Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 C 1.50706 * 109.46804 * 180.02562 * 3 2 1 5 5 S 1.70612 * 124.52428 * 270.02846 * 4 3 2 6 6 C 1.75831 * 91.56339 * 179.97438 * 5 4 3 7 7 C 1.46586 * 125.45888 * 179.97438 * 6 5 4 8 8 O 1.21697 * 119.99999 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00074 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 C 1.36653 * 109.08311 * 0.24329 * 6 5 4 22 22 C 1.33815 * 124.51934 * 90.00558 * 4 3 2 23 23 C 1.50701 * 122.45240 * 0.03988 * 22 4 3 24 24 C 1.52999 * 109.47201 * 84.99881 * 23 22 4 25 25 H 1.08999 * 109.47309 * 59.99704 * 1 2 3 26 26 H 1.09007 * 109.46772 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46550 * 299.99376 * 1 2 3 28 28 H 1.09008 * 109.46961 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47424 * 120.00840 * 2 1 3 30 30 H 1.09001 * 109.47005 * 60.00903 * 3 2 1 31 31 H 1.08999 * 109.47377 * 300.00255 * 3 2 1 32 32 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 36 36 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 37 37 H 1.07995 * 123.35089 * 179.75835 * 21 6 5 38 38 H 1.09002 * 109.47456 * 205.00180 * 23 22 4 39 39 H 1.09002 * 109.47030 * 324.99918 * 23 22 4 40 40 H 1.08997 * 109.46990 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.47159 * 300.00480 * 24 23 22 42 42 H 1.09002 * 109.47098 * 60.00079 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 16 4.5146 1.4416 1.4046 6 6 5.9895 1.4414 0.4473 7 6 7.3528 1.4412 0.9859 8 8 8.3059 1.4415 0.2293 9 7 7.5507 1.4406 2.3191 10 6 8.9132 1.4398 2.8574 11 1 9.5606 2.0293 2.2082 12 6 9.4332 0.0026 2.9272 13 6 8.9075 2.0398 4.2398 14 1 7.9814 2.3865 4.6741 15 6 10.0844 2.1459 4.9500 16 7 11.2120 1.7232 4.4214 17 14 10.0773 2.8890 6.6639 18 1 8.6922 3.2823 7.0272 19 1 10.5789 1.8879 7.6395 20 1 10.9549 4.0866 6.6880 21 6 5.6612 1.4475 -0.8791 22 6 4.3049 1.4428 -1.1035 23 6 3.7148 1.4440 -2.4902 24 6 3.4002 2.8814 -2.9093 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 6.7909 1.4400 2.9222 33 1 8.7857 -0.5869 3.5764 34 1 10.4471 0.0022 3.3274 35 1 9.4373 -0.4313 1.9273 36 1 12.0401 1.7983 4.9209 37 1 6.3942 1.4525 -1.6722 38 1 4.4292 1.0097 -3.1895 39 1 2.7975 0.8551 -2.4952 40 1 2.9738 2.8823 -3.9124 41 1 2.6858 3.3158 -2.2099 42 1 4.3174 3.4704 -2.9042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194717797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = -41.317637 kcal Electronic energy + Delta-G solvation = -21152.711554 eV Core-core repulsion = 18030.060745 eV Total energy + Delta-G solvation = -3122.650808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.31932 -38.37725 -35.12415 -34.71511 -32.72974 -32.36425 -30.20380 -28.99439 -26.61010 -25.26026 -24.20134 -23.30162 -21.65013 -20.85851 -19.61988 -18.66819 -17.75688 -16.71307 -15.73602 -15.30335 -14.97625 -14.77652 -14.50364 -14.21816 -14.03686 -13.74441 -13.62806 -13.13341 -12.88960 -12.66982 -12.42937 -12.13951 -11.97947 -11.73201 -11.65890 -11.47431 -11.31745 -11.14771 -11.05168 -10.95202 -10.92674 -10.73782 -10.54935 -10.30884 -10.24354 -9.24974 -9.05162 -8.57521 -8.50712 -8.31972 -7.92306 -6.12908 -4.22263 0.72125 1.61771 2.04460 2.52074 3.23928 3.31563 3.34591 3.85007 4.03445 4.37515 4.51660 4.70998 4.79233 4.88321 4.97545 5.14911 5.19571 5.25823 5.28773 5.42724 5.50402 5.53376 5.58456 5.59609 5.73996 5.74374 5.85283 5.91337 6.00571 6.10885 6.13480 6.42023 6.54504 6.82544 6.95790 7.13748 7.40722 7.53941 7.68169 7.90054 8.13282 8.60357 8.75708 9.04012 9.44985 10.93244 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.003479 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.693856 B = 8045.602154 C = 8717.739219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.048 4.048 4 C -0.207 4.207 5 S 0.193 5.807 6 C -0.242 4.242 7 C 0.573 3.427 8 O -0.543 6.543 9 N -0.702 5.702 10 C 0.264 3.736 11 H 0.051 0.949 12 C -0.148 4.148 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.065 4.065 22 C -0.113 4.113 23 C -0.062 4.062 24 C -0.147 4.147 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.386 0.614 33 H 0.027 0.973 34 H 0.092 0.908 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.642 -1.604 -9.802 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.087 4.087 4 C -0.326 4.326 5 S 0.463 5.537 6 C -0.363 4.363 7 C 0.357 3.643 8 O -0.423 6.423 9 N -0.349 5.349 10 C 0.163 3.837 11 H 0.069 0.931 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.102 4.102 24 C -0.204 4.204 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.218 0.782 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.167 0.833 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.013 -1.614 -8.651 21.862 hybrid contribution 0.066 0.372 -0.279 0.470 sum -19.946 -1.243 -8.930 21.890 Atomic orbital electron populations 1.21780 0.95496 1.01814 1.01849 1.21559 0.95680 0.95843 1.02794 1.20196 0.87498 0.97806 1.03220 1.23936 1.00668 1.10484 0.97517 1.83023 0.94579 1.68510 1.07586 1.24944 0.97525 1.16015 0.97808 1.17025 0.86021 0.77808 0.83450 1.90778 1.41640 1.51662 1.58237 1.46481 1.11824 1.71881 1.04722 1.18809 0.76739 0.94199 0.93928 0.93095 1.22089 1.03852 0.97225 0.97464 1.21245 0.94598 1.41465 0.99964 0.91977 1.24886 0.95215 0.95128 0.98439 1.69911 0.98635 1.45840 1.37645 0.86380 0.78201 0.78865 0.83593 1.19683 1.20831 1.20830 1.20557 0.95330 0.98445 0.95381 1.18581 0.92455 1.05670 0.95932 1.20226 1.00500 0.97647 0.91805 1.21751 1.01899 0.96137 1.00652 0.92682 0.92560 0.92637 0.91564 0.91643 0.90871 0.89956 0.78158 0.95385 0.88967 0.96542 0.92584 0.83333 0.91000 0.91144 0.92559 0.92688 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.05 -0.42 5.04 -27.88 -0.14 -0.56 16 4 C -0.21 -2.41 5.53 -35.86 -0.20 -2.61 16 5 S 0.19 2.60 22.10 -107.50 -2.38 0.23 16 6 C -0.24 -4.18 6.45 -36.79 -0.24 -4.42 16 7 C 0.57 12.47 7.75 -12.89 -0.10 12.37 16 8 O -0.54 -13.73 16.50 5.19 0.09 -13.64 16 9 N -0.70 -15.60 5.06 -56.28 -0.28 -15.88 16 10 C 0.26 6.93 2.56 -69.09 -0.18 6.75 16 11 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 13 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.06 -0.99 9.78 -40.43 -0.40 -1.38 16 22 C -0.11 -1.40 5.04 -106.45 -0.54 -1.93 16 23 C -0.06 -0.59 5.54 -27.88 -0.15 -0.74 16 24 C -0.15 -1.26 9.83 37.16 0.37 -0.89 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.54 7.75 -51.92 -0.40 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.64 6.39 -51.93 -0.33 0.31 16 32 H 0.39 7.60 7.65 -40.82 -0.31 7.29 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.07 0.66 8.11 -51.93 -0.42 0.23 16 39 H 0.07 0.58 7.06 -51.93 -0.37 0.21 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.46 7.24 -51.93 -0.38 0.08 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -30.58 357.72 -9.68 -40.26 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.69 Total: 3.86 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.41 Total: -11.54 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.34 Total: -40.30 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.38 Total: 0.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.58 -9.68 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194717797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.057 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds