Wall clock time and date at job start Tue Mar 31 2020 08:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 N 1.46501 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00049 * 275.08537 * 4 3 2 6 6 H 1.07999 * 119.99484 * 321.73585 * 5 4 3 7 7 C 1.38806 * 120.00188 * 141.73167 * 5 4 3 8 8 N 1.31617 * 120.00084 * 340.73125 * 7 5 4 9 9 Si 1.86798 * 120.00170 * 160.72895 * 7 5 4 10 10 H 1.48503 * 109.47537 * 89.99620 * 9 7 5 11 11 H 1.48498 * 109.47232 * 210.00360 * 9 7 5 12 12 H 1.48508 * 109.47145 * 329.99965 * 9 7 5 13 13 C 1.46497 * 120.00212 * 95.08648 * 4 3 2 14 14 C 1.50697 * 109.47192 * 89.99827 * 13 4 3 15 15 C 1.38139 * 119.98839 * 259.99742 * 14 13 4 16 16 C 1.38428 * 120.00488 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.98392 * 179.76908 * 16 15 14 18 18 C 1.38442 * 120.03526 * 0.05051 * 16 15 14 19 19 C 1.38227 * 120.08933 * 0.03897 * 18 16 15 20 20 C 1.38621 * 119.93445 * 359.89323 * 19 18 16 21 21 O 1.36022 * 120.53030 * 180.23585 * 20 19 18 22 22 C 1.43046 * 116.85418 * 343.40988 * 21 20 19 23 23 O 1.43267 * 108.59907 * 47.46240 * 22 21 20 24 24 C 1.43085 * 113.02893 * 294.51335 * 23 22 21 25 25 H 1.08997 * 109.47562 * 59.99806 * 1 2 3 26 26 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47366 * 299.99735 * 1 2 3 28 28 H 1.09001 * 109.46852 * 240.00205 * 2 1 3 29 29 H 1.08997 * 109.47562 * 120.00194 * 2 1 3 30 30 H 1.09001 * 109.47181 * 60.00407 * 3 2 1 31 31 H 1.08995 * 109.47392 * 299.99706 * 3 2 1 32 32 H 0.97000 * 120.00024 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47060 * 329.99896 * 13 4 3 34 34 H 1.09008 * 109.47136 * 210.00158 * 13 4 3 35 35 H 1.08001 * 119.99587 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.95953 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.62016 * 167.19969 * 22 21 20 38 38 H 1.08998 * 109.61311 * 287.55108 * 22 21 20 39 39 H 1.08998 * 109.49600 * 168.54954 * 24 23 22 40 40 H 1.08989 * 109.49709 * 288.61674 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.3372 1.1804 6 1 3.8245 1.8401 2.0634 7 6 5.3545 0.5842 1.2424 8 7 5.6043 -0.3188 0.3181 9 14 6.5671 0.8524 2.6379 10 1 6.2228 -0.0426 3.7718 11 1 7.9412 0.5466 2.1653 12 1 6.5011 2.2667 3.0860 13 6 4.2369 1.5552 -1.2646 14 6 4.4880 3.0090 -1.5718 15 6 3.6802 3.6734 -2.4742 16 6 3.9102 5.0090 -2.7563 17 9 3.1229 5.6572 -3.6424 18 6 4.9502 5.6794 -2.1353 19 6 5.7612 5.0166 -1.2333 20 6 5.5312 3.6795 -0.9488 21 8 6.3188 3.0168 -0.0596 22 6 7.5707 3.6240 0.2725 23 8 7.3435 5.0074 0.5676 24 6 6.8940 5.7552 -0.5664 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4179 -0.8453 0.3617 33 1 3.6476 1.1108 -2.0666 34 1 5.1894 1.0317 -1.1808 35 1 2.8693 3.1508 -2.9597 36 1 5.1282 6.7215 -2.3560 37 1 7.9975 3.1290 1.1448 38 1 8.2557 3.5347 -0.5706 39 1 6.5472 6.7360 -0.2411 40 1 7.7160 5.8755 -1.2719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194969464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:38 Heat of formation + Delta-G solvation = -84.070413 kcal Electronic energy + Delta-G solvation = -25115.085970 eV Core-core repulsion = 21424.368086 eV Total energy + Delta-G solvation = -3690.717884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.48103 -40.47922 -37.61103 -36.08851 -35.73232 -32.91908 -31.95233 -30.56881 -29.58225 -26.25047 -26.00031 -25.57153 -25.23516 -22.37275 -21.09849 -20.64345 -19.78943 -18.12667 -17.03261 -16.98485 -16.51138 -15.74206 -15.31913 -15.02262 -14.82431 -14.65002 -14.26394 -14.02038 -13.91986 -13.65788 -13.28172 -12.97936 -12.94922 -12.70234 -12.33844 -11.74769 -11.65817 -11.43473 -11.24552 -10.95544 -10.73278 -10.71468 -10.53841 -10.32955 -10.27537 -10.00950 -9.93713 -9.79415 -9.64005 -8.45520 -8.40006 -7.53754 -6.55274 -5.75520 -3.30015 1.50211 1.67949 3.30663 3.39518 3.49359 3.63617 3.88557 4.00155 4.50805 4.55365 4.93351 4.97324 5.03206 5.32762 5.39935 5.43890 5.46736 5.54879 5.68069 5.76648 5.79715 5.88159 5.97845 6.17869 6.23369 6.31827 6.41773 6.44683 6.56484 6.59093 6.68521 6.78527 6.85320 7.03939 7.10954 7.19117 7.31437 7.64867 7.87256 7.92987 8.56647 9.21016 9.84508 10.40663 11.26621 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.008838 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.769569 B = 3167.429381 C = 5244.274447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.149 3.851 4 N -0.572 5.572 5 C -0.242 4.242 6 H 0.054 0.946 7 C 0.035 3.965 8 N -0.886 5.886 9 Si 0.883 3.117 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.273 1.273 13 C 0.180 3.820 14 C -0.073 4.073 15 C -0.124 4.124 16 C 0.056 3.944 17 F -0.150 7.150 18 C -0.131 4.131 19 C -0.193 4.193 20 C 0.149 3.851 21 O -0.273 6.273 22 C 0.215 3.785 23 O -0.388 6.388 24 C 0.108 3.892 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.253 0.747 33 H 0.035 0.965 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 8.123 -4.940 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.023 3.977 4 N -0.290 5.290 5 C -0.372 4.372 6 H 0.072 0.928 7 C -0.166 4.166 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.198 1.198 13 C 0.054 3.946 14 C -0.078 4.078 15 C -0.144 4.144 16 C 0.037 3.963 17 F -0.129 7.129 18 C -0.150 4.150 19 C -0.194 4.194 20 C 0.102 3.898 21 O -0.186 6.186 22 C 0.102 3.898 23 O -0.308 6.308 24 C 0.032 3.968 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.743 7.888 -4.666 9.195 hybrid contribution 0.627 0.407 0.297 0.805 sum 1.370 8.295 -4.368 9.475 Atomic orbital electron populations 1.21762 0.97900 1.00266 1.00621 1.22037 0.92818 1.00616 1.02242 1.20937 0.85091 0.93534 0.98093 1.43736 0.99268 1.83061 1.02946 1.18865 1.06071 1.23691 0.88535 0.92790 1.24932 1.00041 0.94590 0.97002 1.69906 1.25865 1.21482 1.35570 0.86646 0.81168 0.78455 0.82448 1.21780 1.21501 1.19825 1.19986 1.01082 0.86353 0.87174 1.20686 0.92321 1.01703 0.93053 1.20888 1.00850 0.92346 1.00275 1.17459 0.93293 0.91447 0.94119 1.91428 1.73291 1.81630 1.66587 1.20344 0.95835 0.99965 0.98900 1.20034 1.02001 0.94391 1.02978 1.18405 0.92397 0.88913 0.90074 1.86774 1.29248 1.46008 1.56594 1.24406 0.85363 0.79303 1.00739 1.88263 1.86174 1.21602 1.34752 1.21402 0.93174 0.94663 0.87549 0.93743 0.93897 0.93485 0.92953 0.91776 0.94416 0.94846 0.93709 0.94613 0.86898 0.84993 0.85408 0.85287 0.92660 0.87417 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.69 6.23 -26.73 -0.17 -2.85 16 3 C 0.15 3.12 5.68 -4.04 -0.02 3.10 16 4 N -0.57 -13.72 2.41 -174.61 -0.42 -14.14 16 5 C -0.24 -6.39 8.60 -15.06 -0.13 -6.52 16 6 H 0.05 1.49 7.90 -52.49 -0.41 1.07 16 7 C 0.03 0.91 3.84 -17.43 -0.07 0.84 16 8 N -0.89 -24.10 11.38 55.49 0.63 -23.47 16 9 Si 0.88 20.98 27.82 -169.99 -4.73 16.26 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.18 4.08 5.06 -5.20 -0.03 4.06 16 14 C -0.07 -1.49 5.48 -104.46 -0.57 -2.07 16 15 C -0.12 -2.21 9.64 -39.55 -0.38 -2.59 16 16 C 0.06 0.94 7.30 -39.44 -0.29 0.65 16 17 F -0.15 -2.44 17.27 2.25 0.04 -2.40 16 18 C -0.13 -2.04 9.69 -39.51 -0.38 -2.42 16 19 C -0.19 -3.27 5.82 -104.45 -0.61 -3.88 16 20 C 0.15 3.00 6.53 -39.24 -0.26 2.75 16 21 O -0.27 -5.85 6.84 -43.69 -0.30 -6.15 16 22 C 0.22 3.77 7.90 101.05 0.80 4.57 16 23 O -0.39 -6.64 10.97 -59.11 -0.65 -7.29 16 24 C 0.11 1.54 6.87 36.04 0.25 1.79 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 32 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.04 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.11 2.89 5.17 -51.92 -0.27 2.62 16 35 H 0.13 2.15 8.04 -52.49 -0.42 1.73 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.21 7.06 -51.93 -0.37 1.84 16 38 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 39 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 0.77 8.14 -51.94 -0.42 0.35 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -28.42 330.26 -7.60 -36.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.66 Total: 0.71 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.49 Total: -4.50 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.21 Total: -37.61 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.95 Total: -13.44 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.73 Total: 16.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.42 -7.60 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194969464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.053 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds