Wall clock time and date at job start Tue Mar 31 2020 08:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47089 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47179 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.20084 * 90.00415 * 19 18 17 21 21 C 1.38423 * 114.92241 * 179.97438 * 20 19 18 22 22 C 1.33397 * 114.91879 * 359.97438 * 21 20 19 23 23 C 1.50692 * 125.20068 * 180.02562 * 22 21 20 24 24 S 1.75881 * 109.59344 * 359.76187 * 22 21 20 25 25 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 26 26 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 29 29 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 30 30 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 32 32 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 33 33 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 34 34 H 1.09003 * 109.47065 * 299.99222 * 17 16 14 35 35 H 1.08999 * 109.47620 * 60.00011 * 17 16 14 36 36 H 1.08996 * 109.47388 * 300.00240 * 18 17 16 37 37 H 1.09007 * 109.46718 * 59.99547 * 18 17 16 38 38 H 1.07999 * 122.53962 * 359.95507 * 20 19 18 39 39 H 1.07995 * 122.54218 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.47506 * 90.00439 * 23 22 21 41 41 H 1.08997 * 109.47379 * 210.00375 * 23 22 21 42 42 H 1.09002 * 109.47523 * 330.00052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3821 3.8951 2.5210 18 6 -1.7869 4.5790 3.8285 19 6 -3.1842 5.1278 3.6966 20 6 -4.3022 4.4651 3.9972 21 6 -5.4732 5.1750 3.7952 22 6 -5.3062 6.4144 3.3310 23 6 -6.4177 7.3865 3.0302 24 16 -3.5900 6.7431 3.1311 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8770 0.4827 -2.1133 31 1 2.2720 2.1230 1.9979 32 1 0.0680 2.6142 3.4688 33 1 0.7281 4.1539 2.8669 34 1 -1.4131 4.6194 1.7070 35 1 -2.0738 3.0799 2.3086 36 1 -1.7560 3.8545 4.6422 37 1 -1.0952 5.3942 4.0413 38 1 -4.2943 3.4514 4.3696 39 1 -6.4481 4.7574 3.9987 40 1 -6.6367 7.9751 3.9211 41 1 -6.1109 8.0507 2.2223 42 1 -7.3097 6.8368 2.7296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183969532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:24 Heat of formation + Delta-G solvation = -29.708245 kcal Electronic energy + Delta-G solvation = -20889.668325 eV Core-core repulsion = 17767.520937 eV Total energy + Delta-G solvation = -3122.147387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.28981 -38.27761 -35.65823 -34.69733 -32.40788 -32.03991 -31.36202 -28.91914 -27.41237 -25.19845 -23.25668 -22.63803 -21.85036 -20.38925 -19.51385 -18.97776 -17.37611 -16.90425 -15.90508 -15.72239 -15.40847 -15.35552 -14.42320 -14.24900 -14.07910 -13.61131 -13.32225 -13.17583 -13.11395 -12.82811 -12.58306 -12.26017 -12.05161 -11.95027 -11.77583 -11.57375 -11.41018 -11.31941 -11.04403 -10.88226 -10.86983 -10.64696 -10.57428 -9.91435 -9.54542 -9.21627 -9.04270 -8.74263 -8.60686 -8.55970 -8.02112 -6.20581 -4.22746 0.83490 1.45076 1.85238 2.58642 3.23583 3.31559 3.35881 3.41433 4.00374 4.32280 4.58492 4.66921 4.92964 4.98775 5.10661 5.13261 5.17888 5.21006 5.35087 5.39616 5.52135 5.59862 5.65504 5.67274 5.81987 5.98055 5.98678 6.03888 6.12743 6.20020 6.20588 6.35370 6.40968 6.67249 6.71671 6.87057 6.97798 7.29612 7.34232 7.54688 8.18164 8.57021 8.77367 9.01090 9.40944 10.91533 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.002687 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.881838 B =10419.953677 C =10562.841367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.295 1.295 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.551 6.551 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.051 4.051 19 C -0.165 4.165 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.189 4.189 23 C -0.081 4.081 24 S 0.095 5.905 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.321 9.311 12.852 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.431 6.431 16 C -0.183 4.183 17 C -0.134 4.134 18 C -0.090 4.090 19 C -0.282 4.282 20 C -0.171 4.171 21 C -0.168 4.168 22 C -0.306 4.306 23 C -0.140 4.140 24 S 0.359 5.641 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.860 10.482 11.563 24.481 hybrid contribution -0.820 -1.808 0.094 1.987 sum -19.680 8.675 11.658 24.463 Atomic orbital electron populations 1.21868 0.96952 0.98927 1.02273 1.22282 0.94345 1.00042 1.01010 1.19125 0.95518 0.88472 0.83103 0.93416 1.21069 0.88706 1.39671 1.07786 0.90241 1.24845 0.94868 0.95179 0.97697 1.69871 1.08691 1.44602 1.29826 0.86897 0.80980 0.79932 0.80879 1.20270 1.18464 1.22200 1.46195 1.15033 1.56060 1.17845 1.20467 0.82412 0.79111 0.89422 1.90663 1.51544 1.60002 1.40856 1.21689 0.98270 1.01280 0.97053 1.21317 0.95201 1.00770 0.96151 1.20242 0.89711 0.99990 0.99105 1.24482 0.99616 0.97004 1.07085 1.20069 0.91076 1.01434 1.04503 1.20051 0.99610 0.93857 1.03271 1.24457 0.97606 0.99788 1.08732 1.20311 0.94797 0.96968 1.01893 1.84295 0.99890 1.13889 1.66018 0.92902 0.92924 0.95075 0.92873 0.92371 0.92314 0.77271 0.89366 0.89275 0.91009 0.90898 0.89892 0.90719 0.84413 0.84636 0.90932 0.91373 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.72 1.83 -69.08 -0.13 5.59 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.43 9.31 -34.44 -0.32 -14.75 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 9 Si 0.88 21.93 24.41 -169.99 -4.15 17.78 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 N -0.70 -13.62 5.02 -54.93 -0.28 -13.89 16 14 C 0.50 9.00 6.40 -10.98 -0.07 8.92 16 15 O -0.55 -11.85 13.12 5.56 0.07 -11.78 16 16 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 17 C -0.10 -1.18 4.49 -26.73 -0.12 -1.30 16 18 C -0.05 -0.50 5.71 -27.88 -0.16 -0.66 16 19 C -0.16 -1.76 5.76 -36.00 -0.21 -1.97 16 20 C -0.14 -1.45 10.05 -41.21 -0.41 -1.86 16 21 C -0.14 -1.33 10.05 -41.21 -0.41 -1.75 16 22 C -0.19 -1.82 6.51 -36.00 -0.23 -2.05 16 23 C -0.08 -0.55 10.38 36.00 0.37 -0.18 16 24 S 0.10 0.99 23.31 -107.50 -2.51 -1.51 16 25 H 0.05 1.04 5.65 -51.93 -0.29 0.74 16 26 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 6.69 8.54 -40.82 -0.35 6.34 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -31.67 349.31 -9.24 -40.92 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.65 Total: 4.62 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.77 Total: -15.64 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.50 Total: -39.65 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.67 -9.24 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183969532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.209 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds