Wall clock time and date at job start Tue Mar 31 2020 08:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 N 1.46501 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00049 * 275.08537 * 4 3 2 6 6 H 1.07999 * 119.99484 * 321.73585 * 5 4 3 7 7 C 1.38806 * 120.00188 * 141.73167 * 5 4 3 8 8 N 1.31617 * 120.00084 * 340.73125 * 7 5 4 9 9 Si 1.86798 * 120.00170 * 160.72895 * 7 5 4 10 10 H 1.48503 * 109.47537 * 89.99620 * 9 7 5 11 11 H 1.48498 * 109.47232 * 210.00360 * 9 7 5 12 12 H 1.48508 * 109.47145 * 329.99965 * 9 7 5 13 13 C 1.46497 * 120.00212 * 95.08648 * 4 3 2 14 14 C 1.50697 * 109.47192 * 89.99827 * 13 4 3 15 15 C 1.38139 * 119.98839 * 259.99742 * 14 13 4 16 16 C 1.38428 * 120.00488 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.98392 * 179.76908 * 16 15 14 18 18 C 1.38442 * 120.03526 * 0.05051 * 16 15 14 19 19 C 1.38227 * 120.08933 * 0.03897 * 18 16 15 20 20 C 1.38621 * 119.93445 * 359.89323 * 19 18 16 21 21 O 1.36022 * 120.53030 * 180.23585 * 20 19 18 22 22 C 1.43046 * 116.85418 * 343.40988 * 21 20 19 23 23 O 1.43267 * 108.59907 * 47.46240 * 22 21 20 24 24 C 1.43085 * 113.02893 * 294.51335 * 23 22 21 25 25 H 1.08997 * 109.47562 * 59.99806 * 1 2 3 26 26 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47366 * 299.99735 * 1 2 3 28 28 H 1.09001 * 109.46852 * 240.00205 * 2 1 3 29 29 H 1.08997 * 109.47562 * 120.00194 * 2 1 3 30 30 H 1.09001 * 109.47181 * 60.00407 * 3 2 1 31 31 H 1.08995 * 109.47392 * 299.99706 * 3 2 1 32 32 H 0.97000 * 120.00024 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47060 * 329.99896 * 13 4 3 34 34 H 1.09008 * 109.47136 * 210.00158 * 13 4 3 35 35 H 1.08001 * 119.99587 * 359.97438 * 15 14 13 36 36 H 1.08001 * 119.95953 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.62016 * 167.19969 * 22 21 20 38 38 H 1.08998 * 109.61311 * 287.55108 * 22 21 20 39 39 H 1.08998 * 109.49600 * 168.54954 * 24 23 22 40 40 H 1.08989 * 109.49709 * 288.61674 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.3372 1.1804 6 1 3.8245 1.8401 2.0634 7 6 5.3545 0.5842 1.2424 8 7 5.6043 -0.3188 0.3181 9 14 6.5671 0.8524 2.6379 10 1 6.2228 -0.0426 3.7718 11 1 7.9412 0.5466 2.1653 12 1 6.5011 2.2667 3.0860 13 6 4.2369 1.5552 -1.2646 14 6 4.4880 3.0090 -1.5718 15 6 3.6802 3.6734 -2.4742 16 6 3.9102 5.0090 -2.7563 17 9 3.1229 5.6572 -3.6424 18 6 4.9502 5.6794 -2.1353 19 6 5.7612 5.0166 -1.2333 20 6 5.5312 3.6795 -0.9488 21 8 6.3188 3.0168 -0.0596 22 6 7.5707 3.6240 0.2725 23 8 7.3435 5.0074 0.5676 24 6 6.8940 5.7552 -0.5664 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4179 -0.8453 0.3617 33 1 3.6476 1.1108 -2.0666 34 1 5.1894 1.0317 -1.1808 35 1 2.8693 3.1508 -2.9597 36 1 5.1282 6.7215 -2.3560 37 1 7.9975 3.1290 1.1448 38 1 8.2557 3.5347 -0.5706 39 1 6.5472 6.7360 -0.2411 40 1 7.7160 5.8755 -1.2719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194969464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:38 Heat of formation + Delta-G solvation = -99.259437 kcal Electronic energy + Delta-G solvation = -25115.744615 eV Core-core repulsion = 21424.368086 eV Total energy + Delta-G solvation = -3691.376529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.77990 -41.83696 -39.02957 -37.66699 -37.19357 -34.55859 -33.55462 -32.16365 -31.04844 -27.64536 -27.48434 -27.22570 -26.66778 -24.01702 -22.55090 -22.01058 -21.47012 -19.50280 -18.69173 -18.36454 -18.04589 -17.07141 -16.71657 -16.60026 -16.27327 -16.03519 -15.91192 -15.58787 -15.24578 -15.20192 -14.80810 -14.55903 -14.41196 -14.00093 -13.80680 -13.27361 -13.04697 -12.98443 -12.87091 -12.64575 -12.50132 -12.24977 -12.10199 -11.88514 -11.79490 -11.72066 -11.65948 -11.31000 -11.15686 -10.41331 -9.77152 -8.94895 -8.47076 -7.73468 -5.32256 0.15552 0.30150 1.40082 1.45144 1.56853 2.31688 2.48277 2.64569 2.68363 3.23260 3.42460 3.63753 3.73987 3.78355 3.88105 4.07686 4.21964 4.29459 4.32024 4.41419 4.47851 4.50947 4.64322 4.71123 4.72095 4.83092 4.97206 4.99733 5.07146 5.17942 5.25047 5.28394 5.44871 5.49129 5.64272 5.66775 5.74852 5.82881 5.89687 6.51603 6.60317 7.27492 7.94007 8.46357 9.25362 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.008838 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.769569 B = 3167.429381 C = 5244.274447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.148 3.852 4 N -0.587 5.587 5 C -0.247 4.247 6 H 0.034 0.966 7 C 0.007 3.993 8 N -0.909 5.909 9 Si 0.925 3.075 10 H -0.297 1.297 11 H -0.279 1.279 12 H -0.274 1.274 13 C 0.189 3.811 14 C -0.097 4.097 15 C -0.123 4.123 16 C 0.054 3.946 17 F -0.145 7.145 18 C -0.113 4.113 19 C -0.190 4.190 20 C 0.121 3.879 21 O -0.307 6.307 22 C 0.209 3.791 23 O -0.402 6.402 24 C 0.104 3.896 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.249 0.751 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 10.561 -5.934 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.023 3.977 4 N -0.306 5.306 5 C -0.378 4.378 6 H 0.052 0.948 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.755 3.245 10 H -0.225 1.225 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.063 3.937 14 C -0.101 4.101 15 C -0.143 4.143 16 C 0.035 3.965 17 F -0.123 7.123 18 C -0.132 4.132 19 C -0.192 4.192 20 C 0.075 3.925 21 O -0.221 6.221 22 C 0.096 3.904 23 O -0.322 6.322 24 C 0.028 3.972 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.626 10.353 -5.678 11.824 hybrid contribution 0.634 -0.231 0.527 0.856 sum 1.260 10.122 -5.151 11.427 Atomic orbital electron populations 1.21662 0.94334 1.01630 1.01865 1.21881 0.95879 0.99108 0.99906 1.21020 0.83774 0.94387 0.98563 1.43886 1.00381 1.83714 1.02627 1.18788 1.06658 1.23310 0.89009 0.94787 1.25285 1.00910 0.94460 0.98472 1.70010 1.25988 1.22409 1.36934 0.85995 0.80276 0.77885 0.80376 1.22472 1.20467 1.19967 1.19689 0.99323 0.88083 0.86593 1.20441 0.94158 1.00347 0.95151 1.20945 1.00606 0.93160 0.99550 1.17493 0.93700 0.91059 0.94249 1.91449 1.73200 1.81329 1.66354 1.20741 0.94027 1.01517 0.96911 1.20379 1.02795 0.93225 1.02780 1.18717 0.92758 0.90455 0.90540 1.86703 1.30707 1.47464 1.57275 1.24562 0.84600 0.79612 1.01595 1.88235 1.86244 1.21296 1.36417 1.21791 0.93246 0.94693 0.87435 0.91958 0.92517 0.92721 0.94327 0.95014 0.95000 0.93053 0.94137 0.94449 0.90017 0.83973 0.81428 0.85811 0.90018 0.84613 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.13 -5.08 6.23 30.59 0.19 -4.89 16 3 C 0.15 6.26 5.68 86.38 0.49 6.75 16 4 N -0.59 -28.98 2.41 -706.35 -1.70 -30.69 16 5 C -0.25 -13.54 8.60 84.03 0.72 -12.82 16 6 H 0.03 1.96 7.90 -2.91 -0.02 1.94 16 7 C 0.01 0.37 3.84 84.86 0.33 0.70 16 8 N -0.91 -51.30 11.38 21.65 0.25 -51.05 16 9 Si 0.93 44.17 27.82 68.60 1.91 46.08 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.19 8.82 5.06 85.63 0.43 9.25 16 14 C -0.10 -3.96 5.48 -19.76 -0.11 -4.07 16 15 C -0.12 -4.24 9.64 22.29 0.21 -4.02 16 16 C 0.05 1.67 7.30 22.36 0.16 1.83 16 17 F -0.14 -4.21 17.27 44.97 0.78 -3.43 16 18 C -0.11 -3.07 9.69 22.32 0.22 -2.86 16 19 C -0.19 -5.93 5.82 -19.75 -0.11 -6.05 16 20 C 0.12 4.83 6.53 22.49 0.15 4.98 16 21 O -0.31 -13.25 6.84 -70.97 -0.49 -13.74 16 22 C 0.21 7.16 7.90 113.37 0.90 8.06 16 23 O -0.40 -12.91 10.97 -126.14 -1.38 -14.30 16 24 C 0.10 2.55 6.87 71.26 0.49 3.04 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.05 1.95 8.03 -2.39 -0.02 1.93 16 32 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.04 1.65 7.93 -2.39 -0.02 1.63 16 34 H 0.08 4.37 5.17 -2.38 -0.01 4.36 16 35 H 0.14 4.45 8.04 -2.91 -0.02 4.43 16 36 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.12 4.23 7.06 -2.39 -0.02 4.21 16 38 H 0.08 2.30 8.13 -2.39 -0.02 2.28 16 39 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -63.43 330.26 5.18 -58.25 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.04 Total: 12.31 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 4.78 Total: -3.44 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.46 Total: -81.74 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.87 Total: -28.03 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.91 Total: 46.08 kcal Total: -63.43 5.18 -58.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194969464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.005 kcal (2) G-P(sol) polarization free energy of solvation -63.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds