Wall clock time and date at job start Tue Mar 31 2020 07:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47078 * 2 1 4 4 C 1.52997 * 109.46952 * 165.36002 * 3 2 1 5 5 C 1.53001 * 109.46804 * 45.36281 * 3 2 1 6 6 N 1.46494 * 109.47025 * 285.36083 * 3 2 1 7 7 C 1.46500 * 120.00101 * 129.88141 * 6 3 2 8 8 C 1.50703 * 109.47322 * 260.34501 * 7 6 3 9 9 H 1.07997 * 119.99952 * 359.63207 * 8 7 6 10 10 C 1.37880 * 120.00106 * 179.62236 * 8 7 6 11 11 N 1.31510 * 119.99948 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99714 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47318 * 60.00702 * 12 10 8 14 14 H 1.48503 * 109.46835 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47343 * 300.00313 * 12 10 8 16 16 C 1.34777 * 120.00353 * 309.88414 * 6 3 2 17 17 O 1.21701 * 120.00076 * 187.12337 * 16 6 3 18 18 C 1.46586 * 119.99728 * 7.11465 * 16 6 3 19 19 C 1.36647 * 125.45370 * 142.25613 * 18 16 6 20 20 C 1.37474 * 113.29817 * 180.26374 * 19 18 16 21 21 C 1.33817 * 115.09888 * 0.02562 * 20 19 18 22 22 C 1.50695 * 124.52643 * 179.97438 * 21 20 19 23 23 S 1.70626 * 110.95511 * 359.97438 * 21 20 19 24 24 H 1.08989 * 109.47292 * 68.48121 * 1 2 3 25 25 H 1.08998 * 109.46988 * 188.48582 * 1 2 3 26 26 H 1.09007 * 109.46602 * 308.47912 * 1 2 3 27 27 H 1.08999 * 109.46684 * 240.00384 * 2 1 3 28 28 H 1.09001 * 109.47510 * 120.00287 * 2 1 3 29 29 H 1.09000 * 109.46963 * 210.13688 * 4 3 2 30 30 H 1.08996 * 109.47436 * 330.14459 * 4 3 2 31 31 H 1.09008 * 109.47000 * 90.14016 * 4 3 2 32 32 H 1.09001 * 109.46742 * 296.51825 * 5 3 2 33 33 H 1.08993 * 109.47610 * 56.52295 * 5 3 2 34 34 H 1.09000 * 109.46324 * 176.52469 * 5 3 2 35 35 H 1.09001 * 109.46999 * 20.34005 * 7 6 3 36 36 H 1.09004 * 109.47490 * 140.34408 * 7 6 3 37 37 H 0.97004 * 119.99814 * 179.97438 * 11 10 8 38 38 H 1.07996 * 123.35414 * 0.28612 * 19 18 16 39 39 H 1.07993 * 122.45302 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47333 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46898 * 300.01626 * 22 21 20 42 42 H 1.09000 * 109.46749 * 60.01426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5259 1.4581 0.3646 5 6 1.2544 2.2612 1.0265 6 7 1.8579 2.0249 -1.3318 7 6 1.2050 3.3281 -1.4784 8 6 -0.2355 3.1269 -1.8726 9 1 -0.6242 2.1283 -2.0069 10 6 -1.0574 4.2178 -2.0617 11 7 -0.5841 5.4338 -1.8985 12 14 -2.8432 3.9682 -2.5496 13 1 -3.5360 3.1743 -1.5032 14 1 -3.5072 5.2891 -2.6900 15 1 -2.9060 3.2430 -3.8440 16 6 2.2908 1.3617 -2.4223 17 8 2.2581 1.8987 -3.5140 18 6 2.8011 -0.0064 -2.2935 19 6 2.5984 -1.0159 -3.1919 20 6 3.1859 -2.2016 -2.8192 21 6 3.8467 -2.1667 -1.6561 22 6 4.5668 -3.3422 -1.0472 23 16 3.7653 -0.6135 -0.9543 24 1 -0.3633 0.3769 -0.9559 25 1 -0.3633 -1.0164 0.1516 26 1 -0.3633 0.6395 0.8046 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7648 2.3908 0.8755 30 1 3.7477 0.6169 1.0212 31 1 4.1236 1.3777 -0.5434 32 1 0.2055 2.3016 0.7329 33 1 1.3396 1.7927 2.0069 34 1 1.6586 3.2725 1.0706 35 1 1.2508 3.8660 -0.5314 36 1 1.7154 3.9056 -2.2493 37 1 -1.1622 6.2013 -2.0318 38 1 2.0333 -0.8944 -4.1041 39 1 3.1190 -3.0958 -3.4210 40 1 5.0182 -3.0417 -0.1016 41 1 3.8575 -4.1508 -0.8703 42 1 5.3452 -3.6843 -1.7291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187515385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:35 Heat of formation + Delta-G solvation = 28.053770 kcal Electronic energy + Delta-G solvation = -23316.865070 eV Core-core repulsion = 20197.222431 eV Total energy + Delta-G solvation = -3119.642638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01701 -37.74346 -36.67274 -33.37750 -31.91541 -31.75315 -30.01063 -28.86875 -26.54990 -26.30301 -23.77156 -23.14542 -22.62308 -21.02018 -19.35214 -18.23280 -16.62692 -16.35552 -15.96471 -15.18359 -15.00128 -14.54094 -14.47113 -14.07521 -13.89637 -13.68868 -13.31112 -12.99438 -12.78039 -12.41455 -12.30882 -12.23779 -12.08504 -11.82598 -11.64131 -11.35451 -11.12042 -11.04945 -10.90450 -10.67184 -10.50585 -10.39780 -10.08378 -10.00196 -9.87063 -9.54739 -9.04418 -8.39189 -8.30949 -7.71346 -7.56641 -6.01321 -4.04225 0.90982 1.73765 2.20217 2.77693 3.33619 3.38169 3.41369 3.68472 3.95139 4.47167 4.89522 4.94754 5.03631 5.18813 5.21285 5.31944 5.35631 5.42426 5.54091 5.56610 5.70844 5.74014 5.84293 5.89184 6.01050 6.05105 6.14025 6.17465 6.27442 6.30594 6.45095 6.47929 6.56252 6.65852 6.77965 6.92274 7.12505 7.47831 7.57737 7.96638 8.25336 8.42060 8.92057 9.08587 9.59794 11.06841 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.005653 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.419459 B = 4952.263087 C = 5241.112536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.170 4.170 3 C 0.161 3.839 4 C -0.177 4.177 5 C -0.147 4.147 6 N -0.580 5.580 7 C 0.243 3.757 8 C -0.517 4.517 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.579 3.421 17 O -0.526 6.526 18 C -0.252 4.252 19 C -0.072 4.072 20 C -0.159 4.159 21 C -0.258 4.258 22 C -0.078 4.078 23 S 0.247 5.753 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 -14.636 7.526 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.209 4.209 3 C 0.075 3.925 4 C -0.238 4.238 5 C -0.204 4.204 6 N -0.312 5.312 7 C 0.125 3.875 8 C -0.556 4.556 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.364 3.636 17 O -0.404 6.404 18 C -0.372 4.372 19 C -0.103 4.103 20 C -0.190 4.190 21 C -0.376 4.376 22 C -0.136 4.136 23 S 0.518 5.482 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.634 -13.530 8.247 18.544 hybrid contribution -1.626 -0.846 -1.699 2.500 sum 8.008 -14.376 6.548 17.711 Atomic orbital electron populations 1.21861 0.94945 1.00246 1.03550 1.23221 0.97810 0.96059 1.03845 1.20410 0.93645 0.93762 0.84693 1.22520 0.96496 1.02991 1.01806 1.22175 1.02754 0.99194 0.96324 1.48289 1.57261 1.22079 1.03554 1.19402 0.92056 0.77798 0.98290 1.21377 0.94694 0.92859 1.46657 0.92370 1.24887 0.98631 0.95026 0.95404 1.69915 1.36155 0.97729 1.49695 0.86631 0.84786 0.77214 0.79246 1.20267 1.21268 1.20254 1.16870 0.78431 0.83373 0.84921 1.90801 1.55893 1.67520 1.26156 1.24861 1.11221 1.00084 1.01042 1.20598 0.99478 0.91139 0.99122 1.19738 1.02600 0.99065 0.97641 1.25074 1.05881 1.04968 1.01639 1.20259 0.99241 0.94221 0.99921 1.84689 1.46930 0.98089 1.18483 0.91655 0.93987 0.92050 0.89116 0.91173 0.90063 0.90547 0.91716 0.89398 0.92544 0.91750 0.93634 0.94531 0.92769 0.83786 0.85213 0.91870 0.91029 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.37 37.16 0.35 -2.07 16 2 C -0.17 -2.57 3.47 -26.73 -0.09 -2.66 16 3 C 0.16 2.65 0.75 -131.82 -0.10 2.55 16 4 C -0.18 -2.38 7.38 37.16 0.27 -2.10 16 5 C -0.15 -2.38 6.17 37.16 0.23 -2.15 16 6 N -0.58 -12.34 2.37 -161.74 -0.38 -12.73 16 7 C 0.24 6.20 4.49 -5.19 -0.02 6.18 16 8 C -0.52 -14.28 8.85 -34.44 -0.30 -14.58 16 9 H 0.06 1.62 6.53 -52.49 -0.34 1.28 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.58 12.88 6.73 -12.89 -0.09 12.80 16 17 O -0.53 -14.01 16.75 5.19 0.09 -13.92 16 18 C -0.25 -4.49 3.95 -36.79 -0.15 -4.63 16 19 C -0.07 -1.17 10.13 -40.43 -0.41 -1.58 16 20 C -0.16 -2.14 10.00 -41.41 -0.41 -2.55 16 21 C -0.26 -3.17 6.28 -35.86 -0.23 -3.39 16 22 C -0.08 -0.69 10.33 36.00 0.37 -0.32 16 23 S 0.25 3.26 12.66 -107.50 -1.36 1.90 16 24 H 0.06 1.28 6.86 -51.94 -0.36 0.93 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.97 5.84 -51.92 -0.30 0.66 16 27 H 0.09 1.44 2.54 -28.98 -0.07 1.37 16 28 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 29 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 30 H 0.08 0.81 6.50 -48.17 -0.31 0.50 16 31 H 0.06 0.94 5.18 -27.62 -0.14 0.80 16 32 H 0.09 1.65 5.73 -51.93 -0.30 1.35 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.08 6.67 -51.93 -0.35 0.73 16 35 H 0.05 1.14 5.59 -51.93 -0.29 0.85 16 36 H 0.04 1.07 7.63 -51.93 -0.40 0.68 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -32.01 328.75 -7.41 -39.43 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.75 Total: 1.86 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.67 Total: -12.85 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.35 Total: -38.17 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.36 Total: 1.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.01 -7.41 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187515385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.480 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds