Wall clock time and date at job start Tue Mar 31 2020 07:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 C 1.52999 * 109.47118 * 295.37316 * 3 2 1 5 5 C 1.53001 * 109.46902 * 175.37423 * 3 2 1 6 6 N 1.46502 * 109.47031 * 55.37666 * 3 2 1 7 7 C 1.46506 * 119.99697 * 238.70827 * 6 3 2 8 8 C 1.50706 * 109.46566 * 269.99611 * 7 6 3 9 9 H 1.08003 * 119.99935 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99681 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99857 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47097 * 60.00537 * 12 10 8 14 14 H 1.48503 * 109.46990 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47431 * 300.00312 * 12 10 8 16 16 C 1.34777 * 120.00405 * 58.70059 * 6 3 2 17 17 O 1.21288 * 119.99451 * 5.34767 * 16 6 3 18 18 C 1.50689 * 120.00272 * 185.34140 * 16 6 3 19 19 C 1.50703 * 109.47358 * 175.60795 * 18 16 6 20 20 C 1.33392 * 125.19786 * 89.99716 * 19 18 16 21 21 C 1.38427 * 114.91850 * 179.97438 * 20 19 18 22 22 C 1.33392 * 114.92106 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.20710 * 269.69996 * 19 18 16 24 24 H 1.09005 * 109.47111 * 60.00111 * 1 2 3 25 25 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47238 * 300.00161 * 1 2 3 27 27 H 1.08999 * 109.46998 * 240.00335 * 2 1 3 28 28 H 1.08992 * 109.46976 * 120.00214 * 2 1 3 29 29 H 1.08997 * 109.47030 * 179.97438 * 4 3 2 30 30 H 1.08993 * 109.47068 * 299.99895 * 4 3 2 31 31 H 1.09001 * 109.47233 * 60.00245 * 4 3 2 32 32 H 1.08997 * 109.46792 * 298.05598 * 5 3 2 33 33 H 1.08998 * 109.47203 * 58.06004 * 5 3 2 34 34 H 1.09001 * 109.46903 * 178.06231 * 5 3 2 35 35 H 1.08996 * 109.47397 * 29.99614 * 7 6 3 36 36 H 1.09002 * 109.47099 * 149.99923 * 7 6 3 37 37 H 0.97005 * 120.00405 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.47033 * 55.61368 * 18 16 6 39 39 H 1.08995 * 109.47644 * 295.61336 * 18 16 6 40 40 H 1.07995 * 122.54286 * 359.96681 * 20 19 18 41 41 H 1.08002 * 122.53732 * 180.02562 * 21 20 19 42 42 H 1.07996 * 125.20485 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6272 2.1294 -1.3033 5 6 3.5656 1.4441 0.1163 6 7 1.4628 2.1645 1.1366 7 6 0.6579 3.3671 0.9081 8 6 1.5529 4.5796 0.9161 9 1 2.6150 4.4657 1.0751 10 6 1.0158 5.8341 0.7195 11 7 -0.2775 5.9727 0.5254 12 14 2.1251 7.3371 0.7301 13 1 3.1417 7.2096 -0.3448 14 1 1.3093 8.5559 0.4972 15 1 2.8060 7.4405 2.0457 16 6 1.6723 1.7224 2.3925 17 8 2.4168 0.7853 2.5892 18 6 0.9816 2.3923 3.5522 19 6 1.2966 1.6467 4.8234 20 6 2.3312 1.8993 5.6266 21 6 2.4176 1.0824 6.7407 22 6 1.4536 0.1660 6.8420 23 16 0.3524 0.3154 5.4786 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.9901 3.1572 -1.3031 30 1 2.0566 1.5923 -2.1489 31 1 0.5404 2.1283 -1.3862 32 1 3.8583 0.9856 1.0609 33 1 3.9936 0.8775 -0.7106 34 1 3.9315 2.4702 0.0817 35 1 0.1574 3.2913 -0.0572 36 1 -0.0878 3.4606 1.6977 37 1 -0.6553 6.8553 0.3867 38 1 -0.0957 2.3874 3.3856 39 1 1.3311 3.4211 3.6382 40 1 3.0472 2.6818 5.4231 41 1 3.2059 1.1796 7.4726 42 1 1.3604 -0.5540 7.6414 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187522656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:48 Heat of formation + Delta-G solvation = -10.984142 kcal Electronic energy + Delta-G solvation = -22764.727032 eV Core-core repulsion = 19643.391583 eV Total energy + Delta-G solvation = -3121.335449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77316 -37.59407 -36.17436 -33.78392 -32.17235 -31.31819 -29.89383 -27.73094 -26.67997 -26.23418 -23.26704 -23.10344 -22.41989 -20.44043 -18.91269 -17.61447 -16.85280 -16.53229 -15.94059 -15.45992 -15.08078 -14.68501 -14.38134 -14.12549 -13.59692 -13.04593 -12.79347 -12.60469 -12.47764 -12.31043 -12.23556 -11.88138 -11.83904 -11.75805 -11.43213 -11.21527 -11.12513 -11.09315 -10.95572 -10.69503 -10.55076 -10.45997 -10.28577 -10.19766 -10.00438 -9.65379 -8.85074 -8.56032 -8.26372 -8.17660 -7.61580 -6.18821 -4.25757 1.29022 1.92220 2.28481 3.03910 3.22714 3.28266 3.30218 3.45940 3.95735 4.32848 5.09680 5.13705 5.23976 5.26399 5.43467 5.50186 5.60121 5.69810 5.80730 5.84562 5.87789 6.02687 6.07648 6.19919 6.21049 6.26054 6.32375 6.41057 6.48864 6.51874 6.59402 6.63287 6.69221 6.77859 6.88441 6.93053 7.01607 7.24071 7.63786 7.77531 8.06851 8.41116 8.80768 9.08274 9.42127 10.87366 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.006169 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.384065 B = 4537.964244 C = 5818.282611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.182 3.818 4 C -0.150 4.150 5 C -0.160 4.160 6 N -0.584 5.584 7 C 0.231 3.769 8 C -0.534 4.534 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.522 3.478 17 O -0.559 6.559 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.228 4.228 23 S 0.090 5.910 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -8.933 4.950 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.097 3.903 4 C -0.207 4.207 5 C -0.218 4.218 6 N -0.315 5.315 7 C 0.111 3.889 8 C -0.572 4.572 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.309 3.691 17 O -0.440 6.440 18 C -0.113 4.113 19 C -0.247 4.247 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.363 4.363 23 S 0.353 5.647 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.046 -10.026 4.546 11.008 hybrid contribution 1.797 1.839 0.400 2.603 sum 1.752 -8.187 4.946 9.724 Atomic orbital electron populations 1.21719 0.96098 1.00360 1.02033 1.21917 0.96020 0.96750 1.02425 1.20156 0.92877 0.90741 0.86530 1.22125 1.01805 1.02128 0.94687 1.22199 0.95109 1.01953 1.02503 1.48277 1.51182 1.28035 1.04020 1.19530 0.90576 0.80293 0.98513 1.21448 0.94598 0.90962 1.50229 0.92209 1.24914 0.94992 0.98901 0.94864 1.69903 1.10787 1.23977 1.48251 0.86636 0.80546 0.81996 0.78775 1.20183 1.21198 1.20152 1.20077 0.81773 0.83317 0.83892 1.90557 1.38251 1.30149 1.85044 1.20239 1.02204 1.00479 0.88396 1.24030 0.99860 1.00376 1.00443 1.20055 0.99024 1.02658 0.95287 1.20085 0.99973 0.96527 0.99207 1.25451 1.01285 1.06037 1.03539 1.84090 1.29506 1.32818 1.18245 0.92777 0.93736 0.92798 0.92249 0.90347 0.90210 0.93035 0.91970 0.90645 0.93295 0.92530 0.93736 0.94797 0.92505 0.88445 0.86169 0.84538 0.84802 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.45 37.16 0.35 -1.92 16 2 C -0.13 -2.19 4.67 -26.73 -0.12 -2.32 16 3 C 0.18 3.30 0.73 -131.82 -0.10 3.20 16 4 C -0.15 -2.62 6.97 37.16 0.26 -2.36 16 5 C -0.16 -2.87 8.45 37.16 0.31 -2.55 16 6 N -0.58 -11.69 1.50 -160.17 -0.24 -11.93 16 7 C 0.23 5.17 4.41 -5.19 -0.02 5.15 16 8 C -0.53 -13.22 8.66 -34.44 -0.30 -13.52 16 9 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16 12 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.52 10.45 6.80 -10.99 -0.07 10.38 16 17 O -0.56 -11.96 12.31 5.55 0.07 -11.89 16 18 C -0.07 -1.30 4.73 -29.04 -0.14 -1.44 16 19 C -0.13 -2.18 5.01 -36.00 -0.18 -2.36 16 20 C -0.14 -2.24 10.05 -41.21 -0.41 -2.65 16 21 C -0.13 -1.74 10.18 -41.21 -0.42 -2.16 16 22 C -0.23 -3.00 11.23 29.04 0.33 -2.68 16 23 S 0.09 1.34 23.33 -107.50 -2.51 -1.17 16 24 H 0.05 0.82 6.55 -51.93 -0.34 0.48 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.92 7.26 -51.93 -0.38 0.55 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.44 6.40 -51.93 -0.33 1.11 16 29 H 0.08 1.58 7.12 -51.93 -0.37 1.21 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.09 5.35 -51.93 -0.28 0.81 16 32 H 0.07 1.47 6.04 -51.93 -0.31 1.16 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 1.05 5.75 -51.93 -0.30 0.75 16 36 H 0.03 0.79 6.32 -51.93 -0.33 0.46 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.10 1.69 7.36 -51.93 -0.38 1.31 16 39 H 0.12 2.26 8.14 -51.93 -0.42 1.84 16 40 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -27.14 345.38 -8.75 -35.88 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.37 Total: 5.44 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.62 Total: -13.64 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.50 Total: -34.96 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.14 -8.75 -35.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187522656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.899 kcal (2) G-P(sol) polarization free energy of solvation -27.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds