Wall clock time and date at job start Tue Mar 31 2020 07:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47433 * 2 1 4 4 C 1.52996 * 109.47100 * 132.93145 * 3 2 1 5 5 C 1.53002 * 109.47042 * 12.92875 * 3 2 1 6 6 N 1.46507 * 109.47084 * 252.93048 * 3 2 1 7 7 C 1.46494 * 120.00026 * 91.81977 * 6 3 2 8 8 C 1.50699 * 109.47257 * 86.17995 * 7 6 3 9 9 H 1.07997 * 119.99956 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00252 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00028 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47561 * 59.99649 * 12 10 8 14 14 H 1.48500 * 109.47223 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47066 * 299.99806 * 12 10 8 16 16 C 1.34774 * 119.99973 * 271.82122 * 6 3 2 17 17 O 1.21631 * 120.00228 * 184.56928 * 16 6 3 18 18 C 1.47193 * 119.99997 * 4.57139 * 16 6 3 19 19 C 1.36009 * 123.45934 * 35.41821 * 18 16 6 20 20 S 1.70448 * 110.81511 * 179.89254 * 19 18 16 21 21 C 1.75502 * 92.44508 * 0.32443 * 20 19 18 22 22 C 1.32771 * 110.57526 * 359.81562 * 21 20 19 23 23 C 1.50705 * 123.45620 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.47015 * 304.20798 * 1 2 3 25 25 H 1.09002 * 109.47364 * 64.20408 * 1 2 3 26 26 H 1.08996 * 109.47612 * 184.20686 * 1 2 3 27 27 H 1.08998 * 109.47181 * 240.00039 * 2 1 3 28 28 H 1.09002 * 109.47473 * 120.00014 * 2 1 3 29 29 H 1.09006 * 109.46802 * 238.07279 * 4 3 2 30 30 H 1.08989 * 109.47623 * 358.06822 * 4 3 2 31 31 H 1.08997 * 109.47043 * 118.07897 * 4 3 2 32 32 H 1.09002 * 109.46907 * 300.00244 * 5 3 2 33 33 H 1.09001 * 109.46864 * 59.99973 * 5 3 2 34 34 H 1.08997 * 109.47081 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47462 * 206.17831 * 7 6 3 36 36 H 1.09005 * 109.47420 * 326.18122 * 7 6 3 37 37 H 0.97006 * 119.99859 * 180.02562 * 11 10 8 38 38 H 1.07996 * 124.59167 * 0.02562 * 19 18 16 39 39 H 1.08007 * 124.71225 * 179.78691 * 21 20 19 40 40 H 1.09004 * 109.46874 * 269.97671 * 23 22 21 41 41 H 1.09000 * 109.47458 * 29.97518 * 23 22 21 42 42 H 1.08997 * 109.46703 * 149.98133 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.1363 1.5958 1.0561 5 6 0.8845 2.3920 0.3227 6 7 2.5851 1.7677 -1.3204 7 6 1.7237 2.3716 -2.3400 8 6 1.7107 3.8683 -2.1644 9 1 2.2862 4.3240 -1.3723 10 6 0.9633 4.6557 -3.0144 11 7 0.2622 4.1007 -3.9786 12 14 0.9479 6.5109 -2.7971 13 1 2.3287 7.0378 -2.9413 14 1 0.0737 7.1230 -3.8298 15 1 0.4284 6.8469 -1.4471 16 6 3.8789 1.5114 -1.5972 17 8 4.3529 1.8566 -2.6628 18 6 4.7184 0.8135 -0.6098 19 6 4.2547 -0.1699 0.2073 20 16 5.4971 -0.7539 1.2176 21 6 6.6747 0.3551 0.5369 22 6 6.1176 1.1071 -0.4049 23 6 6.8683 2.1586 -1.1807 24 1 -0.3633 0.5778 0.8499 25 1 -0.3634 0.4472 -0.9253 26 1 -0.3634 -1.0248 0.0754 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8490 2.3693 1.7684 30 1 3.2698 0.6501 1.5812 31 1 4.0710 1.8774 0.5713 32 1 0.1035 2.2828 -0.4297 33 1 0.4790 2.1500 1.3051 34 1 1.2478 3.4197 0.3223 35 1 2.1057 2.1253 -3.3307 36 1 0.7100 1.9847 -2.2349 37 1 -0.2634 4.6547 -4.5768 38 1 3.2377 -0.5331 0.2136 39 1 7.7089 0.4176 0.8420 40 1 6.7984 3.1136 -0.6597 41 1 7.9152 1.8679 -1.2676 42 1 6.4341 2.2551 -2.1758 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189922631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:45 Heat of formation + Delta-G solvation = 32.656565 kcal Electronic energy + Delta-G solvation = -23416.385313 eV Core-core repulsion = 20296.942266 eV Total energy + Delta-G solvation = -3119.443046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.24851 -38.63762 -38.33330 -35.32893 -33.80985 -32.98607 -30.64537 -29.67618 -28.46415 -27.60652 -25.92418 -24.99433 -23.68245 -22.29502 -20.48450 -18.71462 -18.55738 -18.40860 -17.63906 -16.99041 -16.20049 -16.11039 -15.84565 -15.74237 -14.89433 -14.72663 -14.60404 -14.23969 -13.99120 -13.76188 -13.60620 -13.44167 -13.17132 -13.06278 -12.94707 -12.78932 -12.65269 -12.51412 -12.34050 -12.31534 -12.06510 -12.01127 -11.79926 -11.59133 -11.45695 -11.33622 -10.62020 -10.56817 -9.43428 -9.35517 -8.93696 -8.19914 -6.32072 -0.03623 0.74707 1.02140 1.13938 1.34370 1.38201 1.45300 2.15335 2.39424 2.44332 3.09336 3.71165 3.74874 3.78797 3.93498 4.09549 4.29576 4.33109 4.46609 4.56738 4.66109 4.68116 4.72214 4.75822 4.83166 4.84520 4.93654 4.99069 5.01917 5.05281 5.13716 5.19682 5.24791 5.32959 5.39844 5.46404 5.57384 5.62147 5.66539 5.90415 6.09534 6.72901 6.80608 7.29806 7.48056 8.86973 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.006096 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.128835 B = 4592.391474 C = 5506.338082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.156 3.844 4 C -0.179 4.179 5 C -0.138 4.138 6 N -0.586 5.586 7 C 0.268 3.732 8 C -0.524 4.524 9 H 0.049 0.951 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.959 3.041 13 H -0.281 1.281 14 H -0.279 1.279 15 H -0.261 1.261 16 C 0.554 3.446 17 O -0.592 6.592 18 C -0.168 4.168 19 C -0.234 4.234 20 S 0.230 5.770 21 C -0.236 4.236 22 C -0.086 4.086 23 C -0.102 4.102 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.041 0.959 35 H -0.009 1.009 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.204 0.796 39 H 0.194 0.806 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -11.400 16.965 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.072 3.928 4 C -0.236 4.236 5 C -0.195 4.195 6 N -0.316 5.316 7 C 0.147 3.853 8 C -0.562 4.562 9 H 0.067 0.933 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.784 3.216 13 H -0.206 1.206 14 H -0.204 1.204 15 H -0.185 1.185 16 C 0.342 3.658 17 O -0.475 6.475 18 C -0.185 4.185 19 C -0.370 4.370 20 S 0.496 5.504 21 C -0.370 4.370 22 C -0.097 4.097 23 C -0.161 4.161 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.009 0.991 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.220 0.780 39 H 0.211 0.789 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.393 -12.305 17.408 22.563 hybrid contribution -0.462 2.506 -2.154 3.337 sum 6.931 -9.799 15.254 19.410 Atomic orbital electron populations 1.21950 0.94302 1.02487 1.01953 1.22410 0.97884 0.94726 1.02671 1.20784 0.94856 0.95532 0.81674 1.23908 0.98938 1.03048 0.97715 1.22216 0.97178 0.98318 1.01780 1.48365 1.09220 1.59252 1.14738 1.18667 0.88639 0.92280 0.85682 1.21524 1.27645 0.92484 1.14592 0.93287 1.25754 0.95088 1.03433 0.94609 1.70041 1.30876 1.37351 1.18543 0.85599 0.77799 0.79693 0.78536 1.20642 1.20376 1.18512 1.18320 0.82198 0.78907 0.86364 1.90677 1.73244 1.55546 1.28009 1.19768 0.94699 1.02478 1.01560 1.27029 1.07718 1.01852 1.00403 1.82504 0.96241 1.35979 1.35635 1.25503 1.05514 1.02715 1.03303 1.19858 0.91342 0.99884 0.98627 1.20567 0.99991 0.96170 0.99409 0.90368 0.95039 0.90951 0.92587 0.87090 0.92037 0.87687 0.91039 0.92997 0.88921 0.94021 0.99131 0.95513 0.92564 0.78001 0.78888 0.91613 0.88967 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.63 71.98 0.62 -3.06 16 2 C -0.14 -3.60 4.12 30.59 0.13 -3.47 16 3 C 0.16 5.15 0.86 3.60 0.00 5.16 16 4 C -0.18 -4.95 7.51 71.98 0.54 -4.41 16 5 C -0.14 -4.72 5.66 71.98 0.41 -4.31 16 6 N -0.59 -26.33 2.24 -783.17 -1.76 -28.08 16 7 C 0.27 14.85 4.55 85.63 0.39 15.24 16 8 C -0.52 -30.51 7.79 25.60 0.20 -30.31 16 9 H 0.05 2.87 7.37 -2.91 -0.02 2.85 16 10 C 0.01 0.58 5.46 84.66 0.46 1.04 16 11 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 12 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 16 C 0.55 25.62 6.89 86.60 0.60 26.21 16 17 O -0.59 -33.17 14.51 -4.13 -0.06 -33.23 16 18 C -0.17 -5.79 3.26 -19.87 -0.06 -5.85 16 19 C -0.23 -5.91 6.06 67.30 0.41 -5.50 16 20 S 0.23 3.99 22.78 -56.49 -1.29 2.71 16 21 C -0.24 -4.99 10.91 66.64 0.73 -4.26 16 22 C -0.09 -2.59 5.77 -19.46 -0.11 -2.70 16 23 C -0.10 -3.20 9.93 71.24 0.71 -2.49 16 24 H 0.08 1.67 6.19 -2.39 -0.01 1.66 16 25 H 0.03 0.98 6.91 -2.39 -0.02 0.96 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.65 7.33 -2.39 -0.02 1.64 16 28 H 0.11 1.95 5.99 -2.39 -0.01 1.93 16 29 H 0.06 1.59 7.60 -2.38 -0.02 1.57 16 30 H 0.11 2.14 4.64 -2.39 -0.01 2.13 16 31 H 0.07 2.34 3.78 -18.40 -0.07 2.27 16 32 H 0.05 2.03 5.06 -2.39 -0.01 2.01 16 33 H 0.09 2.35 7.04 -2.39 -0.02 2.33 16 34 H 0.04 1.65 6.92 -2.39 -0.02 1.63 16 35 H -0.01 -0.61 7.37 -2.39 -0.02 -0.63 16 36 H 0.03 1.50 6.42 -2.38 -0.02 1.49 16 37 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 38 H 0.20 4.65 2.35 -3.21 -0.01 4.65 16 39 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.09 2.20 8.13 -2.39 -0.02 2.18 16 42 H 0.05 2.06 6.05 -2.39 -0.01 2.05 16 Total: -1.00 -75.75 322.86 5.20 -70.54 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.99 Total: 15.54 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.01 Total: -18.73 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.47 Total: -84.60 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.06 Total: -33.23 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.29 Total: 2.71 kcal Total: -75.75 5.20 -70.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189922631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.199 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds