Wall clock time and date at job start Tue Mar 31 2020 08:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00214 * 60.00480 * 5 3 2 8 8 N 1.31513 * 119.99981 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00099 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47566 * 270.00941 * 9 7 5 11 11 H 1.48503 * 109.46873 * 30.00897 * 9 7 5 12 12 H 1.48494 * 109.47087 * 150.00325 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38272 * 119.90204 * 90.00356 * 15 14 13 17 17 C 1.38210 * 120.16386 * 179.97438 * 16 15 14 18 18 C 1.38790 * 119.97493 * 0.02562 * 17 16 15 19 19 S 1.76193 * 120.09719 * 179.97438 * 18 17 16 20 20 C 1.81405 * 103.00014 * 0.02562 * 19 18 17 21 21 C 1.39381 * 119.80847 * 0.02562 * 18 17 16 22 22 O 1.36004 * 120.07648 * 179.97438 * 21 18 17 23 23 C 1.42911 * 116.99722 * 179.97438 * 22 21 18 24 24 C 1.38303 * 119.90607 * 269.72650 * 15 14 13 25 25 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 26 26 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 27 27 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 28 28 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 29 29 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 30 30 H 0.97003 * 120.00073 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 32 32 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 33 33 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 34 34 H 1.08000 * 119.91992 * 359.97438 * 16 15 14 35 35 H 1.07994 * 120.01146 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.46751 * 59.99510 * 20 19 18 37 37 H 1.08994 * 109.47258 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46763 * 300.00280 * 20 19 18 39 39 H 1.08996 * 109.47058 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47211 * 300.00297 * 23 22 21 41 41 H 1.08999 * 109.46664 * 60.00030 * 23 22 21 42 42 H 1.07995 * 119.98690 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4566 8 7 1.1734 2.3931 3.4788 9 14 2.7458 0.2330 2.7458 10 1 1.8847 -0.9768 2.7595 11 1 3.7488 0.1143 1.6571 12 1 3.4438 0.3587 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 2.4709 3.7667 -3.9166 17 6 2.0266 4.3351 -5.0955 18 6 1.2369 3.5975 -5.9664 19 16 0.6682 4.3190 -7.4699 20 6 1.3689 5.9912 -7.4106 21 6 0.8941 2.2846 -5.6479 22 8 0.1201 1.5570 -6.4971 23 6 -0.1909 0.2182 -6.1056 24 6 1.3493 1.7207 -4.4678 25 1 -0.3633 0.4301 -0.9333 26 1 -0.3634 -1.0233 0.0943 27 1 -0.3633 0.5934 0.8391 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3418 2.0847 4.3829 31 1 0.7157 1.8142 -1.5318 32 1 3.5769 2.2925 -2.0419 33 1 2.7408 0.7747 -2.4491 34 1 3.0851 4.3416 -3.2394 35 1 2.2932 5.3530 -5.3385 36 1 2.4559 5.9281 -7.3610 37 1 1.0768 6.5396 -8.3061 38 1 0.9946 6.5109 -6.5285 39 1 -0.8128 -0.2486 -6.8694 40 1 0.7320 -0.3504 -5.9905 41 1 -0.7293 0.2326 -5.1580 42 1 1.0899 0.7018 -4.2212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184093172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:48 Heat of formation + Delta-G solvation = -7.347511 kcal Electronic energy + Delta-G solvation = -21536.450981 eV Core-core repulsion = 18415.273228 eV Total energy + Delta-G solvation = -3121.177753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15816 -37.86393 -36.61809 -33.26879 -31.76979 -30.53634 -30.03510 -29.00307 -27.54639 -26.84326 -24.65259 -23.22421 -22.19596 -21.37765 -19.57526 -18.25211 -17.11490 -16.42301 -16.16217 -15.84028 -15.27705 -15.03706 -14.86313 -14.49831 -13.96753 -13.88703 -13.78482 -13.39462 -13.25471 -12.81391 -12.64340 -12.54840 -12.33809 -12.24523 -12.02677 -11.52380 -11.28956 -11.10390 -10.95039 -10.76174 -10.56100 -10.44948 -10.19856 -9.91818 -9.63121 -9.35993 -9.16047 -8.55533 -8.49255 -7.47927 -7.23044 -6.05550 -4.01626 1.16792 1.43984 1.46937 2.38338 3.17789 3.24029 3.33061 3.36411 3.66227 4.39016 4.71838 4.79061 4.87971 4.89088 5.01347 5.05975 5.15394 5.23503 5.26676 5.31835 5.39385 5.44557 5.50363 5.66710 5.81936 5.87085 5.94652 6.06954 6.12714 6.16086 6.26205 6.49368 6.68041 6.72030 6.74856 6.79027 6.95487 7.23809 7.26746 7.69371 7.86795 8.27504 8.68107 9.06360 9.57048 11.07780 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024099 B = 0.003543 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.610222 B = 7900.844263 C = 8564.115701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.034 0.966 5 C -0.490 4.490 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.297 1.297 13 N -0.664 5.664 14 C 0.091 3.909 15 C -0.032 4.032 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.126 4.126 19 S -0.104 6.104 20 C -0.151 4.151 21 C 0.144 3.856 22 O -0.310 6.310 23 C 0.027 3.973 24 C -0.187 4.187 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -0.223 -21.070 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.052 0.948 5 C -0.529 4.529 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.224 1.224 13 N -0.295 5.295 14 C -0.038 4.038 15 C -0.034 4.034 16 C -0.134 4.134 17 C -0.121 4.121 18 C -0.239 4.239 19 S 0.136 5.864 20 C -0.319 4.319 21 C 0.093 3.907 22 O -0.223 6.223 23 C -0.068 4.068 24 C -0.208 4.208 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.217 0.073 -21.824 21.825 hybrid contribution 1.183 -1.592 1.383 2.418 sum 1.400 -1.519 -20.441 20.545 Atomic orbital electron populations 1.21652 0.95775 0.99655 1.02453 1.22500 0.97275 1.01089 0.98927 1.19732 0.95975 0.88167 0.88511 0.94838 1.20881 1.31298 1.12762 0.87911 0.89994 1.24891 0.95565 0.96603 0.96124 1.69878 1.45100 1.40254 0.98643 0.86975 0.81138 0.83914 0.76878 1.20669 1.19549 1.22431 1.60758 1.03883 1.62558 1.02288 1.20997 0.97436 0.96956 0.88426 1.19845 0.94888 0.93817 0.94901 1.20907 1.01464 0.94847 0.96224 1.20971 0.97632 0.99143 0.94307 1.20843 1.07011 0.95247 1.00759 1.85521 1.66923 1.11053 1.22855 1.23694 1.04444 0.97175 1.06618 1.18266 0.92679 0.89888 0.89831 1.86109 1.65461 1.25942 1.44838 1.23069 1.00811 0.80952 1.01994 1.21058 1.03657 1.01209 0.94855 0.94171 0.95049 0.89956 0.94972 0.93207 0.92711 0.84823 0.90359 0.95293 0.85086 0.85401 0.89940 0.87661 0.89783 0.88255 0.92678 0.92394 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.40 37.16 0.35 -2.34 16 2 C -0.16 -3.30 5.23 -26.73 -0.14 -3.44 16 3 C 0.19 4.20 1.92 -68.86 -0.13 4.06 16 4 H 0.03 0.80 6.89 -51.93 -0.36 0.44 16 5 C -0.49 -13.32 7.86 -34.44 -0.27 -13.59 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.88 21.49 24.33 -169.99 -4.14 17.36 16 10 H -0.28 -6.68 6.91 56.52 0.39 -6.29 16 11 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 12 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 13 N -0.66 -13.11 6.25 -109.22 -0.68 -13.79 16 14 C 0.09 1.49 5.60 -4.98 -0.03 1.46 16 15 C -0.03 -0.47 5.36 -104.58 -0.56 -1.03 16 16 C -0.11 -1.59 9.69 -39.58 -0.38 -1.97 16 17 C -0.10 -1.24 9.36 -39.39 -0.37 -1.61 16 18 C -0.13 -1.72 6.12 -38.95 -0.24 -1.95 16 19 S -0.10 -1.24 22.05 -107.50 -2.37 -3.61 16 20 C -0.15 -1.20 9.15 101.05 0.92 -0.28 16 21 C 0.14 2.02 6.69 -39.07 -0.26 1.76 16 22 O -0.31 -4.08 9.87 -19.75 -0.19 -4.27 16 23 C 0.03 0.25 9.81 101.05 0.99 1.24 16 24 C -0.19 -2.59 8.69 -39.47 -0.34 -2.94 16 25 H 0.04 0.70 6.61 -51.93 -0.34 0.35 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.85 6.89 -51.92 -0.36 1.50 16 28 H 0.03 0.59 7.40 -51.93 -0.38 0.20 16 29 H 0.05 1.11 3.39 -51.93 -0.18 0.93 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.33 6.36 6.54 -39.29 -0.26 6.10 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 34 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.13 1.31 5.88 -52.49 -0.31 1.00 16 36 H 0.08 0.59 7.75 -51.92 -0.40 0.19 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.64 7.75 -51.92 -0.40 0.24 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 41 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 42 H 0.13 1.60 6.30 -52.49 -0.33 1.27 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -30.69 342.27 -8.22 -38.90 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.21 Total: 5.29 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -0.56 Total: -18.77 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.09 Total: -40.06 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.19 Total: -4.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.36 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.37 Total: -3.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.69 -8.22 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.557 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds