Wall clock time and date at job start Tue Mar 31 2020 07:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47078 * 2 1 4 4 C 1.52997 * 109.46952 * 165.36002 * 3 2 1 5 5 C 1.53001 * 109.46804 * 45.36281 * 3 2 1 6 6 N 1.46494 * 109.47025 * 285.36083 * 3 2 1 7 7 C 1.46500 * 120.00101 * 129.88141 * 6 3 2 8 8 C 1.50703 * 109.47322 * 260.34501 * 7 6 3 9 9 H 1.07997 * 119.99952 * 359.63207 * 8 7 6 10 10 C 1.37880 * 120.00106 * 179.62236 * 8 7 6 11 11 N 1.31510 * 119.99948 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99714 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47318 * 60.00702 * 12 10 8 14 14 H 1.48503 * 109.46835 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47343 * 300.00313 * 12 10 8 16 16 C 1.34777 * 120.00353 * 309.88414 * 6 3 2 17 17 O 1.21701 * 120.00076 * 187.12337 * 16 6 3 18 18 C 1.46586 * 119.99728 * 7.11465 * 16 6 3 19 19 C 1.36647 * 125.45370 * 142.25613 * 18 16 6 20 20 C 1.37474 * 113.29817 * 180.26374 * 19 18 16 21 21 C 1.33817 * 115.09888 * 0.02562 * 20 19 18 22 22 C 1.50695 * 124.52643 * 179.97438 * 21 20 19 23 23 S 1.70626 * 110.95511 * 359.97438 * 21 20 19 24 24 H 1.08989 * 109.47292 * 68.48121 * 1 2 3 25 25 H 1.08998 * 109.46988 * 188.48582 * 1 2 3 26 26 H 1.09007 * 109.46602 * 308.47912 * 1 2 3 27 27 H 1.08999 * 109.46684 * 240.00384 * 2 1 3 28 28 H 1.09001 * 109.47510 * 120.00287 * 2 1 3 29 29 H 1.09000 * 109.46963 * 210.13688 * 4 3 2 30 30 H 1.08996 * 109.47436 * 330.14459 * 4 3 2 31 31 H 1.09008 * 109.47000 * 90.14016 * 4 3 2 32 32 H 1.09001 * 109.46742 * 296.51825 * 5 3 2 33 33 H 1.08993 * 109.47610 * 56.52295 * 5 3 2 34 34 H 1.09000 * 109.46324 * 176.52469 * 5 3 2 35 35 H 1.09001 * 109.46999 * 20.34005 * 7 6 3 36 36 H 1.09004 * 109.47490 * 140.34408 * 7 6 3 37 37 H 0.97004 * 119.99814 * 179.97438 * 11 10 8 38 38 H 1.07996 * 123.35414 * 0.28612 * 19 18 16 39 39 H 1.07993 * 122.45302 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47333 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46898 * 300.01626 * 22 21 20 42 42 H 1.09000 * 109.46749 * 60.01426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5259 1.4581 0.3646 5 6 1.2544 2.2612 1.0265 6 7 1.8579 2.0249 -1.3318 7 6 1.2050 3.3281 -1.4784 8 6 -0.2355 3.1269 -1.8726 9 1 -0.6242 2.1283 -2.0069 10 6 -1.0574 4.2178 -2.0617 11 7 -0.5841 5.4338 -1.8985 12 14 -2.8432 3.9682 -2.5496 13 1 -3.5360 3.1743 -1.5032 14 1 -3.5072 5.2891 -2.6900 15 1 -2.9060 3.2430 -3.8440 16 6 2.2908 1.3617 -2.4223 17 8 2.2581 1.8987 -3.5140 18 6 2.8011 -0.0064 -2.2935 19 6 2.5984 -1.0159 -3.1919 20 6 3.1859 -2.2016 -2.8192 21 6 3.8467 -2.1667 -1.6561 22 6 4.5668 -3.3422 -1.0472 23 16 3.7653 -0.6135 -0.9543 24 1 -0.3633 0.3769 -0.9559 25 1 -0.3633 -1.0164 0.1516 26 1 -0.3633 0.6395 0.8046 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7648 2.3908 0.8755 30 1 3.7477 0.6169 1.0212 31 1 4.1236 1.3777 -0.5434 32 1 0.2055 2.3016 0.7329 33 1 1.3396 1.7927 2.0069 34 1 1.6586 3.2725 1.0706 35 1 1.2508 3.8660 -0.5314 36 1 1.7154 3.9056 -2.2493 37 1 -1.1622 6.2013 -2.0318 38 1 2.0333 -0.8944 -4.1041 39 1 3.1190 -3.0958 -3.4210 40 1 5.0182 -3.0417 -0.1016 41 1 3.8575 -4.1508 -0.8703 42 1 5.3452 -3.6843 -1.7291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187515385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:34 Heat of formation + Delta-G solvation = 8.149452 kcal Electronic energy + Delta-G solvation = -23317.728186 eV Core-core repulsion = 20197.222431 eV Total energy + Delta-G solvation = -3120.505754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54691 -38.92850 -38.24823 -35.36028 -33.59260 -32.95254 -31.29964 -30.35938 -28.12938 -27.61630 -25.15135 -24.54769 -24.14584 -22.47091 -20.69536 -19.54597 -18.69238 -17.80270 -17.31600 -16.85928 -16.31653 -16.23408 -15.98220 -15.53947 -15.21863 -14.73768 -14.51274 -14.29541 -14.16395 -13.84182 -13.74055 -13.43251 -13.42116 -13.08567 -12.95486 -12.86583 -12.82943 -12.57017 -12.38272 -12.23254 -12.10698 -11.92674 -11.86611 -11.50800 -11.24611 -11.02095 -10.75666 -10.59273 -9.56148 -9.33676 -8.72380 -8.19633 -6.30691 -0.28585 0.55319 1.14387 1.33547 1.37650 1.44343 1.58472 2.06622 2.36582 2.42678 3.09970 3.64644 3.74144 3.96878 4.01775 4.07500 4.37235 4.40543 4.51310 4.58004 4.66165 4.71512 4.76854 4.81804 4.84730 4.85849 5.00639 5.08503 5.13124 5.16586 5.17652 5.21479 5.26251 5.36384 5.37960 5.41226 5.56433 5.59186 5.67512 5.88504 6.11476 6.69230 6.79646 7.27449 7.43773 8.87349 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.005653 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.419459 B = 4952.263087 C = 5241.112536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.170 4.170 3 C 0.149 3.851 4 C -0.175 4.175 5 C -0.144 4.144 6 N -0.582 5.582 7 C 0.260 3.740 8 C -0.524 4.524 9 H 0.047 0.953 10 C 0.012 3.988 11 N -0.926 5.926 12 Si 0.956 3.044 13 H -0.261 1.261 14 H -0.277 1.277 15 H -0.284 1.284 16 C 0.571 3.429 17 O -0.595 6.595 18 C -0.309 4.309 19 C -0.071 4.071 20 C -0.175 4.175 21 C -0.237 4.237 22 C -0.082 4.082 23 S 0.318 5.682 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.048 0.952 36 H -0.015 1.015 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.220 -18.078 10.446 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.064 3.936 4 C -0.236 4.236 5 C -0.201 4.201 6 N -0.312 5.312 7 C 0.140 3.860 8 C -0.563 4.563 9 H 0.066 0.934 10 C -0.187 4.187 11 N -0.566 5.566 12 Si 0.781 3.219 13 H -0.185 1.185 14 H -0.202 1.202 15 H -0.210 1.210 16 C 0.359 3.641 17 O -0.478 6.478 18 C -0.428 4.428 19 C -0.105 4.105 20 C -0.205 4.205 21 C -0.356 4.356 22 C -0.140 4.140 23 S 0.590 5.410 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.003 0.997 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.171 0.829 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.734 -16.997 11.228 23.026 hybrid contribution -1.893 0.147 -2.573 3.198 sum 8.841 -16.850 8.655 20.905 Atomic orbital electron populations 1.21810 0.96123 1.01378 1.01002 1.23290 0.96832 0.95126 1.05590 1.20885 0.96181 0.94540 0.81952 1.22529 0.93473 1.05462 1.02125 1.22138 1.00510 0.99043 0.98383 1.48288 1.56302 1.20713 1.05878 1.18870 0.90960 0.79840 0.96359 1.21554 0.95798 0.92429 1.46507 0.93439 1.25695 1.02874 0.94750 0.95344 1.70025 1.37651 0.98411 1.50560 0.85653 0.79977 0.77570 0.78739 1.18513 1.20189 1.21025 1.17557 0.77504 0.85027 0.83980 1.90731 1.58878 1.69622 1.28588 1.24465 1.15032 0.97975 1.05342 1.20736 0.99128 0.92362 0.98285 1.19824 1.03262 0.98561 0.98872 1.25648 1.03596 1.05803 1.00560 1.20470 0.99720 0.92910 1.00880 1.84075 1.43900 0.97442 1.15600 0.96324 0.91659 0.91750 0.89570 0.86729 0.89125 0.86368 0.92893 0.92554 0.88109 0.93102 0.93448 0.99743 0.92556 0.85709 0.82939 0.89919 0.89288 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.37 71.98 0.67 -3.92 16 2 C -0.17 -4.69 3.47 30.60 0.11 -4.58 16 3 C 0.15 4.75 0.75 3.61 0.00 4.75 16 4 C -0.18 -4.21 7.38 71.98 0.53 -3.68 16 5 C -0.14 -4.50 6.17 71.98 0.44 -4.06 16 6 N -0.58 -26.03 2.37 -783.82 -1.86 -27.89 16 7 C 0.26 14.27 4.49 85.63 0.38 14.66 16 8 C -0.52 -30.72 8.85 25.60 0.23 -30.49 16 9 H 0.05 2.83 6.53 -2.91 -0.02 2.81 16 10 C 0.01 0.71 5.46 84.66 0.46 1.17 16 11 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 12 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 13 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 16 C 0.57 27.10 6.73 86.42 0.58 27.69 16 17 O -0.60 -34.76 16.75 -4.35 -0.07 -34.83 16 18 C -0.31 -11.13 3.95 24.08 0.10 -11.04 16 19 C -0.07 -2.38 10.13 21.72 0.22 -2.16 16 20 C -0.18 -4.31 10.00 21.08 0.21 -4.10 16 21 C -0.24 -4.83 6.28 24.68 0.15 -4.67 16 22 C -0.08 -0.96 10.33 71.23 0.74 -0.22 16 23 S 0.32 7.32 12.66 -56.49 -0.71 6.61 16 24 H 0.02 0.73 6.86 -2.39 -0.02 0.71 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.95 5.84 -2.38 -0.01 1.94 16 27 H 0.09 2.57 2.54 -30.85 -0.08 2.49 16 28 H 0.11 2.17 7.55 -2.39 -0.02 2.15 16 29 H 0.09 2.04 7.76 -2.39 -0.02 2.02 16 30 H 0.12 1.82 6.50 -4.78 -0.03 1.79 16 31 H 0.05 1.45 5.18 -17.84 -0.09 1.35 16 32 H 0.06 2.13 5.73 -2.39 -0.01 2.12 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.70 6.67 -2.39 -0.02 1.69 16 35 H 0.05 2.54 5.59 -2.39 -0.01 2.53 16 36 H -0.02 -1.00 7.63 -2.39 -0.02 -1.01 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.08 0.71 8.11 -2.39 -0.02 0.69 16 41 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -77.85 328.75 5.35 -72.51 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.86 Total: 12.16 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.83 Total: -20.66 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.58 Total: -84.02 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.07 Total: -34.83 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -0.71 Total: 6.61 kcal Total: -77.85 5.35 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187515385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.655 kcal (2) G-P(sol) polarization free energy of solvation -77.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds