Wall clock time and date at job start Tue Mar 31 2020 08:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00214 * 60.00480 * 5 3 2 8 8 N 1.31513 * 119.99981 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00099 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47566 * 270.00941 * 9 7 5 11 11 H 1.48503 * 109.46873 * 30.00897 * 9 7 5 12 12 H 1.48494 * 109.47087 * 150.00325 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38272 * 119.90204 * 90.00356 * 15 14 13 17 17 C 1.38210 * 120.16386 * 179.97438 * 16 15 14 18 18 C 1.38790 * 119.97493 * 0.02562 * 17 16 15 19 19 S 1.76193 * 120.09719 * 179.97438 * 18 17 16 20 20 C 1.81405 * 103.00014 * 0.02562 * 19 18 17 21 21 C 1.39381 * 119.80847 * 0.02562 * 18 17 16 22 22 O 1.36004 * 120.07648 * 179.97438 * 21 18 17 23 23 C 1.42911 * 116.99722 * 179.97438 * 22 21 18 24 24 C 1.38303 * 119.90607 * 269.72650 * 15 14 13 25 25 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 26 26 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 27 27 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 28 28 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 29 29 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 30 30 H 0.97003 * 120.00073 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 32 32 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 33 33 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 34 34 H 1.08000 * 119.91992 * 359.97438 * 16 15 14 35 35 H 1.07994 * 120.01146 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.46751 * 59.99510 * 20 19 18 37 37 H 1.08994 * 109.47258 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46763 * 300.00280 * 20 19 18 39 39 H 1.08996 * 109.47058 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47211 * 300.00297 * 23 22 21 41 41 H 1.08999 * 109.46664 * 60.00030 * 23 22 21 42 42 H 1.07995 * 119.98690 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4566 8 7 1.1734 2.3931 3.4788 9 14 2.7458 0.2330 2.7458 10 1 1.8847 -0.9768 2.7595 11 1 3.7488 0.1143 1.6571 12 1 3.4438 0.3587 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 2.4709 3.7667 -3.9166 17 6 2.0266 4.3351 -5.0955 18 6 1.2369 3.5975 -5.9664 19 16 0.6682 4.3190 -7.4699 20 6 1.3689 5.9912 -7.4106 21 6 0.8941 2.2846 -5.6479 22 8 0.1201 1.5570 -6.4971 23 6 -0.1909 0.2182 -6.1056 24 6 1.3493 1.7207 -4.4678 25 1 -0.3633 0.4301 -0.9333 26 1 -0.3634 -1.0233 0.0943 27 1 -0.3633 0.5934 0.8391 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3418 2.0847 4.3829 31 1 0.7157 1.8142 -1.5318 32 1 3.5769 2.2925 -2.0419 33 1 2.7408 0.7747 -2.4491 34 1 3.0851 4.3416 -3.2394 35 1 2.2932 5.3530 -5.3385 36 1 2.4559 5.9281 -7.3610 37 1 1.0768 6.5396 -8.3061 38 1 0.9946 6.5109 -6.5285 39 1 -0.8128 -0.2486 -6.8694 40 1 0.7320 -0.3504 -5.9905 41 1 -0.7293 0.2326 -5.1580 42 1 1.0899 0.7018 -4.2212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184093172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:47 Heat of formation + Delta-G solvation = -27.206184 kcal Electronic energy + Delta-G solvation = -21537.312117 eV Core-core repulsion = 18415.273228 eV Total energy + Delta-G solvation = -3122.038890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.14592 -39.05862 -38.04515 -34.82872 -33.59150 -31.69294 -31.15348 -29.71833 -28.92952 -28.07678 -26.03361 -24.99901 -23.17083 -22.51767 -21.34824 -19.26587 -18.47253 -17.96741 -17.27743 -16.94624 -16.71407 -16.45196 -15.97662 -15.51773 -15.38350 -15.01191 -14.80440 -14.59495 -14.58344 -14.36807 -14.15051 -13.58079 -13.52034 -13.31270 -13.06197 -12.81023 -12.64764 -12.53496 -12.44627 -12.20387 -11.98088 -11.86816 -11.67090 -11.26689 -11.14941 -11.06796 -10.69602 -10.57538 -9.48810 -9.01501 -8.22888 -8.19229 -6.22267 0.12157 0.40939 0.62038 1.30896 1.35883 1.45009 1.56534 2.32203 2.34740 2.59991 3.12289 3.59026 3.76766 3.86960 4.08767 4.25560 4.26863 4.30317 4.30386 4.34778 4.35063 4.37462 4.46038 4.46736 4.59362 4.66234 4.72217 4.87184 4.89374 4.91902 5.06000 5.11152 5.14979 5.20490 5.28677 5.58038 5.63824 5.70984 5.74268 6.04514 6.33295 6.70678 6.73141 6.83411 7.40859 8.94904 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024099 B = 0.003543 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.610222 B = 7900.844263 C = 8564.115701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.028 0.972 5 C -0.485 4.485 6 H 0.034 0.966 7 C 0.013 3.987 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.250 1.250 12 H -0.303 1.303 13 N -0.676 5.676 14 C 0.097 3.903 15 C -0.047 4.047 16 C -0.125 4.125 17 C -0.096 4.096 18 C -0.136 4.136 19 S -0.134 6.134 20 C -0.141 4.141 21 C 0.131 3.869 22 O -0.324 6.324 23 C 0.018 3.982 24 C -0.187 4.187 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.263 0.737 31 H 0.336 0.664 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.489 -1.519 -23.247 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.081 3.919 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.053 0.947 7 C -0.183 4.183 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.174 1.174 12 H -0.231 1.231 13 N -0.308 5.308 14 C -0.031 4.031 15 C -0.049 4.049 16 C -0.145 4.145 17 C -0.119 4.119 18 C -0.249 4.249 19 S 0.107 5.893 20 C -0.310 4.310 21 C 0.081 3.919 22 O -0.238 6.238 23 C -0.076 4.076 24 C -0.208 4.208 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.973 -1.230 -24.044 24.095 hybrid contribution 0.871 -1.058 1.919 2.358 sum 1.843 -2.288 -22.125 22.320 Atomic orbital electron populations 1.21573 0.95123 1.00638 1.01750 1.22419 0.97889 0.99338 0.99927 1.19488 0.95103 0.89196 0.88160 0.95378 1.21089 1.29960 1.11413 0.89961 0.94748 1.25674 0.97044 0.99801 0.95801 1.70042 1.47458 1.42592 0.99174 0.85958 0.79839 0.80323 0.76877 1.19362 1.17369 1.23060 1.60570 1.04879 1.62800 1.02519 1.20948 0.96315 0.97933 0.87949 1.19743 0.96189 0.94398 0.94614 1.21053 1.01792 0.94828 0.96874 1.21210 0.96998 1.00115 0.93609 1.21144 1.06770 0.95521 1.01420 1.85586 1.67514 1.14075 1.22170 1.23802 1.04920 0.94304 1.07939 1.18471 0.92951 0.90410 0.90088 1.86103 1.65203 1.27443 1.45017 1.23339 1.01724 0.79544 1.02976 1.21157 1.03216 1.01779 0.94632 0.92357 0.92527 0.93872 0.91563 0.94349 0.92814 0.84481 0.90616 0.93907 0.84856 0.83087 0.88802 0.85558 0.89241 0.86030 0.91728 0.92221 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.40 71.98 0.68 -4.28 16 2 C -0.16 -6.10 5.23 30.60 0.16 -5.94 16 3 C 0.19 8.44 1.92 44.17 0.08 8.52 16 4 H 0.03 1.29 6.89 -2.39 -0.02 1.28 16 5 C -0.49 -27.04 7.86 25.60 0.20 -26.84 16 6 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 7 C 0.01 0.76 5.45 84.65 0.46 1.22 16 8 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 9 Si 0.94 44.15 24.33 68.60 1.67 45.82 16 10 H -0.27 -11.93 6.91 99.48 0.69 -11.24 16 11 H -0.25 -10.77 6.53 99.48 0.65 -10.12 16 12 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 13 N -0.68 -26.14 6.25 -499.45 -3.12 -29.26 16 14 C 0.10 3.02 5.60 85.56 0.48 3.50 16 15 C -0.05 -1.32 5.36 -19.84 -0.11 -1.42 16 16 C -0.13 -3.36 9.69 22.27 0.22 -3.14 16 17 C -0.10 -2.30 9.36 22.40 0.21 -2.09 16 18 C -0.14 -3.53 6.12 22.68 0.14 -3.39 16 19 S -0.13 -2.99 22.05 -56.49 -1.25 -4.24 16 20 C -0.14 -1.89 9.15 113.37 1.04 -0.86 16 21 C 0.13 3.53 6.69 22.60 0.15 3.68 16 22 O -0.32 -8.07 9.87 -93.59 -0.92 -8.99 16 23 C 0.02 0.31 9.81 113.37 1.11 1.42 16 24 C -0.19 -4.88 8.69 22.34 0.19 -4.69 16 25 H 0.06 1.92 6.61 -2.39 -0.02 1.90 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.93 6.89 -2.38 -0.02 1.92 16 28 H 0.07 2.15 7.40 -2.39 -0.02 2.13 16 29 H 0.04 1.59 3.39 -2.39 -0.01 1.58 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 31 H 0.34 12.48 6.54 -89.69 -0.59 11.89 16 32 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.04 1.21 7.32 -2.38 -0.02 1.20 16 34 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.15 2.77 5.88 -2.91 -0.02 2.75 16 36 H 0.09 1.08 7.75 -2.39 -0.02 1.06 16 37 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.14 7.75 -2.39 -0.02 1.12 16 39 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.06 0.94 7.65 -2.39 -0.02 0.93 16 41 H 0.06 0.97 7.68 -2.39 -0.02 0.95 16 42 H 0.14 3.20 6.30 -2.91 -0.02 3.18 16 Total: -1.00 -68.15 342.27 2.05 -66.10 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.36 Total: 23.75 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 5.02 Total: -34.30 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.82 Total: -88.14 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.92 Total: -8.99 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.67 Total: 45.82 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.25 Total: -4.24 kcal Total: -68.15 2.05 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.890 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds