Wall clock time and date at job start Tue Mar 31 2020 08:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 H 1.08996 * 109.47685 * 54.99727 * 3 2 1 5 5 C 1.50693 * 109.47128 * 175.00122 * 3 2 1 6 6 H 1.08004 * 120.00593 * 119.99718 * 5 3 2 7 7 C 1.37880 * 120.00038 * 299.99378 * 5 3 2 8 8 N 1.31514 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00162 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46861 * 90.00091 * 9 7 5 11 11 H 1.48503 * 109.47269 * 210.00057 * 9 7 5 12 12 H 1.48499 * 109.47228 * 330.00369 * 9 7 5 13 13 N 1.46501 * 109.46546 * 294.99540 * 3 2 1 14 14 C 1.34783 * 119.99728 * 85.00276 * 13 3 2 15 15 O 1.21280 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99776 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.46743 * 180.02562 * 16 14 13 18 18 C 1.38176 * 120.01201 * 265.23029 * 17 16 14 19 19 C 1.38434 * 120.02617 * 180.25718 * 18 17 16 20 20 F 1.35104 * 119.97001 * 179.77098 * 19 18 17 21 21 C 1.38475 * 120.05911 * 359.74739 * 19 18 17 22 22 C 1.38123 * 120.03389 * 0.02562 * 21 19 18 23 23 C 1.38678 * 120.01285 * 85.00590 * 17 16 14 24 24 O 1.35943 * 120.03279 * 0.02562 * 23 17 16 25 25 C 1.42905 * 116.99943 * 179.72323 * 24 23 17 26 26 H 1.09005 * 109.46610 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47122 * 299.99981 * 1 2 3 28 28 H 1.08997 * 109.47003 * 60.00449 * 1 2 3 29 29 H 1.08993 * 109.47388 * 239.99401 * 2 1 3 30 30 H 1.09005 * 109.47302 * 119.99428 * 2 1 3 31 31 H 0.96992 * 119.99943 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00466 * 265.00003 * 13 3 2 33 33 H 1.09004 * 109.47011 * 60.00508 * 16 14 13 34 34 H 1.08997 * 109.47266 * 300.00282 * 16 14 13 35 35 H 1.07996 * 119.99187 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.98413 * 180.02562 * 21 19 18 37 37 H 1.07997 * 120.02100 * 179.97438 * 22 21 19 38 38 H 1.09001 * 109.47103 * 60.00643 * 25 24 23 39 39 H 1.09004 * 109.47054 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.47187 * 300.00203 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.4427 2.1132 2.0836 11 1 6.4391 -0.3108 2.1547 12 1 6.6131 0.8395 0.0270 13 7 1.6524 2.0973 -1.2519 14 6 0.4350 2.6642 -1.3671 15 8 -0.3397 2.6318 -0.4346 16 6 0.0366 3.3383 -2.6547 17 6 -1.3610 3.8867 -2.5230 18 6 -2.4398 3.1413 -2.9588 19 6 -3.7232 3.6470 -2.8428 20 9 -4.7768 2.9191 -3.2735 21 6 -3.9282 4.8978 -2.2853 22 6 -2.8520 5.6431 -1.8446 23 6 -1.5651 5.1375 -1.9602 24 8 -0.5050 5.8702 -1.5274 25 6 -0.7891 7.1523 -0.9638 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.8292 -0.0615 2.9495 32 1 2.2719 2.1230 -1.9979 33 1 0.0679 2.6141 -3.4688 34 1 0.7280 4.1538 -2.8670 35 1 -2.2814 2.1655 -3.3934 36 1 -4.9300 5.2910 -2.1950 37 1 -3.0120 6.6188 -1.4102 38 1 -1.4361 7.0319 -0.0949 39 1 0.1423 7.6303 -0.6602 40 1 -1.2902 7.7728 -1.7068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186988059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:04 Heat of formation + Delta-G solvation = -103.352481 kcal Electronic energy + Delta-G solvation = -23958.074461 eV Core-core repulsion = 20266.520444 eV Total energy + Delta-G solvation = -3691.554017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.77354 -40.35170 -38.75941 -37.19375 -35.01993 -32.84267 -32.27128 -30.86338 -29.83328 -28.10770 -27.18440 -26.43524 -23.12005 -22.39099 -21.96699 -20.17310 -19.23719 -18.09611 -17.24133 -16.99530 -16.85902 -15.94039 -15.51113 -15.35636 -15.16196 -14.73602 -14.68662 -14.46002 -14.15468 -13.46051 -13.06701 -12.98814 -12.81387 -12.57426 -12.33896 -12.16364 -11.90224 -11.58278 -11.23345 -11.17822 -10.95641 -10.94043 -10.83531 -10.80305 -10.28829 -10.12678 -9.58354 -9.20088 -9.00425 -8.78717 -8.46006 -8.01322 -7.74000 -6.09421 -4.18564 1.13030 1.24495 3.23340 3.25734 3.32461 3.34190 3.50655 3.52924 4.21089 4.30654 4.46934 4.59780 4.67454 4.95434 5.01970 5.09367 5.21779 5.23852 5.40455 5.46369 5.52170 5.62957 5.71699 5.99194 6.07110 6.09198 6.34043 6.43456 6.50272 6.70022 6.71643 7.08366 7.24749 7.32487 7.42230 7.53360 7.66161 7.78741 7.95298 8.22469 8.74713 8.82754 9.23437 9.49316 10.95894 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021267 B = 0.003979 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.252893 B = 7035.920106 C = 7853.280640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.507 3.493 15 O -0.542 6.542 16 C -0.101 4.101 17 C -0.056 4.056 18 C -0.103 4.103 19 C 0.058 3.942 20 F -0.144 7.144 21 C -0.118 4.118 22 C -0.183 4.183 23 C 0.136 3.864 24 O -0.305 6.305 25 C 0.027 3.973 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 10.576 -10.679 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.291 3.709 15 O -0.420 6.420 16 C -0.141 4.141 17 C -0.058 4.058 18 C -0.122 4.122 19 C 0.039 3.961 20 F -0.123 7.123 21 C -0.137 4.137 22 C -0.202 4.202 23 C 0.091 3.909 24 O -0.218 6.218 25 C -0.068 4.068 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.280 10.369 -9.808 17.589 hybrid contribution 0.886 0.021 -0.153 0.899 sum -9.394 10.390 -9.961 17.188 Atomic orbital electron populations 1.21830 0.98354 0.97913 1.01248 1.21932 0.92590 0.99916 1.02180 1.18741 0.94050 0.89087 0.81147 0.93444 1.21251 0.90828 1.38830 1.06207 0.92121 1.24886 0.98507 0.94862 0.95433 1.69898 1.35072 1.37699 1.09353 0.86476 0.85005 0.77599 0.78166 1.20618 1.21115 1.19858 1.46459 1.14615 1.56312 1.18481 1.20099 0.82807 0.79264 0.88721 1.90676 1.51408 1.59520 1.40416 1.20609 0.93671 1.01503 0.98356 1.18504 0.95124 0.91766 1.00361 1.20808 0.90115 1.00187 1.01072 1.17445 0.83758 0.91554 1.03367 1.91472 1.55687 1.77134 1.88012 1.20817 0.99831 0.93365 0.99659 1.20990 0.91268 1.01769 1.06134 1.18773 0.86412 0.91392 0.94373 1.86142 1.30859 1.29963 1.74821 1.23077 1.03480 0.82554 0.97671 0.95980 0.93236 0.94254 0.95096 0.88396 0.92626 0.78062 0.88486 0.87878 0.84232 0.84796 0.84656 0.92519 0.88093 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.83 11.29 55.43 0.63 -24.20 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -14.60 5.02 -54.93 -0.28 -14.88 16 14 C 0.51 9.94 6.39 -10.98 -0.07 9.87 16 15 O -0.54 -12.68 13.17 5.56 0.07 -12.61 16 16 C -0.10 -1.47 5.55 -29.03 -0.16 -1.63 16 17 C -0.06 -0.83 4.39 -104.48 -0.46 -1.29 16 18 C -0.10 -1.44 9.66 -39.53 -0.38 -1.82 16 19 C 0.06 0.79 7.30 -39.42 -0.29 0.50 16 20 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 21 C -0.12 -1.41 10.02 -39.54 -0.40 -1.80 16 22 C -0.18 -2.19 9.04 -39.44 -0.36 -2.55 16 23 C 0.14 1.95 6.66 -39.23 -0.26 1.69 16 24 O -0.31 -4.32 9.63 -19.56 -0.19 -4.51 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.86 8.54 -40.82 -0.35 6.51 16 33 H 0.10 1.13 8.05 -51.93 -0.42 0.72 16 34 H 0.10 1.36 7.69 -51.93 -0.40 0.96 16 35 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.14 1.23 6.30 -52.49 -0.33 0.90 16 38 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -31.74 335.78 -6.80 -38.54 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.35 Total: 6.78 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.76 Total: -7.81 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.35 Total: -39.08 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.12 Total: -17.12 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.74 -6.80 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186988059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.813 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds