Wall clock time and date at job start Tue Mar 31 2020 08:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 H 1.09010 * 109.46997 * 304.99684 * 3 2 1 5 5 C 1.50701 * 109.47373 * 185.00063 * 3 2 1 6 6 H 1.08006 * 119.99942 * 239.99994 * 5 3 2 7 7 C 1.37879 * 120.00091 * 59.99195 * 5 3 2 8 8 N 1.31507 * 120.00043 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46945 * 119.99944 * 9 7 5 12 12 H 1.48500 * 109.47191 * 240.00359 * 9 7 5 13 13 N 1.46493 * 109.47359 * 64.99621 * 3 2 1 14 14 C 1.34780 * 120.00102 * 274.72683 * 13 3 2 15 15 O 1.21280 * 119.99890 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00029 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.46981 * 304.99380 * 16 14 13 18 18 C 1.52999 * 109.47357 * 64.99821 * 16 14 13 19 19 O 1.42908 * 109.47032 * 184.99941 * 16 14 13 20 20 C 1.35895 * 116.99898 * 155.32407 * 19 16 14 21 21 C 1.38773 * 120.04059 * 185.35749 * 20 19 16 22 22 C 1.38130 * 119.99335 * 179.97438 * 21 20 19 23 23 C 1.38254 * 120.08132 * 359.97438 * 22 21 20 24 24 C 1.38471 * 120.08367 * 0.03821 * 23 22 21 25 25 F 1.35105 * 119.99527 * 179.97438 * 24 23 22 26 26 C 1.38389 * 120.00792 * 359.70289 * 24 23 22 27 27 H 1.08997 * 109.47455 * 300.00554 * 1 2 3 28 28 H 1.09002 * 109.47308 * 60.00601 * 1 2 3 29 29 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47455 * 239.99446 * 2 1 3 31 31 H 1.09002 * 109.47308 * 119.99399 * 2 1 3 32 32 H 0.96999 * 120.00238 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00116 * 95.00697 * 13 3 2 34 34 H 1.09003 * 109.47094 * 60.00159 * 18 16 14 35 35 H 1.09005 * 109.46911 * 180.02562 * 18 16 14 36 36 H 1.08992 * 109.47190 * 300.00062 * 18 16 14 37 37 H 1.07995 * 120.00321 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.95851 * 180.02562 * 22 21 20 39 39 H 1.07999 * 119.95532 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.04101 * 180.27618 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5443 -0.1931 11 1 6.4962 -0.5190 -1.4624 12 1 6.4000 1.6156 -2.6091 13 7 1.6524 2.0975 1.2517 14 6 0.4371 2.6693 1.3649 15 8 -0.3354 2.6419 0.4303 16 6 0.0386 3.3436 2.6523 17 1 0.1504 2.6425 3.4794 18 6 0.9358 4.5600 2.8899 19 8 -1.3239 3.7661 2.5669 20 6 -1.9996 3.9104 3.7371 21 6 -3.3547 4.2092 3.7245 22 6 -4.0406 4.3552 4.9146 23 6 -3.3789 4.2036 6.1189 24 6 -2.0267 3.9057 6.1353 25 9 -1.3817 3.7584 7.3133 26 6 -1.3372 3.7533 4.9451 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8293 -0.0606 -2.9501 33 1 2.2718 2.1233 1.9977 34 1 0.8239 5.2611 2.0628 35 1 0.6478 5.0474 3.8214 36 1 1.9749 4.2378 2.9551 37 1 -3.8731 4.3268 2.7845 38 1 -5.0953 4.5874 4.9042 39 1 -3.9173 4.3178 7.0482 40 1 -0.2835 3.5166 4.9573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183957112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:15 Heat of formation + Delta-G solvation = -100.151200 kcal Electronic energy + Delta-G solvation = -23677.101126 eV Core-core repulsion = 19985.685927 eV Total energy + Delta-G solvation = -3691.415199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.11357 -40.57237 -38.99188 -37.29136 -35.05647 -32.87706 -31.95214 -30.92584 -30.57600 -29.67880 -27.05417 -24.74346 -23.34914 -22.85369 -22.37361 -20.32493 -19.41497 -18.74949 -17.69002 -16.65263 -16.37674 -16.14045 -15.94186 -15.59532 -15.47437 -15.15590 -14.53644 -14.33607 -14.19909 -13.80165 -13.36097 -13.10688 -12.73343 -12.56266 -12.40158 -12.09952 -11.92093 -11.67660 -11.55524 -11.32979 -11.29421 -11.03321 -10.97446 -10.85904 -10.34772 -10.23796 -9.67608 -9.19712 -9.10823 -9.01300 -8.55586 -8.41948 -7.92850 -6.17193 -4.27063 0.91710 1.07265 2.79161 3.18949 3.20850 3.28992 3.31113 3.39324 3.98469 4.04486 4.31851 4.52910 4.65206 4.76598 4.85482 4.95483 5.07053 5.13989 5.17205 5.30192 5.54393 5.58886 5.80063 5.83320 5.99546 6.06263 6.10053 6.35374 6.41281 6.48472 6.61311 6.98758 7.11823 7.21105 7.30116 7.35549 7.56593 7.66585 7.83768 8.12152 8.54055 8.70975 9.00070 9.40214 10.88160 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.003337 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.360223 B = 8389.536767 C = 8858.282955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.524 6.524 16 C 0.060 3.940 17 H 0.093 0.907 18 C -0.175 4.175 19 O -0.275 6.275 20 C 0.168 3.832 21 C -0.162 4.162 22 C -0.051 4.051 23 C -0.199 4.199 24 C 0.138 3.862 25 F -0.138 7.138 26 C -0.253 4.253 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 6.940 15.104 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.400 6.400 16 C 0.000 4.000 17 H 0.111 0.889 18 C -0.232 4.232 19 O -0.186 6.186 20 C 0.121 3.879 21 C -0.181 4.181 22 C -0.070 4.070 23 C -0.218 4.218 24 C 0.119 3.881 25 F -0.117 7.117 26 C -0.273 4.273 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.287 6.828 14.043 18.699 hybrid contribution 1.625 -0.150 0.692 1.773 sum -8.662 6.678 14.734 18.351 Atomic orbital electron populations 1.21843 0.98318 0.98195 1.01199 1.21952 0.92617 0.99727 1.02426 1.18847 0.94338 0.89165 0.80584 0.93115 1.21243 0.90526 1.39190 1.06399 0.91965 1.24885 0.98668 0.94743 0.95354 1.69897 1.35105 1.37492 1.09308 0.86393 0.84754 0.77808 0.78144 1.19735 1.20854 1.20855 1.46421 1.14040 1.55754 1.18926 1.19729 0.83485 0.79848 0.88032 1.90717 1.51104 1.58710 1.39512 1.22477 0.80685 0.97578 0.99238 0.88924 1.22318 0.99878 0.97619 1.03401 1.86291 1.24488 1.81094 1.26755 1.18869 0.91694 0.92878 0.84472 1.20578 0.91388 1.06314 0.99797 1.20802 0.99908 0.95715 0.90525 1.21021 0.92903 1.08046 0.99862 1.17387 0.90641 0.99617 0.80477 1.91507 1.81833 1.93039 1.45308 1.21276 1.02158 1.12517 0.91302 0.94466 0.93064 0.95695 0.88126 0.94941 0.92537 0.77901 0.90484 0.91255 0.89829 0.84238 0.84301 0.84763 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.62 2.24 -69.09 -0.15 6.46 16 4 H 0.05 1.44 7.57 -51.92 -0.39 1.05 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -13.79 4.98 -54.93 -0.27 -14.06 16 14 C 0.51 9.77 5.75 -10.99 -0.06 9.71 16 15 O -0.52 -12.28 13.68 -14.30 -0.20 -12.47 16 16 C 0.06 0.88 2.64 -27.89 -0.07 0.80 16 17 H 0.09 1.15 6.31 -51.93 -0.33 0.82 16 18 C -0.17 -2.09 9.12 37.16 0.34 -1.75 16 19 O -0.27 -4.30 9.34 -39.27 -0.37 -4.67 16 20 C 0.17 2.18 6.60 -39.22 -0.26 1.92 16 21 C -0.16 -1.80 9.99 -39.42 -0.39 -2.19 16 22 C -0.05 -0.45 10.04 -39.62 -0.40 -0.85 16 23 C -0.20 -1.87 10.02 -39.49 -0.40 -2.26 16 24 C 0.14 1.54 7.30 -39.44 -0.29 1.25 16 25 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 26 C -0.25 -2.97 8.21 -39.37 -0.32 -3.30 16 27 H 0.04 0.80 5.67 -51.93 -0.29 0.51 16 28 H 0.05 1.21 7.86 -51.93 -0.41 0.81 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.39 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.70 6.91 -51.93 -0.36 0.34 16 36 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 37 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.52 5.43 -52.49 -0.28 1.23 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -30.16 333.87 -7.60 -37.76 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.20 Total: 6.86 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.23 Total: -8.46 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.35 Total: -37.61 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.56 Total: -17.14 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.16 -7.60 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.391 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds