Wall clock time and date at job start Tue Mar 31 2020 08:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 H 1.08999 * 109.47442 * 54.99904 * 3 2 1 5 5 C 1.53001 * 109.47088 * 294.99252 * 3 2 1 6 6 C 1.53003 * 109.46647 * 174.99638 * 3 2 1 7 7 C 1.50699 * 109.46736 * 184.99734 * 6 3 2 8 8 O 1.21293 * 120.00442 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99887 * 180.02562 * 7 6 3 10 10 C 1.40082 * 120.00268 * 175.63253 * 9 7 6 11 11 C 1.38710 * 120.07778 * 34.58556 * 10 9 7 12 12 C 1.38188 * 120.02284 * 179.70223 * 11 10 9 13 13 C 1.38555 * 120.17679 * 0.60119 * 12 11 10 14 14 F 1.35095 * 119.92550 * 179.70033 * 13 12 11 15 15 C 1.38348 * 120.15231 * 359.67266 * 13 12 11 16 16 C 1.38740 * 119.97549 * 0.03053 * 15 13 12 17 17 O 1.35771 * 120.08877 * 179.97438 * 16 15 13 18 18 C 1.34808 * 116.99692 * 5.43235 * 17 16 15 19 19 H 1.07997 * 120.00330 * 354.95631 * 18 17 16 20 20 C 1.38638 * 119.99742 * 174.94966 * 18 17 16 21 21 N 1.31569 * 120.00411 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46794 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46989 * 120.00314 * 22 20 18 25 25 H 1.48496 * 109.47513 * 240.00268 * 22 20 18 26 26 H 1.08999 * 109.46558 * 59.99977 * 1 2 3 27 27 H 1.08996 * 109.47244 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47047 * 300.00626 * 1 2 3 29 29 H 1.08998 * 109.47047 * 239.99374 * 2 1 3 30 30 H 1.08999 * 109.46558 * 120.00023 * 2 1 3 31 31 H 1.08999 * 109.47512 * 300.00610 * 5 3 2 32 32 H 1.09004 * 109.46638 * 60.00858 * 5 3 2 33 33 H 1.08996 * 109.46872 * 180.02562 * 5 3 2 34 34 H 1.08994 * 109.47510 * 304.99603 * 6 3 2 35 35 H 1.09007 * 109.47018 * 64.99753 * 6 3 2 36 36 H 0.96997 * 119.99915 * 355.62769 * 9 7 6 37 37 H 1.07999 * 119.98795 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.91664 * 180.29637 * 12 11 10 39 39 H 1.07995 * 120.01005 * 180.02562 * 15 13 12 40 40 H 0.97000 * 120.00685 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4442 0.1258 7 6 4.0570 2.8632 0.2493 8 8 3.2660 3.7827 0.2382 9 7 5.3762 3.1107 0.3720 10 6 5.8420 4.4316 0.3947 11 6 5.0808 5.4270 0.9894 12 6 5.5441 6.7286 1.0166 13 6 6.7632 7.0461 0.4398 14 9 7.2085 8.3213 0.4640 15 6 7.5258 6.0601 -0.1604 16 6 7.0696 4.7501 -0.1859 17 8 7.8158 3.7807 -0.7747 18 6 9.0397 4.1339 -1.2161 19 1 9.3540 5.1660 -1.1680 20 6 9.8948 3.1722 -1.7317 21 7 9.5117 1.9148 -1.7907 22 14 11.5904 3.6616 -2.3441 23 1 11.7764 5.1245 -2.1694 24 1 12.6262 2.9350 -1.5666 25 1 11.7166 3.3143 -3.7823 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0700 1.5874 -2.1492 32 1 0.5491 2.1252 -1.3970 33 1 1.9991 3.1540 -1.3076 34 1 3.8571 0.8800 1.0114 35 1 4.0030 0.9834 -0.7596 36 1 6.0031 2.3741 0.4446 37 1 4.1276 5.1839 1.4353 38 1 4.9522 7.5014 1.4844 39 1 8.4759 6.3100 -0.6089 40 1 10.1101 1.2418 -2.1511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189382750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:50 Heat of formation + Delta-G solvation = -103.382234 kcal Electronic energy + Delta-G solvation = -23521.703099 eV Core-core repulsion = 19830.147792 eV Total energy + Delta-G solvation = -3691.555307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.26989 -40.19389 -38.77825 -36.73831 -35.97853 -34.03654 -32.43258 -30.89790 -29.45096 -28.68621 -27.10772 -25.53116 -24.14353 -22.44562 -21.61332 -20.22736 -19.62424 -18.36482 -17.83810 -16.78599 -16.65473 -15.60150 -15.26866 -15.13088 -14.99724 -14.82848 -14.34743 -14.23324 -13.92341 -13.66620 -13.54681 -13.24252 -13.12235 -12.48269 -12.38518 -12.18739 -11.91618 -11.87036 -11.62861 -11.40565 -11.31562 -11.02364 -10.77385 -10.72480 -10.60116 -10.55513 -10.52958 -9.79698 -9.66060 -9.20395 -8.98845 -7.90516 -7.14048 -6.62830 -4.20818 1.79566 2.10241 2.97321 3.04200 3.06632 3.11971 3.54284 3.83527 4.31808 4.77916 4.79827 4.84305 4.88107 4.93877 5.10077 5.20576 5.25659 5.48107 5.54549 5.62339 5.68076 5.72317 5.73127 5.78569 5.92881 6.01814 6.02225 6.05811 6.16171 6.25377 6.43329 6.51526 6.60347 6.74389 6.89795 6.92535 7.05552 7.18597 7.62855 7.80646 7.93387 8.57458 8.83287 9.44304 10.54179 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.004484 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.494073 B = 6243.536425 C = 8157.934666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.137 4.137 7 C 0.510 3.490 8 O -0.535 6.535 9 N -0.651 5.651 10 C 0.058 3.942 11 C -0.050 4.050 12 C -0.230 4.230 13 C 0.130 3.870 14 F -0.151 7.151 15 C -0.260 4.260 16 C 0.158 3.842 17 O -0.168 6.168 18 C -0.393 4.393 19 H 0.095 0.905 20 C 0.043 3.957 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.414 0.586 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -2.760 3.832 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.095 0.905 5 C -0.212 4.212 6 C -0.177 4.177 7 C 0.298 3.702 8 O -0.413 6.413 9 N -0.295 5.295 10 C -0.037 4.037 11 C -0.070 4.070 12 C -0.250 4.250 13 C 0.110 3.890 14 F -0.130 7.130 15 C -0.280 4.280 16 C 0.102 3.898 17 O -0.070 6.070 18 C -0.469 4.469 19 H 0.112 0.888 20 C -0.162 4.162 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.251 0.749 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.160 0.840 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.706 -2.592 3.665 11.609 hybrid contribution 1.445 0.140 -0.379 1.501 sum -9.261 -2.451 3.285 10.127 Atomic orbital electron populations 1.21803 0.95913 1.01228 1.02024 1.21602 0.95975 0.96321 1.01963 1.20892 0.92772 0.95752 0.99829 0.90476 1.22005 1.00789 1.02469 0.95963 1.21762 0.97590 0.93843 1.04527 1.20744 0.81854 0.91784 0.75809 1.90609 1.54570 1.46351 1.49768 1.43229 1.08033 1.07022 1.71245 1.16908 0.94925 0.85237 1.06587 1.20648 0.99126 0.90826 0.96425 1.20491 0.97031 0.97493 1.10019 1.17468 0.93809 0.78047 0.99690 1.91410 1.89570 1.37178 1.94863 1.20864 1.03982 0.92115 1.11076 1.18847 0.91267 0.88346 0.91327 1.83930 1.27115 1.32355 1.63639 1.21409 0.88442 0.95748 1.41285 0.88772 1.25284 0.99647 0.94604 0.96629 1.70014 1.36704 1.00630 1.41951 0.85618 0.79994 0.79093 0.78634 1.18947 1.19994 1.20015 0.92424 0.93059 0.92816 0.91900 0.92056 0.93386 0.92967 0.90537 0.88948 0.88546 0.74942 0.84084 0.85965 0.83977 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.13 5.40 -26.73 -0.14 -1.28 16 3 C -0.07 -0.85 2.04 -90.62 -0.18 -1.03 16 4 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 5 C -0.16 -1.94 8.69 37.16 0.32 -1.62 16 6 C -0.14 -1.68 5.18 -27.88 -0.14 -1.82 16 7 C 0.51 8.33 7.39 -10.98 -0.08 8.25 16 8 O -0.54 -9.88 11.38 5.55 0.06 -9.82 16 9 N -0.65 -11.72 5.19 -9.72 -0.05 -11.77 16 10 C 0.06 1.19 6.33 -83.45 -0.53 0.66 16 11 C -0.05 -0.95 8.70 -39.43 -0.34 -1.30 16 12 C -0.23 -4.28 10.02 -39.48 -0.40 -4.67 16 13 C 0.13 2.60 7.29 -39.42 -0.29 2.31 16 14 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 15 C -0.26 -5.67 9.14 -39.36 -0.36 -6.03 16 16 C 0.16 3.63 6.66 -38.93 -0.26 3.38 16 17 O -0.17 -4.35 9.32 0.05 0.00 -4.35 16 18 C -0.39 -10.31 9.49 30.88 0.29 -10.01 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -23.23 13.67 55.48 0.76 -22.47 16 22 Si 0.94 19.56 29.55 -169.99 -5.02 14.54 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 33 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.41 7.13 8.57 -40.82 -0.35 6.78 16 37 H 0.14 2.58 6.19 -52.49 -0.32 2.26 16 38 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.14 3.11 5.64 -52.49 -0.30 2.81 16 40 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -28.66 335.19 -6.17 -34.83 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.16 Total: 9.96 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.85 Total: -13.10 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.71 Total: -34.24 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.06 Total: -14.17 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.66 -6.17 -34.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189382750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.548 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds