Wall clock time and date at job start Tue Mar 31 2020 06:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 C 1.50706 * 109.46804 * 180.02562 * 3 2 1 5 5 S 1.70612 * 124.52428 * 270.02846 * 4 3 2 6 6 C 1.75831 * 91.56339 * 179.97438 * 5 4 3 7 7 C 1.46586 * 125.45888 * 179.97438 * 6 5 4 8 8 O 1.21697 * 119.99999 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00074 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 C 1.36653 * 109.08311 * 0.24329 * 6 5 4 22 22 C 1.33815 * 124.51934 * 90.00558 * 4 3 2 23 23 C 1.50701 * 122.45240 * 0.03988 * 22 4 3 24 24 C 1.52999 * 109.47201 * 84.99881 * 23 22 4 25 25 H 1.08999 * 109.47309 * 59.99704 * 1 2 3 26 26 H 1.09007 * 109.46772 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46550 * 299.99376 * 1 2 3 28 28 H 1.09008 * 109.46961 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47424 * 120.00840 * 2 1 3 30 30 H 1.09001 * 109.47005 * 60.00903 * 3 2 1 31 31 H 1.08999 * 109.47377 * 300.00255 * 3 2 1 32 32 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 36 36 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 37 37 H 1.07995 * 123.35089 * 179.75835 * 21 6 5 38 38 H 1.09002 * 109.47456 * 205.00180 * 23 22 4 39 39 H 1.09002 * 109.47030 * 324.99918 * 23 22 4 40 40 H 1.08997 * 109.46990 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.47159 * 300.00480 * 24 23 22 42 42 H 1.09002 * 109.47098 * 60.00079 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 16 4.5146 1.4416 1.4046 6 6 5.9895 1.4414 0.4473 7 6 7.3528 1.4412 0.9859 8 8 8.3059 1.4415 0.2293 9 7 7.5507 1.4406 2.3191 10 6 8.9132 1.4398 2.8574 11 1 9.5606 2.0293 2.2082 12 6 9.4332 0.0026 2.9272 13 6 8.9075 2.0398 4.2398 14 1 7.9814 2.3865 4.6741 15 6 10.0844 2.1459 4.9500 16 7 11.2120 1.7232 4.4214 17 14 10.0773 2.8890 6.6639 18 1 8.6922 3.2823 7.0272 19 1 10.5789 1.8879 7.6395 20 1 10.9549 4.0866 6.6880 21 6 5.6612 1.4475 -0.8791 22 6 4.3049 1.4428 -1.1035 23 6 3.7148 1.4440 -2.4902 24 6 3.4002 2.8814 -2.9093 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 6.7909 1.4400 2.9222 33 1 8.7857 -0.5869 3.5764 34 1 10.4471 0.0022 3.3274 35 1 9.4373 -0.4313 1.9273 36 1 12.0401 1.7983 4.9209 37 1 6.3942 1.4525 -1.6722 38 1 4.4292 1.0097 -3.1895 39 1 2.7975 0.8551 -2.4952 40 1 2.9738 2.8823 -3.9124 41 1 2.6858 3.3158 -2.2099 42 1 4.3174 3.4704 -2.9042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194717797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:52 Heat of formation + Delta-G solvation = -58.465105 kcal Electronic energy + Delta-G solvation = -21153.455124 eV Core-core repulsion = 18030.060745 eV Total energy + Delta-G solvation = -3123.394378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79831 -39.68174 -36.81127 -35.76369 -34.41747 -33.56757 -31.45603 -30.52576 -27.69587 -27.36205 -25.01598 -24.60104 -22.53283 -22.29956 -21.35976 -19.88609 -19.11487 -18.24127 -17.37513 -16.95922 -16.36310 -16.03922 -15.78573 -15.50629 -14.96052 -14.77066 -14.72910 -14.48596 -14.32693 -13.83224 -13.79007 -13.45628 -13.05304 -12.94967 -12.85309 -12.77475 -12.71929 -12.39427 -12.36966 -12.32563 -12.13814 -12.00828 -11.80029 -11.70846 -11.36810 -11.15603 -11.03830 -10.64730 -9.97762 -9.59620 -9.32879 -8.20906 -6.39273 -0.48291 0.47323 0.93998 1.36860 1.43762 1.44125 1.56987 2.22833 2.29578 2.51701 3.09537 3.69337 3.86884 4.06409 4.09878 4.17898 4.26941 4.38631 4.55436 4.63064 4.67554 4.73236 4.75701 4.85311 4.86329 4.96815 5.00489 5.01187 5.03557 5.14590 5.25029 5.29839 5.35348 5.38121 5.46319 5.49987 5.51640 5.57604 5.61450 5.82692 6.03169 6.65967 6.79075 7.22940 7.38461 8.86065 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.003479 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.693856 B = 8045.602154 C = 8717.739219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.049 4.049 4 C -0.181 4.181 5 S 0.221 5.779 6 C -0.294 4.294 7 C 0.572 3.428 8 O -0.592 6.592 9 N -0.700 5.700 10 C 0.271 3.729 11 H 0.002 0.998 12 C -0.134 4.134 13 C -0.550 4.550 14 H 0.073 0.927 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.976 3.024 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.282 1.282 21 C -0.053 4.053 22 C -0.124 4.124 23 C -0.060 4.060 24 C -0.145 4.145 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.399 0.601 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.011 0.989 36 H 0.267 0.733 37 H 0.140 0.860 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.254 -1.353 -9.407 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.088 4.088 4 C -0.301 4.301 5 S 0.491 5.509 6 C -0.414 4.414 7 C 0.359 3.641 8 O -0.476 6.476 9 N -0.348 5.348 10 C 0.168 3.832 11 H 0.019 0.981 12 C -0.193 4.193 13 C -0.589 4.589 14 H 0.091 0.909 15 C -0.185 4.185 16 N -0.554 5.554 17 Si 0.800 3.200 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.208 1.208 21 C -0.087 4.087 22 C -0.136 4.136 23 C -0.099 4.099 24 C -0.203 4.203 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.234 0.766 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -23.669 -1.367 -8.247 25.101 hybrid contribution 1.090 0.284 -0.499 1.232 sum -22.579 -1.083 -8.747 24.238 Atomic orbital electron populations 1.21757 0.94042 1.02315 1.02543 1.21546 0.96899 0.94883 1.02411 1.20401 0.84806 0.98852 1.04780 1.24450 1.02256 1.07049 0.96354 1.82845 0.92423 1.67938 1.07649 1.24463 0.96716 1.20960 0.99296 1.17578 0.87622 0.76173 0.82726 1.90730 1.43954 1.53773 1.59109 1.46215 1.10754 1.72381 1.05443 1.18440 0.78049 0.93620 0.93108 0.98054 1.21914 1.02917 0.97210 0.97259 1.21535 0.95301 1.41864 1.00150 0.90931 1.25826 0.94658 0.95320 1.02660 1.70053 0.99345 1.46661 1.39384 0.85241 0.78693 0.77835 0.78245 1.18327 1.20153 1.20782 1.20755 0.96844 0.96622 0.94465 1.18765 0.91031 1.05950 0.97876 1.20306 1.01205 0.98651 0.89765 1.21747 1.01377 0.95147 1.01993 0.91669 0.92233 0.92290 0.91600 0.92522 0.89716 0.87999 0.76607 0.93969 0.90976 0.96974 0.92368 0.84267 0.90899 0.89062 0.90598 0.92132 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 3 C -0.05 -0.67 5.04 29.85 0.15 -0.52 16 4 C -0.18 -3.77 5.53 24.68 0.14 -3.63 16 5 S 0.22 5.67 22.10 -56.49 -1.25 4.42 16 6 C -0.29 -10.35 6.45 24.08 0.16 -10.19 16 7 C 0.57 26.11 7.75 86.42 0.67 26.78 16 8 O -0.59 -31.95 16.50 -4.34 -0.07 -32.02 16 9 N -0.70 -32.23 5.06 -450.18 -2.28 -34.51 16 10 C 0.27 14.81 2.56 44.24 0.11 14.92 16 11 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 12 C -0.13 -7.12 9.26 71.98 0.67 -6.45 16 13 C -0.55 -30.12 8.73 25.60 0.22 -29.90 16 14 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 15 C 0.02 0.85 5.30 84.66 0.45 1.30 16 16 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 17 Si 0.98 42.47 29.54 68.60 2.03 44.49 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.05 -1.62 9.78 21.72 0.21 -1.40 16 22 C -0.12 -2.84 5.04 -21.05 -0.11 -2.95 16 23 C -0.06 -0.97 5.54 29.85 0.17 -0.80 16 24 C -0.15 -2.09 9.83 71.98 0.71 -1.39 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.85 7.75 -2.38 -0.02 0.83 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.09 6.39 -2.39 -0.02 1.07 16 32 H 0.40 15.95 7.65 -92.70 -0.71 15.24 16 33 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 4.11 6.07 -2.39 -0.01 4.10 16 35 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.07 1.18 8.11 -2.39 -0.02 1.17 16 39 H 0.09 1.13 7.06 -2.39 -0.02 1.11 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.80 7.24 -2.39 -0.02 0.79 16 42 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -69.02 357.72 3.41 -65.62 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.30 Total: 21.27 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.44 Total: -16.19 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.04 Total: -87.58 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.07 Total: -32.02 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.25 Total: 4.42 kcal Total: -69.02 3.41 -65.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194717797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.150 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds