Wall clock time and date at job start Tue Mar 31 2020 08:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47125 * 2 1 4 4 H 1.09010 * 109.46997 * 304.99684 * 3 2 1 5 5 C 1.50701 * 109.47373 * 185.00063 * 3 2 1 6 6 H 1.08006 * 119.99942 * 239.99994 * 5 3 2 7 7 C 1.37879 * 120.00091 * 59.99195 * 5 3 2 8 8 N 1.31507 * 120.00043 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46945 * 119.99944 * 9 7 5 12 12 H 1.48500 * 109.47191 * 240.00359 * 9 7 5 13 13 N 1.46493 * 109.47359 * 64.99621 * 3 2 1 14 14 C 1.34780 * 120.00102 * 274.72683 * 13 3 2 15 15 O 1.21280 * 119.99890 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00029 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.46981 * 304.99380 * 16 14 13 18 18 C 1.52999 * 109.47357 * 64.99821 * 16 14 13 19 19 O 1.42908 * 109.47032 * 184.99941 * 16 14 13 20 20 C 1.35895 * 116.99898 * 155.32407 * 19 16 14 21 21 C 1.38773 * 120.04059 * 185.35749 * 20 19 16 22 22 C 1.38130 * 119.99335 * 179.97438 * 21 20 19 23 23 C 1.38254 * 120.08132 * 359.97438 * 22 21 20 24 24 C 1.38471 * 120.08367 * 0.03821 * 23 22 21 25 25 F 1.35105 * 119.99527 * 179.97438 * 24 23 22 26 26 C 1.38389 * 120.00792 * 359.70289 * 24 23 22 27 27 H 1.08997 * 109.47455 * 300.00554 * 1 2 3 28 28 H 1.09002 * 109.47308 * 60.00601 * 1 2 3 29 29 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47455 * 239.99446 * 2 1 3 31 31 H 1.09002 * 109.47308 * 119.99399 * 2 1 3 32 32 H 0.96999 * 120.00238 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00116 * 95.00697 * 13 3 2 34 34 H 1.09003 * 109.47094 * 60.00159 * 18 16 14 35 35 H 1.09005 * 109.46911 * 180.02562 * 18 16 14 36 36 H 1.08992 * 109.47190 * 300.00062 * 18 16 14 37 37 H 1.07995 * 120.00321 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.95851 * 180.02562 * 22 21 20 39 39 H 1.07999 * 119.95532 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.04101 * 180.27618 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5443 -0.1931 11 1 6.4962 -0.5190 -1.4624 12 1 6.4000 1.6156 -2.6091 13 7 1.6524 2.0975 1.2517 14 6 0.4371 2.6693 1.3649 15 8 -0.3354 2.6419 0.4303 16 6 0.0386 3.3436 2.6523 17 1 0.1504 2.6425 3.4794 18 6 0.9358 4.5600 2.8899 19 8 -1.3239 3.7661 2.5669 20 6 -1.9996 3.9104 3.7371 21 6 -3.3547 4.2092 3.7245 22 6 -4.0406 4.3552 4.9146 23 6 -3.3789 4.2036 6.1189 24 6 -2.0267 3.9057 6.1353 25 9 -1.3817 3.7584 7.3133 26 6 -1.3372 3.7533 4.9451 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8293 -0.0606 -2.9501 33 1 2.2718 2.1233 1.9977 34 1 0.8239 5.2611 2.0628 35 1 0.6478 5.0474 3.8214 36 1 1.9749 4.2378 2.9551 37 1 -3.8731 4.3268 2.7845 38 1 -5.0953 4.5874 4.9042 39 1 -3.9173 4.3178 7.0482 40 1 -0.2835 3.5166 4.9573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183957112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:15 Heat of formation + Delta-G solvation = -117.768081 kcal Electronic energy + Delta-G solvation = -23677.865051 eV Core-core repulsion = 19985.685927 eV Total energy + Delta-G solvation = -3692.179124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.95400 -41.68805 -40.38791 -38.32168 -36.87659 -34.51876 -33.54702 -32.23012 -31.63755 -30.59160 -28.93990 -25.97401 -24.95046 -23.89919 -23.41442 -21.93004 -21.13113 -19.70565 -19.20253 -17.91332 -17.44246 -17.30939 -17.05851 -16.92328 -16.64792 -16.44639 -16.11276 -15.73999 -15.26697 -15.12222 -14.60916 -14.43977 -14.00961 -13.94797 -13.66134 -13.31376 -13.24676 -13.17932 -12.92771 -12.86669 -12.70933 -12.53860 -12.21584 -12.16110 -12.09918 -11.96765 -11.60380 -11.05908 -10.68187 -10.51943 -9.95263 -9.70568 -9.31235 -8.16264 -6.33590 0.11018 0.25087 1.44826 1.46092 1.57187 1.66974 1.68271 2.40153 2.58194 2.74864 3.13781 3.16143 3.60919 3.72648 3.82266 3.89704 3.97096 4.05277 4.29174 4.46877 4.49198 4.54434 4.60621 4.68118 4.73551 4.98561 5.03878 5.06163 5.07230 5.21335 5.23560 5.33803 5.40940 5.52063 5.59606 5.69064 5.77413 5.89186 6.15107 6.25982 6.73851 6.89773 7.31969 7.49437 8.89379 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.003337 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.360223 B = 8389.536767 C = 8858.282955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.695 5.695 14 C 0.502 3.498 15 O -0.572 6.572 16 C 0.071 3.929 17 H 0.119 0.881 18 C -0.168 4.168 19 O -0.304 6.304 20 C 0.141 3.859 21 C -0.172 4.172 22 C -0.041 4.041 23 C -0.190 4.190 24 C 0.124 3.876 25 F -0.142 7.142 26 C -0.256 4.256 27 H 0.040 0.960 28 H 0.024 0.976 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.175 0.825 39 H 0.161 0.839 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 7.457 17.880 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.346 5.346 14 C 0.287 3.713 15 O -0.451 6.451 16 C 0.012 3.988 17 H 0.136 0.864 18 C -0.226 4.226 19 O -0.217 6.217 20 C 0.095 3.905 21 C -0.191 4.191 22 C -0.058 4.058 23 C -0.209 4.209 24 C 0.104 3.896 25 F -0.121 7.121 26 C -0.276 4.276 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.159 0.841 38 H 0.192 0.808 39 H 0.178 0.822 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.247 7.361 16.877 21.071 hybrid contribution 1.486 -0.276 -0.133 1.517 sum -8.761 7.085 16.744 20.182 Atomic orbital electron populations 1.21682 0.97205 0.99205 1.00083 1.21806 0.93511 0.99210 1.01571 1.18415 0.93836 0.89094 0.81028 0.98287 1.21597 0.91161 1.38886 1.06767 0.90651 1.25764 1.03251 0.94404 0.95058 1.70051 1.37019 1.38383 1.09881 0.85324 0.79179 0.77759 0.78228 1.18246 1.20599 1.21200 1.46123 1.14910 1.55540 1.18006 1.20570 0.82482 0.78908 0.89307 1.90693 1.52377 1.60301 1.41770 1.22342 0.81257 0.98782 0.96452 0.86377 1.22316 1.00144 0.96235 1.03872 1.86238 1.24862 1.81900 1.28670 1.19096 0.92376 0.94971 0.84017 1.20856 0.90974 1.06288 1.01005 1.21187 1.01390 0.93987 0.89262 1.21399 0.92260 1.06068 1.01182 1.17585 0.91456 1.00386 0.80143 1.91498 1.82050 1.93163 1.45380 1.21326 1.02632 1.12483 0.91122 0.94087 0.95638 0.93459 0.90834 0.93714 0.92615 0.75832 0.92061 0.88924 0.88306 0.84137 0.80751 0.82165 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.52 71.98 0.61 -5.02 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.98 2.24 44.25 0.10 14.08 16 4 H 0.00 -0.05 7.57 -2.38 -0.02 -0.06 16 5 C -0.55 -27.96 8.73 25.60 0.22 -27.74 16 6 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -51.63 11.29 21.45 0.24 -51.39 16 9 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 13 N -0.70 -27.38 4.98 -446.10 -2.22 -29.60 16 14 C 0.50 19.63 5.75 87.66 0.50 20.13 16 15 O -0.57 -27.94 13.68 15.96 0.22 -27.72 16 16 C 0.07 2.02 2.64 29.85 0.08 2.10 16 17 H 0.12 2.72 6.31 -2.39 -0.02 2.70 16 18 C -0.17 -3.79 9.12 71.98 0.66 -3.13 16 19 O -0.30 -9.50 9.34 -73.38 -0.69 -10.19 16 20 C 0.14 3.53 6.60 22.50 0.15 3.68 16 21 C -0.17 -3.58 9.99 22.37 0.22 -3.36 16 22 C -0.04 -0.59 10.04 22.25 0.22 -0.37 16 23 C -0.19 -2.95 10.02 22.33 0.22 -2.72 16 24 C 0.12 2.47 7.30 22.36 0.16 2.63 16 25 F -0.14 -2.97 17.27 44.97 0.78 -2.20 16 26 C -0.26 -5.56 8.21 22.41 0.18 -5.38 16 27 H 0.04 1.79 5.67 -2.39 -0.01 1.78 16 28 H 0.02 1.24 7.86 -2.39 -0.02 1.22 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.41 13.01 8.31 -92.71 -0.77 12.24 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.67 6.91 -2.38 -0.02 1.65 16 36 H 0.10 1.90 7.92 -2.39 -0.02 1.88 16 37 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.15 2.87 5.43 -2.91 -0.02 2.86 16 Total: -1.00 -67.99 333.87 4.61 -63.38 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.30 Total: 24.10 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 3.96 Total: -9.60 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.98 Total: -80.99 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.47 Total: -37.91 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -67.99 4.61 -63.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.390 kcal (2) G-P(sol) polarization free energy of solvation -67.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds