Wall clock time and date at job start Tue Mar 31 2020 08:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 H 1.08998 * 109.47368 * 304.99974 * 3 2 1 5 5 C 1.50700 * 109.46767 * 184.99728 * 3 2 1 6 6 H 1.08002 * 120.00142 * 239.99848 * 5 3 2 7 7 C 1.37879 * 120.00040 * 60.00534 * 5 3 2 8 8 N 1.31513 * 119.99708 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47106 * 60.00179 * 9 7 5 11 11 H 1.48504 * 109.46800 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47225 * 299.99906 * 9 7 5 13 13 N 1.46498 * 109.46868 * 65.00251 * 3 2 1 14 14 C 1.34782 * 119.99911 * 274.99501 * 13 3 2 15 15 O 1.21275 * 119.99734 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99999 * 180.02562 * 14 13 3 17 17 H 1.08989 * 109.47266 * 59.99589 * 16 14 13 18 18 C 1.53006 * 109.46873 * 299.99860 * 16 14 13 19 19 O 1.42901 * 109.47062 * 180.02562 * 16 14 13 20 20 C 1.35894 * 116.99529 * 204.67419 * 19 16 14 21 21 C 1.38772 * 120.03699 * 174.63946 * 20 19 16 22 22 C 1.38138 * 119.99436 * 179.70221 * 21 20 19 23 23 C 1.38257 * 120.07935 * 0.25470 * 22 21 20 24 24 C 1.38478 * 120.07973 * 0.02562 * 23 22 21 25 25 F 1.35104 * 119.99184 * 180.02562 * 24 23 22 26 26 C 1.38383 * 120.01172 * 359.97438 * 24 23 22 27 27 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47049 * 299.99859 * 1 2 3 29 29 H 1.09002 * 109.46973 * 59.99942 * 1 2 3 30 30 H 1.09003 * 109.47156 * 240.00604 * 2 1 3 31 31 H 1.08995 * 109.47316 * 120.00029 * 2 1 3 32 32 H 0.96997 * 119.99662 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00578 * 94.99454 * 13 3 2 34 34 H 1.08995 * 109.47545 * 300.00225 * 18 16 14 35 35 H 1.09006 * 109.46935 * 60.00526 * 18 16 14 36 36 H 1.09007 * 109.46796 * 180.02562 * 18 16 14 37 37 H 1.07997 * 120.00537 * 359.97438 * 21 20 19 38 38 H 1.07992 * 119.96484 * 180.27796 * 22 21 20 39 39 H 1.07990 * 119.95917 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.03947 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1728 9 14 6.0050 0.8814 -1.3816 10 1 6.5974 0.1474 -0.2348 11 1 6.3978 0.2180 -2.6508 12 1 6.4995 2.2816 -1.3819 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0365 3.3386 2.6545 17 1 0.7279 4.1539 2.8668 18 6 0.0805 2.3221 3.7973 19 8 -1.2891 3.8575 2.5300 20 6 -1.6218 4.8996 3.3363 21 6 -2.8524 5.5246 3.1915 22 6 -3.1922 6.5798 4.0157 23 6 -2.3054 7.0181 4.9816 24 6 -1.0743 6.4006 5.1250 25 9 -0.2093 6.8299 6.0699 26 6 -0.7302 5.3431 4.3013 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0616 -2.9494 33 1 2.2718 2.1231 1.9979 34 1 -0.6108 1.5066 3.5851 35 1 1.0916 1.9259 3.8924 36 1 -0.2082 2.8096 4.7285 37 1 -3.5461 5.1831 2.4376 38 1 -4.1517 7.0629 3.9056 39 1 -2.5732 7.8430 5.6251 40 1 0.2300 4.8615 4.4125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183957147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:21 Heat of formation + Delta-G solvation = -99.826182 kcal Electronic energy + Delta-G solvation = -23668.845193 eV Core-core repulsion = 19977.444088 eV Total energy + Delta-G solvation = -3691.401105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.10869 -40.57333 -38.99759 -37.28681 -35.05149 -32.89754 -31.92102 -30.92068 -30.59917 -29.69010 -27.00344 -24.75616 -23.34875 -22.84272 -22.39603 -20.31893 -19.39928 -18.75937 -17.68344 -16.63364 -16.37247 -16.18435 -15.92172 -15.55998 -15.41783 -15.24826 -14.54088 -14.32835 -14.24447 -13.80524 -13.21300 -13.09891 -12.73543 -12.67683 -12.41162 -12.05437 -11.96041 -11.68060 -11.55430 -11.33399 -11.27158 -11.03081 -10.96510 -10.84586 -10.36329 -10.22870 -9.66851 -9.19534 -9.11679 -9.01149 -8.54747 -8.41343 -7.92629 -6.16644 -4.26787 0.92171 1.07680 2.79147 3.19752 3.22907 3.28617 3.29712 3.39832 3.98923 4.04076 4.32313 4.53357 4.65545 4.77041 4.85431 4.93743 5.07331 5.14341 5.17182 5.29796 5.52276 5.57832 5.80312 5.83692 5.98282 6.04873 6.10418 6.36029 6.42626 6.48869 6.62201 6.99561 7.12229 7.21631 7.30431 7.36161 7.56681 7.66869 7.84146 8.12671 8.54215 8.70856 9.00135 9.40405 10.88595 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.003411 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.950003 B = 8206.235203 C = 8873.107564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.524 6.524 16 C 0.060 3.940 17 H 0.095 0.905 18 C -0.175 4.175 19 O -0.275 6.275 20 C 0.168 3.832 21 C -0.162 4.162 22 C -0.051 4.051 23 C -0.199 4.199 24 C 0.138 3.862 25 F -0.138 7.138 26 C -0.253 4.253 27 H 0.023 0.977 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.388 0.612 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 8.792 14.348 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.400 6.400 16 C 0.000 4.000 17 H 0.113 0.887 18 C -0.233 4.233 19 O -0.186 6.186 20 C 0.121 3.879 21 C -0.181 4.181 22 C -0.070 4.070 23 C -0.218 4.218 24 C 0.119 3.881 25 F -0.117 7.117 26 C -0.272 4.272 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.631 8.553 13.329 18.536 hybrid contribution 1.721 0.088 0.616 1.830 sum -7.910 8.641 13.945 18.213 Atomic orbital electron populations 1.21851 0.98290 0.98164 1.01279 1.21945 0.92632 0.99669 1.02400 1.18837 0.94277 0.89200 0.80558 0.93174 1.21172 0.90546 1.39396 1.06436 0.92082 1.24881 0.98662 0.94721 0.95328 1.69880 1.35290 1.37317 1.09330 0.86503 0.84733 0.78342 0.77498 1.20133 1.21098 1.20168 1.46427 1.13885 1.55957 1.18866 1.19731 0.83447 0.80151 0.87779 1.90717 1.51056 1.58572 1.39704 1.22476 0.83439 0.97454 0.96654 0.88747 1.22334 1.04307 0.99637 0.96982 1.86285 1.30882 1.44261 1.57197 1.18864 0.93375 0.86996 0.88664 1.20579 0.95979 0.98267 1.03245 1.20803 0.98897 0.94525 0.92730 1.21022 0.93815 1.03812 1.03179 1.17387 0.88166 0.94546 0.88021 1.91507 1.68992 1.88903 1.62284 1.21275 1.02899 1.02241 1.00823 0.95742 0.94295 0.93118 0.88175 0.94937 0.92420 0.77897 0.90556 0.89896 0.91223 0.84242 0.84304 0.84764 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.70 -13.78 4.91 -54.93 -0.27 -14.05 16 14 C 0.51 9.77 5.80 -10.98 -0.06 9.70 16 15 O -0.52 -12.28 13.64 -14.35 -0.20 -12.47 16 16 C 0.06 0.87 2.65 -27.88 -0.07 0.80 16 17 H 0.09 1.19 6.31 -51.94 -0.33 0.86 16 18 C -0.18 -2.04 9.06 37.16 0.34 -1.71 16 19 O -0.27 -4.30 9.33 -39.32 -0.37 -4.67 16 20 C 0.17 2.19 6.60 -39.23 -0.26 1.93 16 21 C -0.16 -1.80 9.99 -39.42 -0.39 -2.20 16 22 C -0.05 -0.46 10.04 -39.61 -0.40 -0.85 16 23 C -0.20 -1.88 10.02 -39.49 -0.40 -2.28 16 24 C 0.14 1.55 7.30 -39.44 -0.29 1.26 16 25 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 26 C -0.25 -2.99 8.21 -39.37 -0.32 -3.31 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 29 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.45 7.96 -40.82 -0.32 6.13 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.85 7.56 -51.93 -0.39 0.46 16 36 H 0.07 0.69 6.90 -51.93 -0.36 0.33 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 1.53 5.43 -52.49 -0.28 1.24 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -30.19 333.02 -7.58 -37.76 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.17 Total: 6.86 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.24 Total: -8.44 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.36 Total: -37.65 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.56 Total: -17.14 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.19 -7.58 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.065 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds