Wall clock time and date at job start Tue Mar 31 2020 08:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35709 * 116.99986 * 2 1 4 4 C 1.39096 * 119.88812 * 0.26719 * 3 2 1 5 5 C 1.37609 * 120.15819 * 180.28064 * 4 3 2 6 6 C 1.39812 * 119.93751 * 359.47231 * 5 4 3 7 7 C 1.47454 * 120.11149 * 180.22849 * 6 5 4 8 8 O 1.21604 * 119.99565 * 124.48222 * 7 6 5 9 9 N 1.34775 * 119.99979 * 304.48191 * 7 6 5 10 10 C 1.46504 * 119.99447 * 184.18050 * 9 7 6 11 11 C 1.50697 * 109.47041 * 90.00245 * 10 9 7 12 12 H 1.07988 * 120.00240 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99734 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 119.99813 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47272 * 89.99853 * 15 13 11 17 17 H 1.48501 * 109.47128 * 209.99817 * 15 13 11 18 18 H 1.48500 * 109.47209 * 329.99920 * 15 13 11 19 19 C 1.46492 * 120.00126 * 4.18028 * 9 7 6 20 20 C 1.53001 * 109.47247 * 114.08885 * 19 9 7 21 21 C 1.53001 * 109.46968 * 234.08608 * 19 9 7 22 22 C 1.39980 * 119.77727 * 0.25606 * 6 5 4 23 23 F 1.35105 * 120.08440 * 180.02562 * 22 6 5 24 24 C 1.38059 * 119.84067 * 359.97438 * 22 6 5 25 25 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47515 * 300.00178 * 1 2 3 27 27 H 1.08999 * 109.47118 * 60.00780 * 1 2 3 28 28 H 1.07999 * 119.92197 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.03117 * 179.75092 * 5 4 3 30 30 H 1.09000 * 109.46749 * 209.99960 * 10 9 7 31 31 H 1.09002 * 109.47279 * 329.99724 * 10 9 7 32 32 H 0.96989 * 119.99708 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47532 * 354.08837 * 19 9 7 34 34 H 1.09002 * 109.47161 * 59.99892 * 20 19 9 35 35 H 1.09000 * 109.47416 * 180.02562 * 20 19 9 36 36 H 1.09005 * 109.47078 * 299.99898 * 20 19 9 37 37 H 1.09000 * 109.46960 * 60.00242 * 21 19 9 38 38 H 1.09000 * 109.47361 * 179.97438 * 21 19 9 39 39 H 1.09002 * 109.47318 * 300.00033 * 21 19 9 40 40 H 1.07999 * 119.97250 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2852 2.3742 0.0056 5 6 1.9041 3.6033 -0.0002 6 6 3.3001 3.6816 -0.0006 7 6 3.9673 4.9965 -0.0017 8 8 4.7743 5.2695 0.8660 9 7 3.6826 5.8958 -0.9644 10 6 4.4114 7.1655 -1.0191 11 6 5.6359 7.0050 -1.8827 12 1 5.8502 6.0525 -2.3442 13 6 6.4828 8.0745 -2.0836 14 7 6.2215 9.2347 -1.5219 15 14 8.0010 7.8754 -3.1534 16 1 7.6601 8.1998 -4.5618 17 1 9.0659 8.7945 -2.6775 18 1 8.4840 6.4735 -3.0714 19 6 2.6446 5.6035 -1.9559 20 6 1.4771 6.5755 -1.7737 21 6 3.2246 5.7612 -3.3630 22 6 4.0622 2.5074 -0.0005 23 9 5.4115 2.5758 -0.0004 24 6 3.4317 1.2792 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.2069 2.3141 0.0104 29 1 1.3121 4.5066 0.0001 30 1 3.7670 7.9363 -1.4421 31 1 4.7121 7.4556 -0.0124 32 1 6.8175 9.9868 -1.6629 33 1 2.2909 4.5814 -1.8212 34 1 1.8309 7.5976 -1.9085 35 1 0.7046 6.3578 -2.5112 36 1 1.0639 6.4632 -0.7713 37 1 4.0563 5.0688 -3.4928 38 1 2.4524 5.5434 -4.1008 39 1 3.5783 6.7834 -3.4977 40 1 4.0176 0.3720 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227739979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:38 Heat of formation + Delta-G solvation = -110.612998 kcal Electronic energy + Delta-G solvation = -24447.786058 eV Core-core repulsion = 20755.917201 eV Total energy + Delta-G solvation = -3691.868857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.10218 -41.54799 -40.58207 -38.03468 -37.63064 -34.96271 -32.49819 -32.40497 -31.38761 -29.34086 -28.16072 -27.95896 -25.42706 -24.40883 -23.46282 -22.56128 -20.33410 -19.40898 -18.65342 -18.54232 -18.05982 -17.18316 -17.10683 -16.86866 -16.47440 -16.36344 -15.90948 -15.69285 -15.50507 -15.01704 -14.64387 -14.34771 -14.00533 -13.92931 -13.68337 -13.47959 -13.28298 -13.21709 -13.12121 -12.86026 -12.75337 -12.57946 -12.27134 -12.14711 -12.03205 -11.98878 -11.59519 -11.56726 -10.80660 -10.62466 -10.03352 -9.55106 -9.34011 -8.21991 -6.33768 -0.16864 0.02518 1.33300 1.36771 1.46586 1.67365 2.08768 2.18910 2.39254 2.50205 3.07700 3.22094 3.49024 3.60356 3.88605 3.97219 4.11803 4.17905 4.27046 4.40284 4.45405 4.51249 4.68220 4.80318 4.83500 4.87006 4.89987 5.00919 5.02259 5.04509 5.07481 5.10034 5.22256 5.43048 5.46144 5.53380 5.61756 5.84282 6.08115 6.26761 6.66905 6.74750 7.23724 7.39837 8.85534 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004614 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.054231 B = 6067.509444 C = 6612.902221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.320 6.320 3 C 0.181 3.819 4 C -0.200 4.200 5 C -0.017 4.017 6 C -0.212 4.212 7 C 0.543 3.457 8 O -0.594 6.594 9 N -0.584 5.584 10 C 0.265 3.735 11 C -0.530 4.530 12 H 0.048 0.952 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.960 3.040 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.116 3.884 20 C -0.156 4.156 21 C -0.150 4.150 22 C 0.153 3.847 23 F -0.146 7.146 24 C -0.196 4.196 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.186 0.814 29 H 0.161 0.839 30 H 0.033 0.967 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 -17.502 -1.656 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.232 6.232 3 C 0.134 3.866 4 C -0.218 4.218 5 C -0.035 4.035 6 C -0.216 4.216 7 C 0.332 3.668 8 O -0.476 6.476 9 N -0.314 5.314 10 C 0.144 3.856 11 C -0.569 4.569 12 H 0.066 0.934 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.785 3.215 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.204 1.204 19 C 0.014 3.986 20 C -0.214 4.214 21 C -0.207 4.207 22 C 0.133 3.867 23 F -0.124 7.124 24 C -0.215 4.215 25 H 0.140 0.860 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.203 0.797 29 H 0.178 0.822 30 H 0.051 0.949 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.555 -17.341 -1.228 25.427 hybrid contribution 1.776 0.671 -0.200 1.909 sum -16.779 -16.670 -1.428 23.695 Atomic orbital electron populations 1.23572 0.75133 1.06306 1.03346 1.86054 1.24491 1.25452 1.87237 1.18763 0.90624 0.85632 0.91598 1.21562 1.02517 0.89789 1.07916 1.21188 0.89991 1.00055 0.92285 1.19927 0.96267 0.91271 1.14161 1.18632 0.81673 0.84895 0.81632 1.90735 1.37633 1.79650 1.39585 1.48292 1.37131 1.18095 1.27853 1.18706 0.90848 0.80779 0.95260 1.21613 1.08943 0.96562 1.29776 0.93391 1.25756 1.00849 0.94831 0.97433 1.70039 1.39361 1.02159 1.45105 0.85529 0.78938 0.77676 0.79394 1.18565 1.20543 1.20377 1.21629 0.87606 1.01157 0.88175 1.22174 0.97170 0.98832 1.03238 1.22048 1.00768 1.02045 0.95881 1.17559 0.76351 0.93551 0.99244 1.91515 1.30261 1.97240 1.93403 1.20201 0.93846 0.96260 1.11207 0.85993 0.90754 0.90420 0.79704 0.82190 0.94901 0.98774 0.92468 0.87268 0.93977 0.87821 0.91696 0.94702 0.88792 0.93436 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -4.99 10.48 -90.30 -0.95 -5.94 16 3 C 0.18 3.55 6.69 22.62 0.15 3.70 16 4 C -0.20 -3.24 9.01 22.33 0.20 -3.04 16 5 C -0.02 -0.39 7.41 22.50 0.17 -0.22 16 6 C -0.21 -7.44 4.82 -20.05 -0.10 -7.54 16 7 C 0.54 25.54 6.86 86.67 0.59 26.13 16 8 O -0.59 -34.59 16.47 -4.04 -0.07 -34.65 16 9 N -0.58 -26.24 2.38 -805.98 -1.92 -28.17 16 10 C 0.26 14.70 4.47 85.63 0.38 15.08 16 11 C -0.53 -31.45 7.85 25.60 0.20 -31.25 16 12 H 0.05 2.88 7.52 -2.92 -0.02 2.86 16 13 C 0.01 0.60 5.46 84.66 0.46 1.06 16 14 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 15 Si 0.96 46.56 29.54 68.60 2.03 48.58 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 C 0.12 3.75 2.51 44.99 0.11 3.86 16 20 C -0.16 -4.01 9.04 71.98 0.65 -3.36 16 21 C -0.15 -5.00 8.34 71.98 0.60 -4.40 16 22 C 0.15 5.32 7.27 22.65 0.16 5.48 16 23 F -0.15 -6.15 16.69 44.97 0.75 -5.40 16 24 C -0.20 -5.03 9.95 22.37 0.22 -4.80 16 25 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.07 0.26 7.64 -2.39 -0.02 0.25 16 27 H 0.08 0.24 7.66 -2.39 -0.02 0.22 16 28 H 0.19 1.31 6.27 -2.91 -0.02 1.29 16 29 H 0.16 3.09 6.36 -2.91 -0.02 3.07 16 30 H 0.03 1.82 6.72 -2.39 -0.02 1.80 16 31 H -0.01 -0.38 7.37 -2.39 -0.02 -0.40 16 32 H 0.27 15.38 8.31 -92.72 -0.77 14.61 16 33 H 0.11 2.90 4.65 -2.39 -0.01 2.89 16 34 H 0.04 1.31 6.91 -2.39 -0.02 1.30 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.49 7.24 -2.38 -0.02 1.47 16 37 H 0.03 1.28 7.95 -2.39 -0.02 1.26 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.89 6.93 -2.39 -0.02 1.88 16 40 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -82.78 333.66 6.11 -76.67 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.06 Total: 3.75 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.93 Total: 1.88 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.64 Total: -84.90 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.01 Total: -40.59 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.75 Total: -5.40 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -82.78 6.11 -76.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227739979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.943 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds