Wall clock time and date at job start Tue Mar 31 2020 08:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47089 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47179 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.20084 * 90.00415 * 19 18 17 21 21 C 1.38423 * 114.92241 * 179.97438 * 20 19 18 22 22 C 1.33397 * 114.91879 * 359.97438 * 21 20 19 23 23 C 1.50692 * 125.20068 * 180.02562 * 22 21 20 24 24 S 1.75881 * 109.59344 * 359.76187 * 22 21 20 25 25 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 26 26 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 29 29 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 30 30 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 32 32 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 33 33 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 34 34 H 1.09003 * 109.47065 * 299.99222 * 17 16 14 35 35 H 1.08999 * 109.47620 * 60.00011 * 17 16 14 36 36 H 1.08996 * 109.47388 * 300.00240 * 18 17 16 37 37 H 1.09007 * 109.46718 * 59.99547 * 18 17 16 38 38 H 1.07999 * 122.53962 * 359.95507 * 20 19 18 39 39 H 1.07995 * 122.54218 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.47506 * 90.00439 * 23 22 21 41 41 H 1.08997 * 109.47379 * 210.00375 * 23 22 21 42 42 H 1.09002 * 109.47523 * 330.00052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3821 3.8951 2.5210 18 6 -1.7869 4.5790 3.8285 19 6 -3.1842 5.1278 3.6966 20 6 -4.3022 4.4651 3.9972 21 6 -5.4732 5.1750 3.7952 22 6 -5.3062 6.4144 3.3310 23 6 -6.4177 7.3865 3.0302 24 16 -3.5900 6.7431 3.1311 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8770 0.4827 -2.1133 31 1 2.2720 2.1230 1.9979 32 1 0.0680 2.6142 3.4688 33 1 0.7281 4.1539 2.8669 34 1 -1.4131 4.6194 1.7070 35 1 -2.0738 3.0799 2.3086 36 1 -1.7560 3.8545 4.6422 37 1 -1.0952 5.3942 4.0413 38 1 -4.2943 3.4514 4.3696 39 1 -6.4481 4.7574 3.9987 40 1 -6.6367 7.9751 3.9211 41 1 -6.1109 8.0507 2.2223 42 1 -7.3097 6.8368 2.7296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183969532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:23 Heat of formation + Delta-G solvation = -48.843295 kcal Electronic energy + Delta-G solvation = -20890.498083 eV Core-core repulsion = 17767.520937 eV Total energy + Delta-G solvation = -3122.977145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78964 -39.03005 -37.25269 -35.77174 -34.37940 -33.37124 -32.53503 -29.99755 -29.08583 -26.11365 -24.61482 -23.93055 -22.92743 -21.89223 -21.08953 -19.73334 -19.05329 -17.90138 -17.56042 -17.28966 -16.72198 -16.28341 -15.90293 -15.55086 -14.99309 -14.90520 -14.79004 -14.18227 -14.16859 -13.94800 -13.81667 -13.67866 -13.40736 -13.28173 -12.97685 -12.77656 -12.73093 -12.50150 -12.31191 -12.28024 -12.18099 -11.85665 -11.69439 -11.47952 -11.37714 -11.22755 -10.86493 -10.58282 -9.70481 -9.38845 -9.30166 -8.38817 -6.43623 0.08965 0.71398 1.10923 1.25240 1.33677 1.43564 1.84928 1.89246 2.25042 2.58548 2.97155 3.78168 3.93693 4.01746 4.08866 4.24399 4.30826 4.32797 4.42684 4.45536 4.50011 4.65650 4.72706 4.75107 4.76659 4.82693 4.88178 4.92679 5.01014 5.10884 5.13632 5.16566 5.24174 5.34172 5.39956 5.42261 5.43550 5.52863 5.68426 5.72607 6.16238 6.59059 6.97424 7.20435 7.57391 8.76383 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.002687 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.881838 B =10419.953677 C =10562.841367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.263 1.263 12 H -0.294 1.294 13 N -0.704 5.704 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.130 4.130 17 C -0.088 4.088 18 C -0.043 4.043 19 C -0.181 4.181 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.190 4.190 23 C -0.082 4.082 24 S 0.065 5.935 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.270 0.730 31 H 0.407 0.593 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.146 8.883 14.403 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.143 3.857 4 H 0.035 0.965 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.188 1.188 12 H -0.221 1.221 13 N -0.354 5.354 14 C 0.284 3.716 15 O -0.470 6.470 16 C -0.169 4.169 17 C -0.127 4.127 18 C -0.082 4.082 19 C -0.298 4.298 20 C -0.176 4.176 21 C -0.180 4.180 22 C -0.308 4.308 23 C -0.141 4.141 24 S 0.328 5.672 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.242 0.758 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.693 10.059 13.151 26.502 hybrid contribution -0.283 -1.599 -0.345 1.660 sum -20.975 8.460 12.806 25.991 Atomic orbital electron populations 1.21748 0.95220 1.00426 1.01569 1.22199 0.95816 0.98567 1.00943 1.18741 0.93039 0.89658 0.84297 0.96459 1.21325 0.90479 1.38312 1.06863 0.92452 1.25548 0.95712 0.95985 0.99857 1.69976 1.10209 1.46271 1.30845 0.86042 0.79222 0.79956 0.78417 1.18533 1.18780 1.22131 1.46064 1.16159 1.56344 1.16783 1.21427 0.81149 0.78109 0.90876 1.90652 1.52441 1.61154 1.42761 1.21702 0.98539 1.02212 0.94489 1.21207 0.94825 0.99765 0.96903 1.20193 0.89397 1.00555 0.98043 1.24650 1.00298 0.96971 1.07880 1.20364 0.91183 1.02071 1.03984 1.20344 1.00414 0.93938 1.03328 1.24844 0.97407 1.00397 1.08117 1.20417 0.94316 0.96760 1.02577 1.84360 1.01465 1.14707 1.66643 0.92422 0.94839 0.92385 0.94093 0.91191 0.92121 0.75799 0.86012 0.86996 0.93521 0.92367 0.87721 0.89730 0.83070 0.82741 0.89655 0.91213 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.52 71.98 0.61 -4.51 16 2 C -0.14 -5.91 5.11 30.60 0.16 -5.75 16 3 C 0.25 11.69 1.83 44.24 0.08 11.77 16 4 H 0.02 0.94 6.63 -2.39 -0.02 0.92 16 5 C -0.53 -29.00 9.31 25.60 0.24 -28.76 16 6 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 7 C 0.03 1.62 5.45 84.65 0.46 2.09 16 8 N -0.93 -56.29 13.96 21.45 0.30 -55.99 16 9 Si 0.94 45.40 24.41 68.60 1.67 47.08 16 10 H -0.26 -11.83 6.83 99.48 0.68 -11.15 16 11 H -0.26 -12.78 6.53 99.48 0.65 -12.13 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 13 N -0.70 -26.54 5.02 -446.10 -2.24 -28.78 16 14 C 0.50 17.20 6.40 87.66 0.56 17.76 16 15 O -0.59 -25.15 13.12 -3.01 -0.04 -25.19 16 16 C -0.13 -2.88 5.70 29.85 0.17 -2.71 16 17 C -0.09 -2.03 4.49 30.60 0.14 -1.89 16 18 C -0.04 -0.73 5.71 29.85 0.17 -0.56 16 19 C -0.18 -3.62 5.76 24.59 0.14 -3.48 16 20 C -0.15 -2.75 10.05 21.22 0.21 -2.53 16 21 C -0.15 -2.65 10.05 21.22 0.21 -2.44 16 22 C -0.19 -3.42 6.51 24.59 0.16 -3.26 16 23 C -0.08 -0.99 10.38 71.23 0.74 -0.25 16 24 S 0.06 1.31 23.31 -56.49 -1.32 -0.01 16 25 H 0.06 2.15 5.65 -2.39 -0.01 2.14 16 26 H 0.03 1.40 7.85 -2.39 -0.02 1.38 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.86 3.22 -2.38 -0.01 1.86 16 29 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.41 13.21 8.54 -92.71 -0.79 12.42 16 32 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.41 349.31 2.57 -66.85 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.13 Total: 20.59 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 4.06 Total: -24.54 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -1.94 Total: -84.77 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.04 Total: -25.19 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.08 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: -0.01 kcal Total: -69.41 2.57 -66.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183969532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.003 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds