Wall clock time and date at job start Tue Mar 31 2020 07:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47433 * 2 1 4 4 C 1.52996 * 109.47100 * 132.93145 * 3 2 1 5 5 C 1.53002 * 109.47042 * 12.92875 * 3 2 1 6 6 N 1.46507 * 109.47084 * 252.93048 * 3 2 1 7 7 C 1.46494 * 120.00026 * 91.81977 * 6 3 2 8 8 C 1.50699 * 109.47257 * 86.17995 * 7 6 3 9 9 H 1.07997 * 119.99956 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00252 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00028 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47561 * 59.99649 * 12 10 8 14 14 H 1.48500 * 109.47223 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47066 * 299.99806 * 12 10 8 16 16 C 1.34774 * 119.99973 * 271.82122 * 6 3 2 17 17 O 1.21631 * 120.00228 * 184.56928 * 16 6 3 18 18 C 1.47193 * 119.99997 * 4.57139 * 16 6 3 19 19 C 1.36009 * 123.45934 * 35.41821 * 18 16 6 20 20 S 1.70448 * 110.81511 * 179.89254 * 19 18 16 21 21 C 1.75502 * 92.44508 * 0.32443 * 20 19 18 22 22 C 1.32771 * 110.57526 * 359.81562 * 21 20 19 23 23 C 1.50705 * 123.45620 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.47015 * 304.20798 * 1 2 3 25 25 H 1.09002 * 109.47364 * 64.20408 * 1 2 3 26 26 H 1.08996 * 109.47612 * 184.20686 * 1 2 3 27 27 H 1.08998 * 109.47181 * 240.00039 * 2 1 3 28 28 H 1.09002 * 109.47473 * 120.00014 * 2 1 3 29 29 H 1.09006 * 109.46802 * 238.07279 * 4 3 2 30 30 H 1.08989 * 109.47623 * 358.06822 * 4 3 2 31 31 H 1.08997 * 109.47043 * 118.07897 * 4 3 2 32 32 H 1.09002 * 109.46907 * 300.00244 * 5 3 2 33 33 H 1.09001 * 109.46864 * 59.99973 * 5 3 2 34 34 H 1.08997 * 109.47081 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47462 * 206.17831 * 7 6 3 36 36 H 1.09005 * 109.47420 * 326.18122 * 7 6 3 37 37 H 0.97006 * 119.99859 * 180.02562 * 11 10 8 38 38 H 1.07996 * 124.59167 * 0.02562 * 19 18 16 39 39 H 1.08007 * 124.71225 * 179.78691 * 21 20 19 40 40 H 1.09004 * 109.46874 * 269.97671 * 23 22 21 41 41 H 1.09000 * 109.47458 * 29.97518 * 23 22 21 42 42 H 1.08997 * 109.46703 * 149.98133 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.1363 1.5958 1.0561 5 6 0.8845 2.3920 0.3227 6 7 2.5851 1.7677 -1.3204 7 6 1.7237 2.3716 -2.3400 8 6 1.7107 3.8683 -2.1644 9 1 2.2862 4.3240 -1.3723 10 6 0.9633 4.6557 -3.0144 11 7 0.2622 4.1007 -3.9786 12 14 0.9479 6.5109 -2.7971 13 1 2.3287 7.0378 -2.9413 14 1 0.0737 7.1230 -3.8298 15 1 0.4284 6.8469 -1.4471 16 6 3.8789 1.5114 -1.5972 17 8 4.3529 1.8566 -2.6628 18 6 4.7184 0.8135 -0.6098 19 6 4.2547 -0.1699 0.2073 20 16 5.4971 -0.7539 1.2176 21 6 6.6747 0.3551 0.5369 22 6 6.1176 1.1071 -0.4049 23 6 6.8683 2.1586 -1.1807 24 1 -0.3633 0.5778 0.8499 25 1 -0.3634 0.4472 -0.9253 26 1 -0.3634 -1.0248 0.0754 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8490 2.3693 1.7684 30 1 3.2698 0.6501 1.5812 31 1 4.0710 1.8774 0.5713 32 1 0.1035 2.2828 -0.4297 33 1 0.4790 2.1500 1.3051 34 1 1.2478 3.4197 0.3223 35 1 2.1057 2.1253 -3.3307 36 1 0.7100 1.9847 -2.2349 37 1 -0.2634 4.6547 -4.5768 38 1 3.2377 -0.5331 0.2136 39 1 7.7089 0.4176 0.8420 40 1 6.7984 3.1136 -0.6597 41 1 7.9152 1.8679 -1.2676 42 1 6.4341 2.2551 -2.1758 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189922631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:45 Heat of formation + Delta-G solvation = 51.415029 kcal Electronic energy + Delta-G solvation = -23415.571885 eV Core-core repulsion = 20296.942266 eV Total energy + Delta-G solvation = -3118.629618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84557 -37.28200 -36.82511 -33.36640 -32.23422 -31.55569 -29.37883 -28.10552 -26.94608 -26.28009 -24.50026 -23.46955 -22.15317 -20.82291 -19.21169 -17.46061 -17.04983 -16.59922 -16.16921 -15.23327 -14.78199 -14.69604 -14.27842 -14.15825 -13.71857 -13.52654 -13.22754 -12.69309 -12.46097 -12.33432 -12.24660 -12.07016 -11.84585 -11.60421 -11.51889 -11.14672 -11.07896 -10.97814 -10.93582 -10.87370 -10.71727 -10.48317 -10.37691 -10.12357 -9.98427 -9.53884 -8.89550 -8.40860 -8.30224 -7.91396 -7.62521 -6.02356 -4.05541 1.08662 1.75172 2.09213 2.37131 3.32046 3.36915 3.39671 3.72491 3.98097 4.45684 4.83846 4.92872 5.04279 5.17192 5.27912 5.31591 5.40126 5.52038 5.63096 5.69335 5.71184 5.82262 5.91328 5.95271 6.01925 6.04962 6.10747 6.21176 6.26138 6.33133 6.36384 6.46858 6.49334 6.71218 6.76590 7.02834 7.15860 7.46409 7.58251 7.94032 8.25861 8.45078 8.91836 9.10827 9.58295 11.05654 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.006096 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.128835 B = 4592.391474 C = 5506.338082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.166 3.834 4 C -0.183 4.183 5 C -0.143 4.143 6 N -0.581 5.581 7 C 0.248 3.752 8 C -0.517 4.517 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.565 3.435 17 O -0.533 6.533 18 C -0.138 4.138 19 C -0.233 4.233 20 S 0.128 5.872 21 C -0.247 4.247 22 C -0.052 4.052 23 C -0.106 4.106 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.196 0.804 39 H 0.162 0.838 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -9.798 12.847 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.080 3.920 4 C -0.240 4.240 5 C -0.200 4.200 6 N -0.312 5.312 7 C 0.129 3.871 8 C -0.556 4.556 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.350 3.650 17 O -0.411 6.411 18 C -0.154 4.154 19 C -0.369 4.369 20 S 0.394 5.606 21 C -0.381 4.381 22 C -0.064 4.064 23 C -0.165 4.165 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.212 0.788 39 H 0.180 0.820 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.516 -10.680 13.234 18.212 hybrid contribution -0.217 2.127 -0.937 2.334 sum 6.299 -8.553 12.297 16.250 Atomic orbital electron populations 1.21982 0.94906 1.00947 1.03136 1.22439 0.97374 0.96863 1.01470 1.20379 0.94338 0.93777 0.83549 1.23964 1.00536 1.01081 0.98419 1.22267 0.97668 0.99796 1.00302 1.48348 1.09366 1.59677 1.13798 1.19275 0.88666 0.92677 0.86479 1.21354 1.27989 0.91440 1.14837 0.92483 1.24900 0.95501 0.98614 0.95001 1.69917 1.30153 1.35609 1.17750 0.86629 0.78023 0.85521 0.77670 1.20254 1.21258 1.20310 1.17493 0.82027 0.79474 0.86032 1.90725 1.72118 1.52975 1.25321 1.20148 0.94236 1.00516 1.00531 1.26827 1.05935 1.03289 1.00815 1.82785 0.99556 1.39069 1.39209 1.25090 1.03674 1.04189 1.05168 1.19879 0.91848 0.98174 0.96530 1.20665 0.98525 0.95591 1.01699 0.91825 0.91585 0.93486 0.91008 0.91308 0.92896 0.90891 0.89403 0.90498 0.93064 0.91052 0.93916 0.94799 0.92749 0.78776 0.82044 0.91318 0.91875 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.63 37.15 0.32 -1.68 16 2 C -0.14 -1.99 4.12 -26.73 -0.11 -2.10 16 3 C 0.17 2.77 0.86 -131.82 -0.11 2.66 16 4 C -0.18 -2.74 7.51 37.16 0.28 -2.46 16 5 C -0.14 -2.46 5.66 37.16 0.21 -2.25 16 6 N -0.58 -12.33 2.24 -161.52 -0.36 -12.69 16 7 C 0.25 6.33 4.55 -5.20 -0.02 6.31 16 8 C -0.52 -14.21 7.79 -34.44 -0.27 -14.48 16 9 H 0.06 1.58 7.37 -52.49 -0.39 1.19 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 12 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 C 0.56 12.27 6.89 -12.62 -0.09 12.18 16 17 O -0.53 -13.61 14.51 5.25 0.08 -13.54 16 18 C -0.14 -2.38 3.26 -104.63 -0.34 -2.73 16 19 C -0.23 -3.28 6.06 29.93 0.18 -3.10 16 20 S 0.13 1.45 22.78 -107.50 -2.45 -0.99 16 21 C -0.25 -3.10 10.91 28.86 0.31 -2.79 16 22 C -0.05 -0.82 5.77 -104.06 -0.60 -1.42 16 23 C -0.11 -1.61 9.93 36.01 0.36 -1.25 16 24 H 0.06 0.77 6.19 -51.93 -0.32 0.45 16 25 H 0.07 1.01 6.91 -51.93 -0.36 0.65 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.08 7.33 -51.93 -0.38 0.70 16 28 H 0.07 0.78 5.99 -51.93 -0.31 0.46 16 29 H 0.05 0.75 7.60 -51.93 -0.39 0.36 16 30 H 0.07 0.92 4.64 -51.94 -0.24 0.68 16 31 H 0.09 1.49 3.78 -68.97 -0.26 1.23 16 32 H 0.08 1.45 5.06 -51.93 -0.26 1.19 16 33 H 0.05 0.71 7.04 -51.93 -0.37 0.34 16 34 H 0.07 1.39 6.92 -51.93 -0.36 1.03 16 35 H 0.04 1.25 7.37 -51.93 -0.38 0.87 16 36 H 0.03 0.87 6.42 -51.93 -0.33 0.54 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.20 2.57 2.35 -52.81 -0.12 2.44 16 39 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 42 H 0.09 1.74 6.05 -51.93 -0.31 1.42 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -31.07 322.86 -7.75 -38.83 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.62 Total: 3.75 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 0.02 Total: -11.46 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.37 Total: -38.10 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.45 Total: -0.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.07 -7.75 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189922631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.242 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds