Wall clock time and date at job start Tue Mar 31 2020 08:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 H 1.08998 * 109.47368 * 304.99974 * 3 2 1 5 5 C 1.50700 * 109.46767 * 184.99728 * 3 2 1 6 6 H 1.08002 * 120.00142 * 239.99848 * 5 3 2 7 7 C 1.37879 * 120.00040 * 60.00534 * 5 3 2 8 8 N 1.31513 * 119.99708 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47106 * 60.00179 * 9 7 5 11 11 H 1.48504 * 109.46800 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47225 * 299.99906 * 9 7 5 13 13 N 1.46498 * 109.46868 * 65.00251 * 3 2 1 14 14 C 1.34782 * 119.99911 * 274.99501 * 13 3 2 15 15 O 1.21275 * 119.99734 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99999 * 180.02562 * 14 13 3 17 17 H 1.08989 * 109.47266 * 59.99589 * 16 14 13 18 18 C 1.53006 * 109.46873 * 299.99860 * 16 14 13 19 19 O 1.42901 * 109.47062 * 180.02562 * 16 14 13 20 20 C 1.35894 * 116.99529 * 204.67419 * 19 16 14 21 21 C 1.38772 * 120.03699 * 174.63946 * 20 19 16 22 22 C 1.38138 * 119.99436 * 179.70221 * 21 20 19 23 23 C 1.38257 * 120.07935 * 0.25470 * 22 21 20 24 24 C 1.38478 * 120.07973 * 0.02562 * 23 22 21 25 25 F 1.35104 * 119.99184 * 180.02562 * 24 23 22 26 26 C 1.38383 * 120.01172 * 359.97438 * 24 23 22 27 27 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47049 * 299.99859 * 1 2 3 29 29 H 1.09002 * 109.46973 * 59.99942 * 1 2 3 30 30 H 1.09003 * 109.47156 * 240.00604 * 2 1 3 31 31 H 1.08995 * 109.47316 * 120.00029 * 2 1 3 32 32 H 0.96997 * 119.99662 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00578 * 94.99454 * 13 3 2 34 34 H 1.08995 * 109.47545 * 300.00225 * 18 16 14 35 35 H 1.09006 * 109.46935 * 60.00526 * 18 16 14 36 36 H 1.09007 * 109.46796 * 180.02562 * 18 16 14 37 37 H 1.07997 * 120.00537 * 359.97438 * 21 20 19 38 38 H 1.07992 * 119.96484 * 180.27796 * 22 21 20 39 39 H 1.07990 * 119.95917 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.03947 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1728 9 14 6.0050 0.8814 -1.3816 10 1 6.5974 0.1474 -0.2348 11 1 6.3978 0.2180 -2.6508 12 1 6.4995 2.2816 -1.3819 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0365 3.3386 2.6545 17 1 0.7279 4.1539 2.8668 18 6 0.0805 2.3221 3.7973 19 8 -1.2891 3.8575 2.5300 20 6 -1.6218 4.8996 3.3363 21 6 -2.8524 5.5246 3.1915 22 6 -3.1922 6.5798 4.0157 23 6 -2.3054 7.0181 4.9816 24 6 -1.0743 6.4006 5.1250 25 9 -0.2093 6.8299 6.0699 26 6 -0.7302 5.3431 4.3013 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0616 -2.9494 33 1 2.2718 2.1231 1.9979 34 1 -0.6108 1.5066 3.5851 35 1 1.0916 1.9259 3.8924 36 1 -0.2082 2.8096 4.7285 37 1 -3.5461 5.1831 2.4376 38 1 -4.1517 7.0629 3.9056 39 1 -2.5732 7.8430 5.6251 40 1 0.2300 4.8615 4.4125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183957147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:20 Heat of formation + Delta-G solvation = -117.446734 kcal Electronic energy + Delta-G solvation = -23669.609277 eV Core-core repulsion = 19977.444088 eV Total energy + Delta-G solvation = -3692.165190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.95789 -41.69168 -40.39275 -38.31858 -36.87259 -34.53604 -33.50844 -32.25296 -31.64549 -30.60046 -28.89004 -25.95042 -24.97482 -23.89648 -23.42635 -21.92718 -21.11230 -19.72075 -19.18877 -17.90717 -17.50385 -17.26718 -16.98062 -16.95436 -16.63425 -16.51899 -16.13152 -15.79874 -15.22406 -15.03819 -14.59568 -14.39055 -14.11806 -13.95332 -13.55526 -13.37292 -13.24457 -13.17641 -12.91394 -12.89614 -12.65416 -12.54245 -12.22825 -12.16548 -12.07739 -11.98304 -11.58317 -11.07715 -10.67518 -10.50729 -9.95468 -9.70180 -9.31414 -8.16150 -6.33876 0.10749 0.24854 1.45707 1.47348 1.54861 1.64126 1.71535 2.40159 2.57980 2.74806 3.13502 3.15906 3.61160 3.72599 3.81057 3.91262 3.96889 4.05173 4.28960 4.47993 4.49797 4.56307 4.61986 4.68656 4.75173 4.98343 5.04254 5.06140 5.08779 5.21034 5.25238 5.33514 5.42419 5.52909 5.59048 5.69005 5.78244 5.89457 6.15672 6.25883 6.73165 6.89839 7.31746 7.49451 8.89006 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.003411 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.950003 B = 8206.235203 C = 8873.107564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.695 5.695 14 C 0.502 3.498 15 O -0.572 6.572 16 C 0.070 3.930 17 H 0.116 0.884 18 C -0.168 4.168 19 O -0.304 6.304 20 C 0.141 3.859 21 C -0.172 4.172 22 C -0.041 4.041 23 C -0.190 4.190 24 C 0.123 3.877 25 F -0.142 7.142 26 C -0.257 4.257 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.175 0.825 39 H 0.161 0.839 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 9.880 16.865 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.346 5.346 14 C 0.287 3.713 15 O -0.452 6.452 16 C 0.011 3.989 17 H 0.134 0.866 18 C -0.225 4.225 19 O -0.216 6.216 20 C 0.095 3.905 21 C -0.191 4.191 22 C -0.058 4.058 23 C -0.209 4.209 24 C 0.104 3.896 25 F -0.121 7.121 26 C -0.276 4.276 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.159 0.841 38 H 0.193 0.807 39 H 0.178 0.822 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.352 9.658 15.903 20.824 hybrid contribution 1.533 -0.152 -0.153 1.548 sum -7.819 9.507 15.750 19.989 Atomic orbital electron populations 1.21690 0.97156 0.99184 1.00168 1.21789 0.93534 0.99048 1.01562 1.18408 0.93742 0.89200 0.80979 0.98443 1.21543 0.91233 1.39128 1.06845 0.90740 1.25762 1.03267 0.94355 0.95012 1.70042 1.37165 1.38206 1.09869 0.85431 0.79123 0.78419 0.77560 1.18776 1.21375 1.19727 1.46128 1.14728 1.55771 1.17940 1.20575 0.82444 0.79245 0.89030 1.90693 1.52310 1.60231 1.41924 1.22350 0.83989 0.98398 0.94180 0.86609 1.22332 1.05130 0.98580 0.96496 1.86229 1.31071 1.45624 1.58710 1.19094 0.94609 0.87292 0.89460 1.20861 0.95548 0.98864 1.03848 1.21191 1.00069 0.93269 0.91302 1.21400 0.92836 1.03723 1.02955 1.17589 0.88926 0.94905 0.88185 1.91497 1.69272 1.88929 1.62405 1.21328 1.03023 1.02579 1.00661 0.93493 0.93797 0.95808 0.90939 0.93609 0.92584 0.75824 0.91730 0.88184 0.89027 0.84104 0.80732 0.82161 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.65 16 3 C 0.28 14.02 2.24 44.25 0.10 14.12 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -28.26 8.73 25.60 0.22 -28.03 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.48 16 9 Si 0.97 41.25 29.54 68.60 2.03 43.28 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 13 N -0.69 -27.38 4.91 -446.09 -2.19 -29.57 16 14 C 0.50 19.63 5.80 87.66 0.51 20.13 16 15 O -0.57 -27.95 13.64 16.02 0.22 -27.73 16 16 C 0.07 2.00 2.65 29.85 0.08 2.07 16 17 H 0.12 2.75 6.31 -2.39 -0.02 2.73 16 18 C -0.17 -3.62 9.06 71.98 0.65 -2.97 16 19 O -0.30 -9.50 9.33 -73.32 -0.68 -10.18 16 20 C 0.14 3.56 6.60 22.50 0.15 3.71 16 21 C -0.17 -3.61 9.99 22.37 0.22 -3.39 16 22 C -0.04 -0.60 10.04 22.25 0.22 -0.38 16 23 C -0.19 -2.99 10.02 22.33 0.22 -2.77 16 24 C 0.12 2.49 7.30 22.36 0.16 2.66 16 25 F -0.14 -3.02 17.27 44.97 0.78 -2.24 16 26 C -0.26 -5.65 8.21 22.41 0.18 -5.46 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 29 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 30 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.41 13.00 7.96 -92.71 -0.74 12.26 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.79 7.56 -2.38 -0.02 1.77 16 36 H 0.09 1.59 6.90 -2.38 -0.02 1.58 16 37 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.16 1.67 8.06 -2.92 -0.02 1.64 16 40 H 0.15 2.92 5.43 -2.91 -0.02 2.90 16 Total: -1.00 -68.15 333.02 4.67 -63.47 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.33 Total: 24.09 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.96 Total: -9.63 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.95 Total: -81.05 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.47 Total: -37.92 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -68.15 4.67 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183957147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.975 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds