Wall clock time and date at job start Tue Mar 31 2020 08:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09007 * 109.46875 * 54.99728 * 3 2 1 5 5 C 1.50691 * 109.47283 * 174.99867 * 3 2 1 6 6 H 1.07997 * 119.99993 * 120.00064 * 5 3 2 7 7 C 1.37878 * 120.00443 * 300.00247 * 5 3 2 8 8 N 1.31513 * 120.00649 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99700 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46881 * 90.00111 * 9 7 5 11 11 H 1.48492 * 109.47208 * 210.00249 * 9 7 5 12 12 H 1.48503 * 109.47005 * 330.00516 * 9 7 5 13 13 N 1.46499 * 109.47022 * 295.00144 * 3 2 1 14 14 C 1.34784 * 119.99971 * 84.99732 * 13 3 2 15 15 O 1.21274 * 119.99897 * 359.72827 * 14 13 3 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47004 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47152 * 305.00663 * 17 16 14 19 19 O 1.42904 * 109.47122 * 64.99822 * 17 16 14 20 20 C 1.50699 * 109.47352 * 185.00095 * 17 16 14 21 21 C 1.38270 * 119.98402 * 279.72452 * 20 17 16 22 22 C 1.38231 * 120.04633 * 179.72255 * 21 20 17 23 23 C 1.38220 * 120.02201 * 0.55265 * 22 21 20 24 24 C 1.38428 * 119.97758 * 359.72559 * 23 22 21 25 25 F 1.35100 * 120.02600 * 180.02562 * 24 23 22 26 26 C 1.38179 * 119.98795 * 100.00184 * 20 17 16 27 27 H 1.08997 * 109.46933 * 300.00069 * 1 2 3 28 28 H 1.08994 * 109.46985 * 59.99445 * 1 2 3 29 29 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46933 * 239.99931 * 2 1 3 31 31 H 1.09002 * 109.46704 * 120.00428 * 2 1 3 32 32 H 0.96997 * 120.00259 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99984 * 264.99579 * 13 3 2 34 34 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 35 35 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 36 36 H 0.96698 * 113.99744 * 60.00275 * 19 17 16 37 37 H 1.08001 * 119.97595 * 359.97438 * 21 20 17 38 38 H 1.07998 * 119.98678 * 180.27841 * 22 21 20 39 39 H 1.08000 * 120.00838 * 179.70142 * 23 22 21 40 40 H 1.07997 * 120.01042 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4441 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1434 0.8782 1.2280 8 7 5.4540 0.8801 1.3363 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3262 2.2645 11 1 3.7941 0.2357 3.8755 12 1 1.7881 0.8092 2.6394 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6280 -0.4359 16 6 0.0369 3.3386 -2.6544 17 6 -1.3824 3.8943 -2.5212 18 1 -2.0593 3.0941 -2.2220 19 8 -1.3991 4.9265 -1.5329 20 6 -1.8270 4.4596 -3.8455 21 6 -1.4124 5.7205 -4.2328 22 6 -1.8148 6.2380 -5.4498 23 6 -2.6414 5.4998 -6.2758 24 6 -3.0617 4.2397 -5.8865 25 9 -3.8693 3.5172 -6.6934 26 6 -2.6535 3.7199 -4.6697 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8770 0.4823 2.1133 33 1 2.2721 2.1231 -1.9977 34 1 0.7283 4.1541 -2.8666 35 1 0.0682 2.6146 -3.4686 36 1 -0.8181 5.6729 -1.7341 37 1 -0.7705 6.2999 -3.5858 38 1 -1.4867 7.2211 -5.7533 39 1 -2.9596 5.9063 -7.2245 40 1 -2.9811 2.7371 -4.3647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183946540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:39 Heat of formation + Delta-G solvation = -111.284613 kcal Electronic energy + Delta-G solvation = -23510.413914 eV Core-core repulsion = 19818.515934 eV Total energy + Delta-G solvation = -3691.897980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.16773 -40.09992 -39.01021 -36.84789 -35.19146 -32.54395 -32.27257 -31.59185 -30.76763 -29.69676 -27.45204 -24.79405 -23.12522 -22.66495 -21.60863 -20.60016 -19.55702 -18.28398 -17.24406 -16.79819 -16.51564 -16.29633 -15.85932 -15.78710 -15.59560 -15.39917 -14.54749 -14.15745 -14.05750 -13.91817 -13.43226 -13.23884 -12.98699 -12.62669 -12.50064 -12.20981 -12.00053 -11.88111 -11.80887 -11.48903 -11.14664 -11.06499 -10.87841 -10.63456 -10.26425 -9.92313 -9.55982 -9.35970 -9.22623 -9.10019 -8.92728 -8.75309 -8.03603 -6.21812 -4.24213 0.79246 0.85813 3.20108 3.22875 3.27512 3.35541 3.41041 3.75951 3.98866 4.31313 4.34525 4.42301 4.47507 4.69628 4.74994 4.86776 5.05843 5.07846 5.12540 5.40878 5.51294 5.61411 5.62537 5.73612 5.79104 5.96028 5.97015 6.02806 6.18594 6.20325 6.53734 6.65692 6.70602 6.85357 6.96025 7.27763 7.32318 7.52929 7.58522 8.15863 8.54186 8.75742 8.98344 9.39589 10.90266 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029528 B = 0.003215 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.033741 B = 8708.066069 C = 8954.865732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.534 6.534 16 C -0.173 4.173 17 C 0.166 3.834 18 H 0.116 0.884 19 O -0.533 6.533 20 C -0.083 4.083 21 C -0.123 4.123 22 C -0.087 4.087 23 C -0.157 4.157 24 C 0.100 3.900 25 F -0.140 7.140 26 C -0.143 4.143 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.393 0.607 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.367 0.633 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 8.587 -14.883 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.352 5.352 14 C 0.287 3.713 15 O -0.412 6.412 16 C -0.214 4.214 17 C 0.106 3.894 18 H 0.134 0.866 19 O -0.337 6.337 20 C -0.084 4.084 21 C -0.141 4.141 22 C -0.105 4.105 23 C -0.176 4.176 24 C 0.081 3.919 25 F -0.119 7.119 26 C -0.162 4.162 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.226 0.774 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.214 0.786 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.596 8.068 -13.818 21.658 hybrid contribution 0.280 -0.325 -0.246 0.494 sum -14.316 7.742 -14.064 21.510 Atomic orbital electron populations 1.21871 0.96944 0.98956 1.02265 1.22285 0.94354 1.00054 1.01023 1.19119 0.95497 0.88440 0.83000 0.93334 1.21060 0.88709 1.39744 1.07791 0.90282 1.24840 0.94861 0.95150 0.97692 1.69865 1.08710 1.44571 1.29841 0.86900 0.81008 0.79936 0.80880 1.20270 1.22184 1.18409 1.46174 1.14996 1.56173 1.17897 1.20162 0.82742 0.79440 0.88991 1.90714 1.51195 1.59002 1.40283 1.22457 0.98046 1.02460 0.98411 1.20531 0.95328 0.90262 0.83242 0.86593 1.86803 1.68580 1.31807 1.46547 1.20579 0.96153 0.94701 0.96933 1.21012 1.00767 0.95432 0.96862 1.20994 0.96222 0.99749 0.93533 1.21169 1.00889 0.93784 1.01768 1.17688 0.93519 0.90941 0.89798 1.91509 1.70735 1.77357 1.72268 1.21024 1.00062 1.01645 0.93493 0.92831 0.92986 0.95055 0.92394 0.92849 0.92292 0.77387 0.88752 0.88356 0.78613 0.85229 0.84804 0.84776 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.14 -3.04 5.11 -26.73 -0.14 -3.18 16 3 C 0.24 5.65 1.83 -69.09 -0.13 5.52 16 4 H 0.05 1.26 6.64 -51.92 -0.34 0.92 16 5 C -0.54 -14.27 9.31 -34.44 -0.32 -14.59 16 6 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 9 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.28 -6.59 6.83 56.52 0.39 -6.20 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16 13 N -0.70 -13.22 5.02 -54.94 -0.28 -13.50 16 14 C 0.50 8.66 6.29 -10.98 -0.07 8.59 16 15 O -0.53 -11.18 12.54 -8.75 -0.11 -11.29 16 16 C -0.17 -2.03 5.36 -27.88 -0.15 -2.18 16 17 C 0.17 1.94 2.75 -27.88 -0.08 1.86 16 18 H 0.12 1.52 7.81 -51.93 -0.41 1.11 16 19 O -0.53 -7.00 12.42 -49.55 -0.62 -7.62 16 20 C -0.08 -0.81 4.97 -104.63 -0.52 -1.33 16 21 C -0.12 -0.99 9.32 -39.57 -0.37 -1.36 16 22 C -0.09 -0.63 10.04 -39.59 -0.40 -1.03 16 23 C -0.16 -1.28 10.03 -39.52 -0.40 -1.68 16 24 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 25 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 26 C -0.14 -1.41 9.65 -39.52 -0.38 -1.80 16 27 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 28 H 0.05 0.99 5.64 -51.93 -0.29 0.70 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.24 3.22 -51.93 -0.17 1.08 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.39 6.49 8.54 -40.82 -0.35 6.14 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.37 3.36 7.49 45.56 0.34 3.70 16 37 H 0.13 0.78 6.77 -52.49 -0.36 0.42 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 1.24 8.04 -52.49 -0.42 0.81 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -32.81 328.98 -6.93 -39.74 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.54 Total: 8.04 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.01 Total: -10.91 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.50 Total: -39.05 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.73 Total: -18.91 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.81 -6.93 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183946540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.546 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds