Wall clock time and date at job start Tue Mar 31 2020 08:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47363 * 2 1 4 4 H 1.08999 * 109.47219 * 54.92350 * 3 2 1 5 5 C 1.50693 * 109.47204 * 174.92521 * 3 2 1 6 6 H 1.08006 * 120.00509 * 119.99638 * 5 3 2 7 7 C 1.37882 * 120.00041 * 299.99990 * 5 3 2 8 8 N 1.31508 * 119.99922 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47383 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46855 * 119.99709 * 9 7 5 12 12 H 1.48495 * 109.47315 * 239.99843 * 9 7 5 13 13 N 1.46897 * 109.46951 * 294.92216 * 3 2 1 14 14 C 1.46898 * 111.00075 * 154.12928 * 13 3 2 15 15 C 1.50701 * 109.47499 * 185.61980 * 14 13 3 16 16 C 1.38273 * 119.90139 * 90.00322 * 15 14 13 17 17 C 1.38203 * 120.16581 * 179.97438 * 16 15 14 18 18 C 1.38791 * 119.97042 * 0.02562 * 17 16 15 19 19 S 1.76201 * 120.09030 * 179.97438 * 18 17 16 20 20 C 1.81400 * 103.00325 * 359.97438 * 19 18 17 21 21 C 1.39359 * 119.81367 * 0.02562 * 18 17 16 22 22 O 1.36017 * 120.08337 * 179.97438 * 21 18 17 23 23 C 1.42895 * 117.00034 * 179.97438 * 22 21 18 24 24 C 1.38302 * 119.90891 * 269.73165 * 15 14 13 25 25 H 1.08994 * 109.47414 * 180.50234 * 1 2 3 26 26 H 1.09002 * 109.47109 * 300.50286 * 1 2 3 27 27 H 1.09008 * 109.46929 * 60.49998 * 1 2 3 28 28 H 1.08999 * 109.47293 * 239.99944 * 2 1 3 29 29 H 1.08999 * 109.47097 * 119.99780 * 2 1 3 30 30 H 0.97003 * 120.00297 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00499 * 278.08752 * 13 3 2 32 32 H 1.08999 * 109.47286 * 305.62641 * 14 13 3 33 33 H 1.09008 * 109.46923 * 65.62483 * 14 13 3 34 34 H 1.08001 * 119.91940 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.01178 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.47156 * 300.00744 * 20 19 18 37 37 H 1.09001 * 109.46465 * 60.00233 * 20 19 18 38 38 H 1.08995 * 109.47335 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47770 * 300.00652 * 23 22 21 40 40 H 1.09007 * 109.47027 * 60.00505 * 23 22 21 41 41 H 1.08998 * 109.47443 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.98387 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8410 5 6 3.5417 1.4443 0.1257 6 1 4.1481 1.8885 -0.6499 7 6 4.1418 0.8789 1.2308 8 7 3.4035 0.3384 2.1755 9 14 6.0032 0.8817 1.3870 10 1 6.5986 1.5462 0.1998 11 1 6.3957 1.6178 2.6156 12 1 6.4953 -0.5169 1.4694 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5538 -1.0810 15 6 1.0235 4.1771 -2.3464 16 6 -0.3393 4.3369 -2.5173 17 6 -0.8316 4.9083 -3.6753 18 6 0.0429 5.3227 -4.6702 19 16 -0.5814 6.0510 -6.1482 20 6 -2.3762 6.0324 -5.8857 21 6 1.4162 5.1601 -4.4973 22 8 2.2782 5.5638 -5.4689 23 6 3.6718 5.3663 -5.2227 24 6 1.9014 4.5927 -3.3309 25 1 -0.3634 -1.0275 0.0090 26 1 -0.3633 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8945 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8256 -0.0591 2.9532 31 1 2.2959 1.8667 -1.9983 32 1 0.8774 3.7753 -0.2556 33 1 2.5408 3.9614 -0.8613 34 1 -1.0207 4.0144 -1.7439 35 1 -1.8965 5.0323 -3.8061 36 1 -2.7131 5.0046 -5.7504 37 1 -2.6194 6.6144 -4.9968 38 1 -2.8747 6.4666 -6.7523 39 1 3.9637 5.9136 -4.3264 40 1 3.8686 4.3037 -5.0796 41 1 4.2465 5.7311 -6.0740 42 1 2.9654 4.4707 -3.1919 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184093154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:44 Heat of formation + Delta-G solvation = -37.151935 kcal Electronic energy + Delta-G solvation = -21401.401119 eV Core-core repulsion = 18278.930949 eV Total energy + Delta-G solvation = -3122.470170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11923 -38.85055 -37.69302 -34.77195 -33.40668 -31.76265 -31.19980 -29.69010 -28.72905 -27.95445 -26.06458 -24.33831 -23.13979 -22.34123 -21.39554 -19.19267 -18.70942 -17.93043 -17.15829 -16.84000 -16.70323 -16.10459 -15.87535 -15.52223 -15.37976 -14.90631 -14.74037 -14.58064 -14.36776 -13.86806 -13.70634 -13.45802 -13.26704 -13.14671 -13.08906 -12.90132 -12.76907 -12.62586 -12.39003 -12.12489 -11.97669 -11.94940 -11.51303 -11.39220 -11.08447 -10.99731 -10.55853 -10.47077 -9.47585 -9.08101 -8.17502 -8.06362 -6.28316 0.15521 0.42649 0.63531 1.36573 1.39809 1.48903 1.59023 2.31895 2.39302 2.63505 3.13990 3.67667 3.79058 4.02665 4.11061 4.29330 4.32926 4.34326 4.35767 4.37322 4.49281 4.56852 4.64978 4.69758 4.76957 4.82168 4.90262 4.93190 4.94652 5.13410 5.17894 5.23766 5.43422 5.51144 5.61991 5.68926 5.73821 5.77282 6.09474 6.18811 6.32023 6.36365 6.76973 6.98865 7.43141 8.90472 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.003696 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.089501 B = 7573.195538 C = 8697.405795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.559 4.559 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.671 5.671 14 C 0.108 3.892 15 C -0.039 4.039 16 C -0.123 4.123 17 C -0.092 4.092 18 C -0.136 4.136 19 S -0.136 6.136 20 C -0.141 4.141 21 C 0.131 3.869 22 O -0.323 6.323 23 C 0.020 3.980 24 C -0.191 4.191 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.328 0.672 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.124 0.876 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 10.950 -14.301 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.599 4.599 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.300 5.300 14 C -0.021 4.021 15 C -0.042 4.042 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.249 4.249 19 S 0.104 5.896 20 C -0.309 4.309 21 C 0.081 3.919 22 O -0.237 6.237 23 C -0.074 4.074 24 C -0.212 4.212 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.144 0.856 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.335 11.301 -15.243 20.725 hybrid contribution 1.835 -0.587 1.932 2.729 sum -6.500 10.714 -13.311 18.282 Atomic orbital electron populations 1.21559 0.96369 0.99714 1.00595 1.21355 0.94463 0.98301 0.99958 1.18957 0.91684 0.91583 0.86443 0.97845 1.22189 0.94042 1.38106 1.05528 0.93185 1.25644 1.01982 0.94766 0.95529 1.70004 1.36293 1.38796 1.09757 0.85650 0.81185 0.77731 0.77894 1.19447 1.20797 1.20647 1.60859 1.54467 1.06154 1.08499 1.20689 0.98439 0.89094 0.93910 1.19770 0.93888 0.95599 0.94962 1.21013 0.94569 1.00415 0.98348 1.21221 0.99707 0.98329 0.92321 1.21112 0.93280 1.09634 1.00858 1.85594 1.06675 1.76472 1.20815 1.23802 0.92315 1.06805 1.07950 1.18467 0.88911 0.96113 0.88404 1.86086 1.18255 1.78458 1.40878 1.23301 0.77808 1.02036 1.04280 1.21129 1.00725 1.05245 0.94100 0.93770 0.94905 0.92363 0.95497 0.92031 0.92877 0.85572 0.91280 0.95877 0.84540 0.82698 0.89020 0.88827 0.85562 0.92216 0.92472 0.85785 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.79 71.98 0.71 -4.27 16 2 C -0.10 -4.85 5.45 30.59 0.17 -4.69 16 3 C 0.22 10.84 1.97 44.17 0.09 10.93 16 4 H 0.00 0.20 7.70 -2.39 -0.02 0.18 16 5 C -0.56 -29.75 8.47 25.60 0.22 -29.53 16 6 H 0.05 2.63 7.73 -2.91 -0.02 2.61 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -51.25 11.29 21.45 0.24 -51.01 16 9 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.67 -27.50 5.67 -499.47 -2.83 -30.33 16 14 C 0.11 3.97 5.64 85.56 0.48 4.45 16 15 C -0.04 -1.24 5.44 -19.84 -0.11 -1.35 16 16 C -0.12 -3.42 9.69 22.27 0.22 -3.20 16 17 C -0.09 -2.25 9.36 22.39 0.21 -2.04 16 18 C -0.14 -3.69 6.12 22.67 0.14 -3.55 16 19 S -0.14 -3.11 22.05 -56.49 -1.25 -4.35 16 20 C -0.14 -1.85 9.15 113.37 1.04 -0.82 16 21 C 0.13 3.86 6.69 22.60 0.15 4.01 16 22 O -0.32 -8.88 9.87 -93.75 -0.93 -9.81 16 23 C 0.02 0.41 9.81 113.37 1.11 1.52 16 24 C -0.19 -5.78 8.69 22.34 0.19 -5.58 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 2.20 7.77 -2.38 -0.02 2.18 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 3.30 5.95 -2.39 -0.01 3.29 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.33 13.54 8.45 -89.69 -0.76 12.78 16 32 H 0.07 2.56 7.85 -2.39 -0.02 2.54 16 33 H 0.02 0.91 8.06 -2.38 -0.02 0.89 16 34 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.16 2.76 5.88 -2.91 -0.02 2.75 16 36 H 0.09 1.10 7.75 -2.39 -0.02 1.08 16 37 H 0.09 1.07 7.75 -2.39 -0.02 1.05 16 38 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.15 7.65 -2.39 -0.02 1.13 16 40 H 0.06 1.16 7.68 -2.38 -0.02 1.14 16 41 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.13 3.81 6.30 -2.91 -0.02 3.79 16 Total: -1.00 -61.43 354.89 2.57 -58.85 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.25 Total: 24.41 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 5.06 Total: -32.53 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.59 Total: -81.34 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.93 Total: -9.81 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.25 Total: -4.35 kcal Total: -61.43 2.57 -58.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.700 kcal (2) G-P(sol) polarization free energy of solvation -61.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds