Wall clock time and date at job start Tue Mar 31 2020 08:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 H 1.08999 * 109.47442 * 54.99904 * 3 2 1 5 5 C 1.53001 * 109.47088 * 294.99252 * 3 2 1 6 6 C 1.53003 * 109.46647 * 174.99638 * 3 2 1 7 7 C 1.50699 * 109.46736 * 184.99734 * 6 3 2 8 8 O 1.21293 * 120.00442 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99887 * 180.02562 * 7 6 3 10 10 C 1.40082 * 120.00268 * 175.63253 * 9 7 6 11 11 C 1.38710 * 120.07778 * 34.58556 * 10 9 7 12 12 C 1.38188 * 120.02284 * 179.70223 * 11 10 9 13 13 C 1.38555 * 120.17679 * 0.60119 * 12 11 10 14 14 F 1.35095 * 119.92550 * 179.70033 * 13 12 11 15 15 C 1.38348 * 120.15231 * 359.67266 * 13 12 11 16 16 C 1.38740 * 119.97549 * 0.03053 * 15 13 12 17 17 O 1.35771 * 120.08877 * 179.97438 * 16 15 13 18 18 C 1.34808 * 116.99692 * 5.43235 * 17 16 15 19 19 H 1.07997 * 120.00330 * 354.95631 * 18 17 16 20 20 C 1.38638 * 119.99742 * 174.94966 * 18 17 16 21 21 N 1.31569 * 120.00411 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46794 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46989 * 120.00314 * 22 20 18 25 25 H 1.48496 * 109.47513 * 240.00268 * 22 20 18 26 26 H 1.08999 * 109.46558 * 59.99977 * 1 2 3 27 27 H 1.08996 * 109.47244 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47047 * 300.00626 * 1 2 3 29 29 H 1.08998 * 109.47047 * 239.99374 * 2 1 3 30 30 H 1.08999 * 109.46558 * 120.00023 * 2 1 3 31 31 H 1.08999 * 109.47512 * 300.00610 * 5 3 2 32 32 H 1.09004 * 109.46638 * 60.00858 * 5 3 2 33 33 H 1.08996 * 109.46872 * 180.02562 * 5 3 2 34 34 H 1.08994 * 109.47510 * 304.99603 * 6 3 2 35 35 H 1.09007 * 109.47018 * 64.99753 * 6 3 2 36 36 H 0.96997 * 119.99915 * 355.62769 * 9 7 6 37 37 H 1.07999 * 119.98795 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.91664 * 180.29637 * 12 11 10 39 39 H 1.07995 * 120.01005 * 180.02562 * 15 13 12 40 40 H 0.97000 * 120.00685 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4442 0.1258 7 6 4.0570 2.8632 0.2493 8 8 3.2660 3.7827 0.2382 9 7 5.3762 3.1107 0.3720 10 6 5.8420 4.4316 0.3947 11 6 5.0808 5.4270 0.9894 12 6 5.5441 6.7286 1.0166 13 6 6.7632 7.0461 0.4398 14 9 7.2085 8.3213 0.4640 15 6 7.5258 6.0601 -0.1604 16 6 7.0696 4.7501 -0.1859 17 8 7.8158 3.7807 -0.7747 18 6 9.0397 4.1339 -1.2161 19 1 9.3540 5.1660 -1.1680 20 6 9.8948 3.1722 -1.7317 21 7 9.5117 1.9148 -1.7907 22 14 11.5904 3.6616 -2.3441 23 1 11.7764 5.1245 -2.1694 24 1 12.6262 2.9350 -1.5666 25 1 11.7166 3.3143 -3.7823 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0700 1.5874 -2.1492 32 1 0.5491 2.1252 -1.3970 33 1 1.9991 3.1540 -1.3076 34 1 3.8571 0.8800 1.0114 35 1 4.0030 0.9834 -0.7596 36 1 6.0031 2.3741 0.4446 37 1 4.1276 5.1839 1.4353 38 1 4.9522 7.5014 1.4844 39 1 8.4759 6.3100 -0.6089 40 1 10.1101 1.2418 -2.1511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189382750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:50 Heat of formation + Delta-G solvation = -119.094059 kcal Electronic energy + Delta-G solvation = -23522.384415 eV Core-core repulsion = 19830.147792 eV Total energy + Delta-G solvation = -3692.236623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.85383 -41.67520 -40.34837 -38.21549 -37.17106 -35.51042 -34.31928 -31.88287 -31.06164 -30.08809 -28.30930 -27.38591 -25.10611 -24.02151 -23.15938 -21.47708 -20.69252 -20.15799 -19.49022 -18.25743 -18.11268 -17.06553 -16.95436 -16.58311 -16.37546 -16.00310 -15.93410 -15.49534 -15.39507 -15.17049 -14.98301 -14.79168 -14.17112 -14.02784 -13.72380 -13.45776 -13.41987 -13.05731 -12.77442 -12.76964 -12.55831 -12.35664 -12.16759 -12.13433 -11.72726 -11.65615 -11.49929 -11.36870 -11.14792 -10.84405 -10.59254 -9.57680 -8.78566 -8.52080 -6.18452 0.16902 0.44428 1.37100 1.42536 1.52984 1.62673 2.11596 2.20296 2.65263 3.04009 3.15725 3.43562 3.69828 3.86485 3.93786 4.01565 4.14457 4.28261 4.34781 4.48083 4.61322 4.65217 4.73011 4.75588 4.86449 4.91669 4.94000 5.02125 5.15822 5.20448 5.21153 5.27240 5.29679 5.33831 5.36188 5.51422 5.58573 5.63524 5.92311 6.02812 6.52434 6.92460 7.19564 7.60906 8.68427 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.004484 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.494073 B = 6243.536425 C = 8157.934666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.070 4.070 4 H 0.069 0.931 5 C -0.153 4.153 6 C -0.131 4.131 7 C 0.508 3.492 8 O -0.556 6.556 9 N -0.656 5.656 10 C 0.059 3.941 11 C -0.051 4.051 12 C -0.206 4.206 13 C 0.122 3.878 14 F -0.145 7.145 15 C -0.267 4.267 16 C 0.131 3.869 17 O -0.201 6.201 18 C -0.417 4.417 19 H 0.098 0.902 20 C -0.007 4.007 21 N -0.903 5.903 22 Si 1.011 2.989 23 H -0.258 1.258 24 H -0.266 1.266 25 H -0.269 1.269 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.417 0.583 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 -2.740 4.517 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.089 4.089 4 H 0.087 0.913 5 C -0.211 4.211 6 C -0.171 4.171 7 C 0.298 3.702 8 O -0.435 6.435 9 N -0.300 5.300 10 C -0.036 4.036 11 C -0.072 4.072 12 C -0.225 4.225 13 C 0.102 3.898 14 F -0.124 7.124 15 C -0.287 4.287 16 C 0.077 3.923 17 O -0.106 6.106 18 C -0.493 4.493 19 H 0.115 0.885 20 C -0.207 4.207 21 N -0.540 5.540 22 Si 0.831 3.169 23 H -0.182 1.182 24 H -0.191 1.191 25 H -0.194 1.194 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.253 0.747 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.153 0.847 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.633 -2.553 4.370 12.687 hybrid contribution 1.500 0.264 -0.486 1.599 sum -10.133 -2.289 3.884 11.091 Atomic orbital electron populations 1.21806 0.95285 1.02018 1.01880 1.21569 0.96489 0.94549 1.02779 1.20881 0.92035 0.97175 0.98766 0.91258 1.21968 1.01593 1.00656 0.96845 1.21848 0.98072 0.91083 1.06057 1.21512 0.80826 0.93354 0.74472 1.90592 1.54843 1.47532 1.50493 1.43399 1.08868 1.06161 1.71599 1.17204 0.94146 0.86870 1.05363 1.20868 0.99346 0.90776 0.96167 1.20893 0.96073 0.98020 1.07563 1.17472 0.94243 0.78005 1.00052 1.91425 1.89590 1.36516 1.94829 1.20942 1.04091 0.92435 1.11266 1.19216 0.92175 0.88529 0.92338 1.83907 1.27540 1.33460 1.65703 1.21780 0.89140 0.96283 1.42111 0.88471 1.26360 1.03335 0.94471 0.96523 1.70115 1.38365 1.01743 1.43767 0.84624 0.75021 0.79083 0.78159 1.18159 1.19120 1.19400 0.92762 0.91828 0.92804 0.91539 0.90797 0.93151 0.91714 0.93640 0.86217 0.87938 0.74695 0.82796 0.82508 0.84750 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 71.98 0.70 -1.57 16 2 C -0.12 -1.89 5.40 30.60 0.17 -1.72 16 3 C -0.07 -1.49 2.04 -10.79 -0.02 -1.51 16 4 H 0.07 1.61 7.95 -2.39 -0.02 1.59 16 5 C -0.15 -3.72 8.69 71.98 0.63 -3.09 16 6 C -0.13 -3.00 5.18 29.85 0.15 -2.85 16 7 C 0.51 16.25 7.39 87.66 0.65 16.90 16 8 O -0.56 -20.15 11.38 -3.07 -0.03 -20.18 16 9 N -0.66 -23.63 5.19 -303.04 -1.57 -25.20 16 10 C 0.06 2.43 6.33 38.23 0.24 2.68 16 11 C -0.05 -1.89 8.70 22.37 0.19 -1.69 16 12 C -0.21 -7.16 10.02 22.33 0.22 -6.93 16 13 C 0.12 4.75 7.29 22.37 0.16 4.91 16 14 F -0.14 -5.33 17.26 44.97 0.78 -4.55 16 15 C -0.27 -11.79 9.14 22.42 0.20 -11.58 16 16 C 0.13 6.16 6.66 22.69 0.15 6.31 16 17 O -0.20 -10.85 9.32 -22.75 -0.21 -11.06 16 18 C -0.42 -22.62 9.49 67.92 0.64 -21.98 16 19 H 0.10 4.99 5.20 -2.91 -0.02 4.97 16 20 C -0.01 -0.37 5.49 84.83 0.47 0.10 16 21 N -0.90 -50.26 13.67 21.61 0.30 -49.96 16 22 Si 1.01 40.50 29.55 68.60 2.03 42.53 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 25 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 26 H 0.05 0.83 6.56 -2.39 -0.02 0.82 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.37 6.57 -2.39 -0.02 1.35 16 33 H 0.04 1.39 5.95 -2.39 -0.01 1.37 16 34 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.42 14.57 8.57 -92.71 -0.79 13.77 16 37 H 0.15 5.33 6.19 -2.91 -0.02 5.31 16 38 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.13 6.05 5.64 -2.91 -0.02 6.04 16 40 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -62.92 335.19 6.12 -56.80 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.28 Total: 33.66 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.56 Total: -22.03 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.28 Total: -75.16 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.25 Total: -31.24 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -62.92 6.12 -56.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189382750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.296 kcal (2) G-P(sol) polarization free energy of solvation -62.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds