946521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.470 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds