Wall clock time and date at job start Tue Mar 31 2020 08:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35709 * 116.99986 * 2 1 4 4 C 1.39096 * 119.88812 * 0.26719 * 3 2 1 5 5 C 1.37609 * 120.15819 * 180.28064 * 4 3 2 6 6 C 1.39812 * 119.93751 * 359.47231 * 5 4 3 7 7 C 1.47454 * 120.11149 * 180.22849 * 6 5 4 8 8 O 1.21604 * 119.99565 * 124.48222 * 7 6 5 9 9 N 1.34775 * 119.99979 * 304.48191 * 7 6 5 10 10 C 1.46504 * 119.99447 * 184.18050 * 9 7 6 11 11 C 1.50697 * 109.47041 * 90.00245 * 10 9 7 12 12 H 1.07988 * 120.00240 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99734 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 119.99813 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47272 * 89.99853 * 15 13 11 17 17 H 1.48501 * 109.47128 * 209.99817 * 15 13 11 18 18 H 1.48500 * 109.47209 * 329.99920 * 15 13 11 19 19 C 1.46492 * 120.00126 * 4.18028 * 9 7 6 20 20 C 1.53001 * 109.47247 * 114.08885 * 19 9 7 21 21 C 1.53001 * 109.46968 * 234.08608 * 19 9 7 22 22 C 1.39980 * 119.77727 * 0.25606 * 6 5 4 23 23 F 1.35105 * 120.08440 * 180.02562 * 22 6 5 24 24 C 1.38059 * 119.84067 * 359.97438 * 22 6 5 25 25 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47515 * 300.00178 * 1 2 3 27 27 H 1.08999 * 109.47118 * 60.00780 * 1 2 3 28 28 H 1.07999 * 119.92197 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.03117 * 179.75092 * 5 4 3 30 30 H 1.09000 * 109.46749 * 209.99960 * 10 9 7 31 31 H 1.09002 * 109.47279 * 329.99724 * 10 9 7 32 32 H 0.96989 * 119.99708 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47532 * 354.08837 * 19 9 7 34 34 H 1.09002 * 109.47161 * 59.99892 * 20 19 9 35 35 H 1.09000 * 109.47416 * 180.02562 * 20 19 9 36 36 H 1.09005 * 109.47078 * 299.99898 * 20 19 9 37 37 H 1.09000 * 109.46960 * 60.00242 * 21 19 9 38 38 H 1.09000 * 109.47361 * 179.97438 * 21 19 9 39 39 H 1.09002 * 109.47318 * 300.00033 * 21 19 9 40 40 H 1.07999 * 119.97250 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2852 2.3742 0.0056 5 6 1.9041 3.6033 -0.0002 6 6 3.3001 3.6816 -0.0006 7 6 3.9673 4.9965 -0.0017 8 8 4.7743 5.2695 0.8660 9 7 3.6826 5.8958 -0.9644 10 6 4.4114 7.1655 -1.0191 11 6 5.6359 7.0050 -1.8827 12 1 5.8502 6.0525 -2.3442 13 6 6.4828 8.0745 -2.0836 14 7 6.2215 9.2347 -1.5219 15 14 8.0010 7.8754 -3.1534 16 1 7.6601 8.1998 -4.5618 17 1 9.0659 8.7945 -2.6775 18 1 8.4840 6.4735 -3.0714 19 6 2.6446 5.6035 -1.9559 20 6 1.4771 6.5755 -1.7737 21 6 3.2246 5.7612 -3.3630 22 6 4.0622 2.5074 -0.0005 23 9 5.4115 2.5758 -0.0004 24 6 3.4317 1.2792 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.2069 2.3141 0.0104 29 1 1.3121 4.5066 0.0001 30 1 3.7670 7.9363 -1.4421 31 1 4.7121 7.4556 -0.0124 32 1 6.8175 9.9868 -1.6629 33 1 2.2909 4.5814 -1.8212 34 1 1.8309 7.5976 -1.9085 35 1 0.7046 6.3578 -2.5112 36 1 1.0639 6.4632 -0.7713 37 1 4.0563 5.0688 -3.4928 38 1 2.4524 5.5434 -4.1008 39 1 3.5783 6.7834 -3.4977 40 1 4.0176 0.3720 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227739979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:39 Heat of formation + Delta-G solvation = -87.886149 kcal Electronic energy + Delta-G solvation = -24446.800548 eV Core-core repulsion = 20755.917201 eV Total energy + Delta-G solvation = -3690.883347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.73852 -40.42672 -39.23376 -36.95564 -35.95386 -32.84674 -31.32235 -30.87269 -30.19577 -27.94417 -27.05180 -26.66395 -23.77879 -23.08355 -22.13169 -21.17397 -18.94169 -18.37002 -17.14106 -16.91110 -16.42518 -16.12173 -16.00675 -15.46980 -15.10203 -14.99905 -14.49962 -14.26308 -14.00351 -13.55099 -13.36151 -12.92869 -12.72075 -12.62997 -12.47178 -12.29028 -12.16403 -11.65402 -11.62284 -11.32735 -11.16769 -11.08124 -10.92342 -10.82402 -10.53373 -10.34424 -10.00493 -9.53132 -9.07461 -8.95417 -8.40595 -8.32869 -7.66163 -6.01081 -4.04215 0.96308 1.05648 2.85827 3.18198 3.32552 3.39710 3.44004 3.55170 3.94120 4.32822 4.47847 4.50759 4.76050 4.81829 4.83804 4.86596 5.10788 5.18570 5.23576 5.27960 5.33435 5.53715 5.65107 5.78198 5.86413 5.98319 6.00879 6.11622 6.15314 6.26286 6.37190 6.50958 6.60818 6.98270 7.04840 7.10939 7.47879 7.56094 7.95891 8.27043 8.39764 8.90836 9.06714 9.59844 11.07165 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004614 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.054231 B = 6067.509444 C = 6612.902221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.165 3.835 4 C -0.225 4.225 5 C -0.025 4.025 6 C -0.184 4.184 7 C 0.551 3.449 8 O -0.528 6.528 9 N -0.582 5.582 10 C 0.246 3.754 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.163 4.163 21 C -0.154 4.154 22 C 0.184 3.816 23 F -0.116 7.116 24 C -0.197 4.197 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -15.153 -0.218 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.119 3.881 4 C -0.244 4.244 5 C -0.043 4.043 6 C -0.188 4.188 7 C 0.337 3.663 8 O -0.405 6.405 9 N -0.313 5.313 10 C 0.128 3.872 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.020 3.980 20 C -0.221 4.221 21 C -0.212 4.212 22 C 0.163 3.837 23 F -0.094 7.094 24 C -0.216 4.216 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.001 -14.967 0.249 21.192 hybrid contribution 0.866 0.095 -0.669 1.099 sum -14.134 -14.872 -0.420 20.522 Atomic orbital electron populations 1.23128 0.77870 1.04161 1.01771 1.86027 1.21779 1.26591 1.88115 1.18702 0.91264 0.84363 0.93774 1.21158 1.00428 0.91695 1.11103 1.20996 0.92173 0.97999 0.93152 1.20249 0.94430 0.94262 1.09874 1.17813 0.82415 0.83323 0.82775 1.90795 1.34534 1.78107 1.37099 1.48261 1.36564 1.19671 1.26820 1.19283 0.90827 0.78411 0.98706 1.21436 1.07848 0.96972 1.29603 0.92331 1.24913 0.97855 0.95166 0.96139 1.69930 1.38130 1.01445 1.43959 0.86541 0.82778 0.78142 0.80278 1.20690 1.21143 1.19862 1.21197 0.88195 0.98675 0.89945 1.22203 0.97522 1.01371 1.00979 1.22095 1.00069 1.04784 0.94235 1.17193 0.77367 0.92198 0.96892 1.91600 1.28001 1.97020 1.92786 1.20117 0.92459 0.97380 1.11657 0.88072 0.92289 0.92229 0.84436 0.84074 0.94629 0.93819 0.92796 0.90211 0.91268 0.92091 0.93023 0.92521 0.93299 0.90124 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.16 10.48 -18.83 -0.20 -3.36 16 3 C 0.17 1.94 6.69 -39.04 -0.26 1.67 16 4 C -0.23 -2.40 9.01 -39.49 -0.36 -2.75 16 5 C -0.02 -0.32 7.41 -39.22 -0.29 -0.61 16 6 C -0.18 -3.21 4.82 -104.90 -0.51 -3.71 16 7 C 0.55 12.28 6.86 -12.51 -0.09 12.19 16 8 O -0.53 -14.19 16.47 5.27 0.09 -14.10 16 9 N -0.58 -12.53 2.38 -168.72 -0.40 -12.93 16 10 C 0.25 6.40 4.47 -5.19 -0.02 6.38 16 11 C -0.52 -14.62 7.85 -34.44 -0.27 -14.90 16 12 H 0.06 1.67 7.52 -52.49 -0.39 1.27 16 13 C 0.06 1.74 5.46 -17.81 -0.10 1.65 16 14 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 15 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.12 2.06 2.51 -67.93 -0.17 1.89 16 20 C -0.16 -2.27 9.04 37.16 0.34 -1.93 16 21 C -0.15 -2.62 8.34 37.16 0.31 -2.31 16 22 C 0.18 3.12 7.27 -39.00 -0.28 2.84 16 23 F -0.12 -2.28 16.69 2.25 0.04 -2.24 16 24 C -0.20 -2.66 9.95 -39.42 -0.39 -3.05 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.29 7.64 -51.93 -0.40 -0.11 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.14 1.00 6.27 -52.49 -0.33 0.68 16 29 H 0.14 1.64 6.36 -52.48 -0.33 1.30 16 30 H 0.04 0.92 6.72 -51.93 -0.35 0.57 16 31 H 0.04 1.30 7.37 -51.93 -0.38 0.91 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.17 4.65 -51.93 -0.24 0.92 16 34 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.66 7.24 -51.93 -0.38 0.29 16 37 H 0.06 1.04 7.95 -51.93 -0.41 0.63 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.58 6.93 -51.93 -0.36 1.22 16 40 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -34.08 333.66 -5.99 -40.07 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.16 Total: -2.22 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.10 Total: -1.51 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.33 Total: -38.75 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.11 Total: -17.46 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.08 -5.99 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227739979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.818 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds