Wall clock time and date at job start Tue Mar 31 2020 07:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47536 * 2 1 4 4 C 1.53001 * 109.47206 * 119.99898 * 2 1 3 5 5 N 1.46504 * 109.47190 * 174.99734 * 4 2 1 6 6 C 1.46503 * 120.00042 * 275.11869 * 5 4 2 7 7 C 1.50698 * 109.47040 * 270.27295 * 6 5 4 8 8 H 1.08000 * 120.00249 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00253 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99834 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47369 * 89.99578 * 11 9 7 13 13 H 1.48499 * 109.47055 * 210.00066 * 11 9 7 14 14 H 1.48498 * 109.47082 * 329.99785 * 11 9 7 15 15 C 1.34770 * 119.99941 * 95.39350 * 5 4 2 16 16 O 1.21611 * 119.99766 * 354.86865 * 15 5 4 17 17 C 1.47391 * 120.00335 * 174.86847 * 15 5 4 18 18 C 1.40222 * 120.21135 * 268.09112 * 17 15 5 19 19 O 1.35660 * 120.14030 * 359.97438 * 18 17 15 20 20 C 1.38596 * 119.72763 * 179.97438 * 18 17 15 21 21 C 1.38183 * 120.15122 * 0.02562 * 20 18 17 22 22 C 1.38364 * 120.43620 * 359.97361 * 21 20 18 23 23 C 1.38175 * 120.27180 * 359.76440 * 22 21 20 24 24 F 1.35102 * 120.08564 * 180.27757 * 23 22 21 25 25 H 1.08997 * 109.46933 * 299.99888 * 1 2 3 26 26 H 1.08993 * 109.47412 * 59.99773 * 1 2 3 27 27 H 1.09005 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46905 * 239.99663 * 2 1 3 29 29 H 1.09010 * 109.47259 * 305.29549 * 3 2 1 30 30 H 1.09002 * 109.47616 * 65.28824 * 3 2 1 31 31 H 1.08997 * 109.47654 * 185.29374 * 3 2 1 32 32 H 1.09003 * 109.46961 * 55.00480 * 4 2 1 33 33 H 1.08992 * 109.47473 * 295.00120 * 4 2 1 34 34 H 1.09004 * 109.47319 * 30.27449 * 6 5 4 35 35 H 1.09002 * 109.46942 * 150.27291 * 6 5 4 36 36 H 0.97001 * 119.99824 * 180.02562 * 10 9 7 37 37 H 0.96693 * 113.99785 * 86.26564 * 19 18 17 38 38 H 1.07999 * 119.92391 * 180.02562 * 20 18 17 39 39 H 1.08001 * 119.77788 * 180.02562 * 21 20 18 40 40 H 1.08004 * 119.86417 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1261 -1.9339 0.4640 7 6 4.3259 -3.0988 1.3989 8 1 4.0170 -3.0221 2.4309 9 6 4.9020 -4.2630 0.9364 10 7 5.0759 -5.2798 1.7521 11 14 5.4355 -4.3959 -0.8488 12 1 6.8428 -3.9404 -0.9802 13 1 5.3290 -5.8088 -1.2934 14 1 4.5588 -3.5442 -1.6922 15 6 4.2673 0.0925 1.8096 16 8 3.7516 1.0593 2.3373 17 6 5.7313 -0.0741 1.8472 18 6 6.3385 -0.7373 2.9231 19 8 5.5810 -1.2286 3.9356 20 6 7.7160 -0.8888 2.9480 21 6 8.4880 -0.3881 1.9171 22 6 7.8956 0.2673 0.8522 23 6 6.5235 0.4236 0.8067 24 9 5.9485 1.0593 -0.2376 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6013 1.9830 -0.8388 30 1 1.7562 1.9283 0.9335 31 1 3.1259 1.4439 -0.0948 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.4821 -2.2369 -0.3617 35 1 5.0913 -1.6122 0.0728 36 1 5.4816 -6.0986 1.4268 37 1 5.2374 -2.1178 3.7740 38 1 8.1870 -1.3994 3.7749 39 1 9.5608 -0.5100 1.9424 40 1 8.5079 0.6546 0.0512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228846756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:26 Heat of formation + Delta-G solvation = -106.392156 kcal Electronic energy + Delta-G solvation = -25340.975542 eV Core-core repulsion = 21649.289715 eV Total energy + Delta-G solvation = -3691.685827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.68622 -39.97444 -38.43217 -36.13864 -35.95298 -34.19638 -32.44411 -30.69684 -29.45701 -28.21716 -26.82644 -25.98678 -23.40182 -22.47616 -22.30800 -20.14828 -18.92572 -18.18664 -17.26217 -16.78467 -16.51637 -16.21226 -15.82086 -15.24234 -14.86485 -14.63730 -14.31860 -14.13184 -14.06153 -13.55442 -13.43140 -12.80814 -12.70385 -12.39161 -12.03724 -11.96805 -11.91258 -11.76658 -11.59196 -11.35020 -11.10363 -10.97108 -10.73052 -10.60364 -10.47878 -10.31505 -10.24375 -9.76266 -9.30031 -8.84526 -8.55153 -8.36775 -7.80781 -6.34971 -4.37301 1.25630 1.37824 3.11006 3.13320 3.19653 3.22427 3.56785 3.82996 4.17902 4.27087 4.74247 4.94176 4.98253 5.06809 5.18523 5.26451 5.31838 5.40858 5.45565 5.82278 5.87630 5.94425 5.97321 6.11454 6.15653 6.21399 6.23452 6.30844 6.32430 6.41217 6.41746 6.52171 6.59958 6.64448 6.74835 6.93810 7.26122 7.34549 7.98086 8.05854 8.28516 8.63789 8.78673 9.25729 10.76325 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.008956 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.151774 B = 3125.576447 C = 4343.586070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.136 4.136 4 C 0.124 3.876 5 N -0.580 5.580 6 C 0.208 3.792 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.082 3.918 10 N -0.886 5.886 11 Si 0.866 3.134 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.264 1.264 15 C 0.573 3.427 16 O -0.547 6.547 17 C -0.165 4.165 18 C 0.200 3.800 19 O -0.496 6.496 20 C -0.156 4.156 21 C -0.068 4.068 22 C -0.174 4.174 23 C 0.136 3.864 24 F -0.134 7.134 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.026 0.974 36 H 0.268 0.732 37 H 0.411 0.589 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 7.351 -2.868 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.001 3.999 5 N -0.309 5.309 6 C 0.087 3.913 7 C -0.582 4.582 8 H 0.096 0.904 9 C -0.122 4.122 10 N -0.523 5.523 11 Si 0.693 3.307 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.188 1.188 15 C 0.360 3.640 16 O -0.426 6.426 17 C -0.170 4.170 18 C 0.153 3.847 19 O -0.311 6.311 20 C -0.175 4.175 21 C -0.086 4.086 22 C -0.193 4.193 23 C 0.116 3.884 24 F -0.112 7.112 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.273 0.727 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.832 8.168 -2.365 8.698 hybrid contribution 0.182 -0.854 -1.444 1.687 sum 2.014 7.314 -3.809 8.489 Atomic orbital electron populations 1.21745 0.95021 1.01623 1.01503 1.21517 0.95483 0.97078 0.99203 1.21760 1.01155 0.95382 1.01068 1.21470 0.79862 1.00854 0.97728 1.47858 1.05860 1.26013 1.51167 1.19801 0.93384 0.85176 0.92976 1.21278 1.42156 0.96702 0.98113 0.90363 1.24814 0.94698 0.95320 0.97407 1.69864 1.42875 1.04233 1.35364 0.86974 0.80011 0.78011 0.85723 1.19684 1.20762 1.18830 1.17685 0.85650 0.82464 0.78216 1.90725 1.74236 1.30526 1.47126 1.20242 0.94987 1.05598 0.96140 1.17949 0.89247 0.92012 0.85463 1.84581 1.68936 1.38334 1.39222 1.21354 0.92774 1.02915 1.00421 1.20844 1.00027 0.95371 0.92352 1.20935 0.92265 1.04734 1.01387 1.17417 0.90930 0.95702 0.84332 1.91499 1.85220 1.79268 1.55253 0.92690 0.92901 0.92596 0.91278 0.93862 0.92273 0.92932 0.90149 0.90407 0.94581 0.95608 0.92201 0.72672 0.84463 0.84640 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 2 C -0.11 -1.80 3.12 -90.62 -0.28 -2.08 16 3 C -0.14 -2.24 7.92 37.15 0.29 -1.95 16 4 C 0.12 2.26 4.95 -4.04 -0.02 2.24 16 5 N -0.58 -12.02 2.27 -176.34 -0.40 -12.42 16 6 C 0.21 4.59 4.01 -5.19 -0.02 4.57 16 7 C -0.54 -13.31 9.66 -34.44 -0.33 -13.65 16 8 H 0.08 2.05 6.78 -52.49 -0.36 1.69 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -23.97 13.96 55.43 0.77 -23.20 16 11 Si 0.87 19.42 27.47 -169.99 -4.67 14.75 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 15 C 0.57 12.43 5.16 -12.54 -0.06 12.37 16 16 O -0.55 -12.82 15.15 5.27 0.08 -12.74 16 17 C -0.17 -3.35 4.12 -104.79 -0.43 -3.79 16 18 C 0.20 3.83 6.72 -38.70 -0.26 3.57 16 19 O -0.50 -9.74 12.95 -18.68 -0.24 -9.98 16 20 C -0.16 -2.47 9.97 -39.47 -0.39 -2.86 16 21 C -0.07 -0.93 10.02 -39.56 -0.40 -1.33 16 22 C -0.17 -2.61 10.00 -39.56 -0.40 -3.00 16 23 C 0.14 2.51 6.53 -38.97 -0.25 2.25 16 24 F -0.13 -2.51 16.83 2.25 0.04 -2.47 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 29 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 1.01 7.85 -51.93 -0.41 0.61 16 31 H 0.05 0.99 6.85 -51.93 -0.36 0.63 16 32 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 33 H 0.08 1.45 7.34 -51.93 -0.38 1.07 16 34 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 35 H 0.03 0.58 5.84 -51.93 -0.30 0.28 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.41 7.93 7.46 45.56 0.34 8.27 16 38 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -28.89 336.80 -6.46 -35.35 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.80 Total: 8.77 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.31 Total: -3.14 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.37 Total: -35.62 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.16 Total: -22.72 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.67 Total: 14.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.89 -6.46 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228846756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.038 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds