Wall clock time and date at job start Tue Mar 31 2020 08:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09007 * 109.46875 * 54.99728 * 3 2 1 5 5 C 1.50691 * 109.47283 * 174.99867 * 3 2 1 6 6 H 1.07997 * 119.99993 * 120.00064 * 5 3 2 7 7 C 1.37878 * 120.00443 * 300.00247 * 5 3 2 8 8 N 1.31513 * 120.00649 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99700 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46881 * 90.00111 * 9 7 5 11 11 H 1.48492 * 109.47208 * 210.00249 * 9 7 5 12 12 H 1.48503 * 109.47005 * 330.00516 * 9 7 5 13 13 N 1.46499 * 109.47022 * 295.00144 * 3 2 1 14 14 C 1.34784 * 119.99971 * 84.99732 * 13 3 2 15 15 O 1.21274 * 119.99897 * 359.72827 * 14 13 3 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47004 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47152 * 305.00663 * 17 16 14 19 19 O 1.42904 * 109.47122 * 64.99822 * 17 16 14 20 20 C 1.50699 * 109.47352 * 185.00095 * 17 16 14 21 21 C 1.38270 * 119.98402 * 279.72452 * 20 17 16 22 22 C 1.38231 * 120.04633 * 179.72255 * 21 20 17 23 23 C 1.38220 * 120.02201 * 0.55265 * 22 21 20 24 24 C 1.38428 * 119.97758 * 359.72559 * 23 22 21 25 25 F 1.35100 * 120.02600 * 180.02562 * 24 23 22 26 26 C 1.38179 * 119.98795 * 100.00184 * 20 17 16 27 27 H 1.08997 * 109.46933 * 300.00069 * 1 2 3 28 28 H 1.08994 * 109.46985 * 59.99445 * 1 2 3 29 29 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46933 * 239.99931 * 2 1 3 31 31 H 1.09002 * 109.46704 * 120.00428 * 2 1 3 32 32 H 0.96997 * 120.00259 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99984 * 264.99579 * 13 3 2 34 34 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 35 35 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 36 36 H 0.96698 * 113.99744 * 60.00275 * 19 17 16 37 37 H 1.08001 * 119.97595 * 359.97438 * 21 20 17 38 38 H 1.07998 * 119.98678 * 180.27841 * 22 21 20 39 39 H 1.08000 * 120.00838 * 179.70142 * 23 22 21 40 40 H 1.07997 * 120.01042 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4441 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1434 0.8782 1.2280 8 7 5.4540 0.8801 1.3363 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3262 2.2645 11 1 3.7941 0.2357 3.8755 12 1 1.7881 0.8092 2.6394 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6280 -0.4359 16 6 0.0369 3.3386 -2.6544 17 6 -1.3824 3.8943 -2.5212 18 1 -2.0593 3.0941 -2.2220 19 8 -1.3991 4.9265 -1.5329 20 6 -1.8270 4.4596 -3.8455 21 6 -1.4124 5.7205 -4.2328 22 6 -1.8148 6.2380 -5.4498 23 6 -2.6414 5.4998 -6.2758 24 6 -3.0617 4.2397 -5.8865 25 9 -3.8693 3.5172 -6.6934 26 6 -2.6535 3.7199 -4.6697 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8770 0.4823 2.1133 33 1 2.2721 2.1231 -1.9977 34 1 0.7283 4.1541 -2.8666 35 1 0.0682 2.6146 -3.4686 36 1 -0.8181 5.6729 -1.7341 37 1 -0.7705 6.2999 -3.5858 38 1 -1.4867 7.2211 -5.7533 39 1 -2.9596 5.9063 -7.2245 40 1 -2.9811 2.7371 -4.3647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183946540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:39 Heat of formation + Delta-G solvation = -134.547917 kcal Electronic energy + Delta-G solvation = -23511.422686 eV Core-core repulsion = 19818.515934 eV Total energy + Delta-G solvation = -3692.906753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90949 -41.12956 -40.14279 -37.85810 -36.83364 -34.36868 -33.52785 -32.92290 -31.45890 -30.69503 -29.25228 -25.80281 -24.47009 -23.75935 -22.68875 -21.92793 -21.12134 -19.37027 -18.70444 -17.71976 -17.63811 -17.26854 -17.09211 -16.93665 -16.60907 -16.58480 -15.88591 -15.58864 -15.09581 -15.00752 -14.65281 -14.60679 -14.19114 -13.95150 -13.73934 -13.63215 -13.34419 -13.03273 -12.81756 -12.76196 -12.59743 -12.57605 -12.36374 -11.94363 -11.84835 -11.37115 -11.23439 -11.14859 -10.85530 -10.57272 -9.95421 -9.67995 -9.66601 -8.37967 -6.42673 0.13437 0.22014 1.26362 1.34934 1.44708 1.91208 2.25990 2.44758 2.64567 2.98237 3.19296 3.56093 3.61126 3.79903 3.84660 4.08979 4.13026 4.21754 4.25326 4.32523 4.38558 4.44148 4.53219 4.68853 4.78174 4.87443 4.90580 5.02176 5.08810 5.14519 5.15509 5.24848 5.35616 5.44042 5.49382 5.53803 5.73535 5.91077 6.17064 6.60126 6.84625 6.98310 7.21655 7.59430 8.77206 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029528 B = 0.003215 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.033741 B = 8708.066069 C = 8954.865732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.572 6.572 16 C -0.159 4.159 17 C 0.173 3.827 18 H 0.095 0.905 19 O -0.558 6.558 20 C -0.090 4.090 21 C -0.121 4.121 22 C -0.083 4.083 23 C -0.155 4.155 24 C 0.078 3.922 25 F -0.151 7.151 26 C -0.155 4.155 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.269 0.731 33 H 0.405 0.595 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.383 0.617 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 9.444 -16.398 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.037 0.963 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.187 1.187 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.452 6.452 16 C -0.199 4.199 17 C 0.113 3.887 18 H 0.112 0.888 19 O -0.365 6.365 20 C -0.090 4.090 21 C -0.139 4.139 22 C -0.100 4.100 23 C -0.174 4.174 24 C 0.059 3.941 25 F -0.129 7.129 26 C -0.174 4.174 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.232 0.768 37 H 0.170 0.830 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.511 8.936 -15.374 23.597 hybrid contribution 0.563 -0.485 0.161 0.760 sum -14.948 8.451 -15.213 22.941 Atomic orbital electron populations 1.21754 0.95225 1.00397 1.01626 1.22207 0.95818 0.98704 1.00872 1.18714 0.92971 0.89536 0.84275 0.96296 1.21325 0.90517 1.38275 1.06814 0.92436 1.25532 0.95674 0.95974 0.99840 1.69970 1.10217 1.46303 1.30851 0.86056 0.79298 0.79908 0.78459 1.18691 1.22157 1.18679 1.46032 1.16182 1.56500 1.16768 1.21055 0.81389 0.78384 0.90418 1.90703 1.52055 1.60158 1.42234 1.22429 0.98638 1.03331 0.95475 1.20347 0.94723 0.89686 0.83970 0.88750 1.86763 1.69377 1.32775 1.47589 1.20335 0.97146 0.95624 0.95918 1.21332 1.00430 0.94700 0.97439 1.21360 0.95179 1.00740 0.92767 1.21488 1.00298 0.92983 1.02624 1.17919 0.94347 0.91857 0.90001 1.91478 1.71178 1.77766 1.72522 1.21096 1.00476 1.01946 0.93848 0.94706 0.92419 0.92499 0.91317 0.94135 0.92135 0.75977 0.85934 0.85975 0.76774 0.83002 0.81732 0.82944 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.51 71.98 0.61 -4.48 16 2 C -0.14 -5.88 5.11 30.59 0.16 -5.73 16 3 C 0.25 11.59 1.83 44.24 0.08 11.67 16 4 H 0.02 1.01 6.64 -2.38 -0.02 0.99 16 5 C -0.53 -28.59 9.31 25.60 0.24 -28.35 16 6 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.66 5.45 84.66 0.46 2.12 16 8 N -0.93 -55.89 13.96 21.45 0.30 -55.59 16 9 Si 0.94 45.07 24.41 68.60 1.67 46.75 16 10 H -0.26 -11.87 6.83 99.48 0.68 -11.19 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.26 -12.63 6.53 99.48 0.65 -11.98 16 13 N -0.70 -25.80 5.02 -446.11 -2.24 -28.04 16 14 C 0.50 16.64 6.29 87.65 0.55 17.19 16 15 O -0.57 -23.74 12.54 10.68 0.13 -23.60 16 16 C -0.16 -3.33 5.36 29.85 0.16 -3.17 16 17 C 0.17 3.77 2.75 29.85 0.08 3.85 16 18 H 0.09 2.45 7.81 -2.39 -0.02 2.43 16 19 O -0.56 -13.88 12.42 -135.29 -1.68 -15.56 16 20 C -0.09 -1.56 4.97 -19.87 -0.10 -1.66 16 21 C -0.12 -1.55 9.32 22.28 0.21 -1.34 16 22 C -0.08 -0.89 10.04 22.26 0.22 -0.67 16 23 C -0.16 -2.11 10.03 22.31 0.22 -1.89 16 24 C 0.08 1.43 7.30 22.37 0.16 1.59 16 25 F -0.15 -3.13 17.27 44.97 0.78 -2.35 16 26 C -0.15 -2.88 9.65 22.31 0.22 -2.67 16 27 H 0.03 1.44 7.84 -2.39 -0.02 1.43 16 28 H 0.06 2.12 5.64 -2.39 -0.01 2.11 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.04 1.83 3.22 -2.39 -0.01 1.83 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.41 12.82 8.54 -92.71 -0.79 12.03 16 34 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.38 6.14 7.49 -74.06 -0.56 5.58 16 37 H 0.15 1.21 6.77 -2.91 -0.02 1.19 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.14 2.43 8.04 -2.91 -0.02 2.41 16 Total: -1.00 -72.03 328.98 1.89 -70.13 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.35 Total: 21.81 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 3.28 Total: -13.54 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.94 Total: -83.63 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.55 Total: -39.17 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.75 kcal Total: -72.03 1.89 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183946540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.415 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds