Wall clock time and date at job start Tue Mar 31 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 C 1.52999 * 109.47118 * 295.37316 * 3 2 1 5 5 C 1.53001 * 109.46902 * 175.37423 * 3 2 1 6 6 N 1.46502 * 109.47031 * 55.37666 * 3 2 1 7 7 C 1.46506 * 119.99697 * 238.70827 * 6 3 2 8 8 C 1.50706 * 109.46566 * 269.99611 * 7 6 3 9 9 H 1.08003 * 119.99935 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99681 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99857 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47097 * 60.00537 * 12 10 8 14 14 H 1.48503 * 109.46990 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47431 * 300.00312 * 12 10 8 16 16 C 1.34777 * 120.00405 * 58.70059 * 6 3 2 17 17 O 1.21288 * 119.99451 * 5.34767 * 16 6 3 18 18 C 1.50689 * 120.00272 * 185.34140 * 16 6 3 19 19 C 1.50703 * 109.47358 * 175.60795 * 18 16 6 20 20 C 1.33392 * 125.19786 * 89.99716 * 19 18 16 21 21 C 1.38427 * 114.91850 * 179.97438 * 20 19 18 22 22 C 1.33392 * 114.92106 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.20710 * 269.69996 * 19 18 16 24 24 H 1.09005 * 109.47111 * 60.00111 * 1 2 3 25 25 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47238 * 300.00161 * 1 2 3 27 27 H 1.08999 * 109.46998 * 240.00335 * 2 1 3 28 28 H 1.08992 * 109.46976 * 120.00214 * 2 1 3 29 29 H 1.08997 * 109.47030 * 179.97438 * 4 3 2 30 30 H 1.08993 * 109.47068 * 299.99895 * 4 3 2 31 31 H 1.09001 * 109.47233 * 60.00245 * 4 3 2 32 32 H 1.08997 * 109.46792 * 298.05598 * 5 3 2 33 33 H 1.08998 * 109.47203 * 58.06004 * 5 3 2 34 34 H 1.09001 * 109.46903 * 178.06231 * 5 3 2 35 35 H 1.08996 * 109.47397 * 29.99614 * 7 6 3 36 36 H 1.09002 * 109.47099 * 149.99923 * 7 6 3 37 37 H 0.97005 * 120.00405 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.47033 * 55.61368 * 18 16 6 39 39 H 1.08995 * 109.47644 * 295.61336 * 18 16 6 40 40 H 1.07995 * 122.54286 * 359.96681 * 20 19 18 41 41 H 1.08002 * 122.53732 * 180.02562 * 21 20 19 42 42 H 1.07996 * 125.20485 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6272 2.1294 -1.3033 5 6 3.5656 1.4441 0.1163 6 7 1.4628 2.1645 1.1366 7 6 0.6579 3.3671 0.9081 8 6 1.5529 4.5796 0.9161 9 1 2.6150 4.4657 1.0751 10 6 1.0158 5.8341 0.7195 11 7 -0.2775 5.9727 0.5254 12 14 2.1251 7.3371 0.7301 13 1 3.1417 7.2096 -0.3448 14 1 1.3093 8.5559 0.4972 15 1 2.8060 7.4405 2.0457 16 6 1.6723 1.7224 2.3925 17 8 2.4168 0.7853 2.5892 18 6 0.9816 2.3923 3.5522 19 6 1.2966 1.6467 4.8234 20 6 2.3312 1.8993 5.6266 21 6 2.4176 1.0824 6.7407 22 6 1.4536 0.1660 6.8420 23 16 0.3524 0.3154 5.4786 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.9901 3.1572 -1.3031 30 1 2.0566 1.5923 -2.1489 31 1 0.5404 2.1283 -1.3862 32 1 3.8583 0.9856 1.0609 33 1 3.9936 0.8775 -0.7106 34 1 3.9315 2.4702 0.0817 35 1 0.1574 3.2913 -0.0572 36 1 -0.0878 3.4606 1.6977 37 1 -0.6553 6.8553 0.3867 38 1 -0.0957 2.3874 3.3856 39 1 1.3311 3.4211 3.6382 40 1 3.0472 2.6818 5.4231 41 1 3.2059 1.1796 7.4726 42 1 1.3604 -0.5540 7.6414 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187522656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:47 Heat of formation + Delta-G solvation = -22.606862 kcal Electronic energy + Delta-G solvation = -22765.231031 eV Core-core repulsion = 19643.391583 eV Total energy + Delta-G solvation = -3121.839448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33197 -38.81659 -37.66124 -35.53767 -33.93312 -32.67481 -31.26469 -29.44339 -27.96465 -27.86536 -24.80725 -24.47441 -23.92742 -21.87258 -20.08761 -19.18327 -18.61415 -17.97327 -17.57277 -16.88727 -16.46432 -16.24985 -16.05851 -15.53760 -15.00190 -14.49346 -14.22707 -14.14780 -13.93315 -13.68708 -13.50623 -13.38997 -13.31000 -13.13522 -12.87952 -12.81294 -12.75669 -12.60337 -12.38386 -12.27340 -12.17410 -11.98885 -11.72407 -11.64235 -11.55342 -11.37499 -10.59588 -10.33296 -9.50578 -9.34059 -9.28456 -8.15888 -6.28718 0.12217 0.75627 1.14529 1.41576 1.43321 1.49787 1.84781 1.87210 2.35992 2.50121 3.13856 3.76636 3.81022 4.04922 4.09672 4.23301 4.25088 4.28597 4.43957 4.63931 4.66034 4.71303 4.75529 4.77003 4.82838 4.84408 4.97444 5.04772 5.07614 5.16787 5.24769 5.25410 5.29126 5.37841 5.44001 5.50432 5.58271 5.62952 5.73612 6.04643 6.13693 6.66282 6.90942 7.38026 7.50971 8.88572 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.006169 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.384065 B = 4537.964244 C = 5818.282611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.170 3.830 4 C -0.141 4.141 5 C -0.152 4.152 6 N -0.585 5.585 7 C 0.248 3.752 8 C -0.535 4.535 9 H 0.048 0.952 10 C 0.026 3.974 11 N -0.918 5.918 12 Si 0.946 3.054 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.275 1.275 16 C 0.519 3.481 17 O -0.572 6.572 18 C -0.065 4.065 19 C -0.164 4.164 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.211 4.211 23 S 0.086 5.914 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.022 0.978 37 H 0.266 0.734 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -10.062 5.309 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.086 3.914 4 C -0.199 4.199 5 C -0.210 4.210 6 N -0.316 5.316 7 C 0.127 3.873 8 C -0.573 4.573 9 H 0.066 0.934 10 C -0.175 4.175 11 N -0.557 5.557 12 Si 0.772 3.228 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.200 1.200 16 C 0.307 3.693 17 O -0.454 6.454 18 C -0.106 4.106 19 C -0.281 4.281 20 C -0.175 4.175 21 C -0.168 4.168 22 C -0.346 4.346 23 S 0.349 5.651 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.152 0.848 41 H 0.181 0.819 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.590 -11.163 4.902 12.206 hybrid contribution 1.629 2.126 0.319 2.697 sum 2.219 -9.037 5.221 10.670 Atomic orbital electron populations 1.21683 0.95515 1.01441 1.01188 1.21840 0.96462 0.95241 1.02742 1.20448 0.93016 0.91781 0.86136 1.22032 1.01593 1.00790 0.95452 1.22114 0.95064 1.01069 1.02713 1.48269 1.50982 1.27469 1.04874 1.19158 0.90125 0.80632 0.97391 1.21582 0.94201 0.91999 1.49556 0.93394 1.25521 0.96010 1.01180 0.94740 1.69986 1.11980 1.24487 1.49280 0.85792 0.79048 0.79273 0.78665 1.19931 1.20821 1.20005 1.20367 0.81560 0.83160 0.84218 1.90536 1.38824 1.30745 1.85248 1.20087 1.01890 0.99778 0.88878 1.23978 1.01495 1.02084 1.00550 1.20319 0.98469 1.02803 0.95899 1.20337 1.01133 0.96212 0.99114 1.25900 0.99753 1.05872 1.03083 1.84049 1.29865 1.31955 1.19197 0.92209 0.91695 0.95025 0.89572 0.92229 0.92978 0.89905 0.92369 0.92449 0.90391 0.94281 0.94684 0.95980 0.92469 0.88441 0.87635 0.84775 0.81889 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.45 71.98 0.68 -3.57 16 2 C -0.12 -3.94 4.67 30.60 0.14 -3.80 16 3 C 0.17 6.10 0.73 3.60 0.00 6.10 16 4 C -0.14 -4.81 6.97 71.98 0.50 -4.31 16 5 C -0.15 -5.36 8.45 71.98 0.61 -4.75 16 6 N -0.59 -23.89 1.50 -779.05 -1.17 -25.06 16 7 C 0.25 11.43 4.41 85.63 0.38 11.80 16 8 C -0.53 -27.07 8.66 25.60 0.22 -26.85 16 9 H 0.05 2.51 7.81 -2.91 -0.02 2.48 16 10 C 0.03 1.33 5.46 84.65 0.46 1.80 16 11 N -0.92 -49.60 13.29 21.45 0.28 -49.31 16 12 Si 0.95 41.54 29.54 68.60 2.03 43.57 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 C 0.52 21.29 6.80 87.65 0.60 21.88 16 17 O -0.57 -24.78 12.31 -3.05 -0.04 -24.82 16 18 C -0.06 -2.45 4.73 29.10 0.14 -2.31 16 19 C -0.16 -5.57 5.01 24.59 0.12 -5.45 16 20 C -0.14 -4.54 10.05 21.22 0.21 -4.33 16 21 C -0.14 -3.50 10.18 21.22 0.22 -3.28 16 22 C -0.21 -5.01 11.23 66.72 0.75 -4.27 16 23 S 0.09 2.49 23.33 -56.49 -1.32 1.17 16 24 H 0.06 1.72 6.55 -2.38 -0.02 1.70 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.07 7.26 -2.39 -0.02 1.06 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.13 6.40 -2.39 -0.02 2.12 16 29 H 0.05 2.06 7.12 -2.39 -0.02 2.04 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.01 5.35 -2.39 -0.01 2.00 16 32 H 0.06 2.24 6.04 -2.39 -0.01 2.22 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.69 5.75 -2.39 -0.01 1.68 16 36 H 0.02 1.07 6.32 -2.39 -0.02 1.06 16 37 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 38 H 0.10 3.57 7.36 -2.38 -0.02 3.55 16 39 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 40 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -58.18 345.38 5.82 -52.37 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.00 Total: 23.41 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.03 Total: -21.32 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -0.89 Total: -74.37 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.04 Total: -24.82 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.32 Total: 1.17 kcal Total: -58.18 5.82 -52.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187522656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.759 kcal (2) G-P(sol) polarization free energy of solvation -58.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds